Wall clock time and date at job start Mon Mar 30 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99618 * 2 1 4 4 H 1.48498 * 109.47175 * 269.99659 * 3 2 1 5 5 H 1.48506 * 109.47321 * 29.99979 * 3 2 1 6 6 H 1.48503 * 109.46999 * 150.00012 * 3 2 1 7 7 C 1.38944 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00077 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00137 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00122 * 179.97438 * 10 9 7 13 13 S 1.81401 * 109.47293 * 180.02562 * 12 10 9 14 14 C 1.81402 * 102.99967 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46825 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.61803 * 54.99935 * 15 14 13 17 17 C 1.53304 * 109.76731 * 294.54513 * 15 14 13 18 18 C 1.52871 * 108.58245 * 165.73789 * 17 15 14 19 19 C 1.52710 * 110.15025 * 54.52550 * 18 17 15 20 20 H 1.09005 * 115.39186 * 128.78736 * 19 18 17 21 21 C 1.53656 * 116.02911 * 269.79419 * 19 18 17 22 22 C 1.52065 * 120.52506 * 338.52609 * 19 18 17 23 23 H 1.09002 * 115.93211 * 150.00823 * 22 19 18 24 24 C 1.52076 * 120.01877 * 5.28948 * 22 19 18 25 25 H 0.96998 * 120.00209 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99357 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47032 * 60.00398 * 12 10 9 28 28 H 1.08997 * 109.46916 * 300.00283 * 12 10 9 29 29 H 1.09000 * 109.46970 * 59.99839 * 14 13 12 30 30 H 1.08997 * 109.46871 * 299.99347 * 14 13 12 31 31 H 1.08996 * 109.61766 * 285.47005 * 17 15 14 32 32 H 1.09009 * 109.61553 * 46.01307 * 17 15 14 33 33 H 1.08997 * 109.36051 * 294.31737 * 18 17 15 34 34 H 1.09000 * 109.35516 * 174.73181 * 18 17 15 35 35 H 1.08998 * 117.53936 * 4.31277 * 21 19 18 36 36 H 1.09005 * 117.54003 * 219.06417 * 21 19 18 37 37 H 1.09001 * 109.26840 * 218.03488 * 24 22 19 38 38 H 1.08997 * 109.26821 * 98.56686 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6528 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0011 13 16 2.4228 -6.2416 0.0017 14 6 1.3446 -7.7004 0.0016 15 6 2.2016 -8.9679 0.0027 16 1 2.8938 -8.9409 0.8443 17 6 2.9894 -9.0623 -1.3090 18 6 4.0851 -10.1156 -1.1445 19 6 3.4773 -11.4402 -0.6885 20 1 3.7604 -12.3120 -1.2783 21 6 3.3787 -11.6493 0.8306 22 6 2.1186 -11.4723 -0.0063 23 1 1.5299 -12.3770 -0.1588 24 6 1.2999 -10.1969 0.1192 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.6171 -4.9209 -0.8886 28 1 0.6177 -4.9204 0.8913 29 1 0.7157 -7.6873 -0.8886 30 1 0.7153 -7.6871 0.8914 31 1 2.3196 -9.3542 -2.1179 32 1 3.4412 -8.0963 -1.5348 33 1 4.8059 -9.7741 -0.4016 34 1 4.5930 -10.2604 -2.0980 35 1 3.6770 -10.8214 1.4737 36 1 3.5912 -12.6462 1.2170 37 1 0.7988 -10.1849 1.0871 38 1 0.5517 -10.1704 -0.6730 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598721436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:32 Heat of formation + Delta-G solvation = -37.770104 kcal Electronic energy + Delta-G solvation = -17707.989585 eV Core-core repulsion = 14869.256369 eV Total energy + Delta-G solvation = -2838.733216 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80869 -38.10261 -34.47439 -33.99545 -31.38219 -31.27241 -29.25614 -27.58980 -24.67874 -24.11957 -22.06221 -21.03729 -19.46872 -18.67872 -17.98216 -16.38717 -15.95048 -15.67838 -14.94624 -14.61476 -14.50660 -14.36726 -14.15729 -13.75459 -13.51823 -13.02989 -12.61017 -12.41219 -12.34993 -12.04208 -11.81478 -11.59406 -11.16977 -11.08108 -10.98313 -10.90370 -10.44436 -10.40424 -10.23927 -9.91120 -9.83592 -9.56470 -9.45127 -8.53651 -8.03695 -7.20592 -6.46498 -3.87735 1.89971 2.98287 3.15676 3.25005 3.31454 3.54519 3.81025 4.15023 4.42212 4.52565 4.55768 4.76857 4.85339 4.90727 5.08630 5.12085 5.17871 5.34879 5.39479 5.44411 5.47512 5.52832 5.67574 5.68813 5.71170 5.77636 5.80901 5.96184 6.00101 6.06754 6.11701 6.20973 6.28925 6.35601 7.51311 7.98088 8.52781 9.11305 9.45541 9.96056 10.71079 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.058735 B = 0.003046 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.602086 B = 9190.643501 C = 9459.017991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.300 4.300 8 H 0.105 0.895 9 N -0.556 5.556 10 C 0.454 3.546 11 O -0.575 6.575 12 C -0.113 4.113 13 S -0.179 6.179 14 C -0.109 4.109 15 C -0.068 4.068 16 H 0.080 0.920 17 C -0.119 4.119 18 C -0.089 4.089 19 C -0.147 4.147 20 H 0.098 0.902 21 C -0.188 4.188 22 C -0.137 4.137 23 H 0.096 0.904 24 C -0.080 4.080 25 H 0.273 0.727 26 H 0.393 0.607 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 -20.728 -0.665 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.430 4.430 8 H 0.123 0.877 9 N -0.192 5.192 10 C 0.238 3.762 11 O -0.460 6.460 12 C -0.264 4.264 13 S 0.047 5.953 14 C -0.257 4.257 15 C -0.088 4.088 16 H 0.098 0.902 17 C -0.157 4.157 18 C -0.126 4.126 19 C -0.165 4.165 20 H 0.116 0.884 21 C -0.225 4.225 22 C -0.156 4.156 23 H 0.114 0.886 24 C -0.118 4.118 25 H 0.082 0.918 26 H 0.227 0.773 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.556 -20.485 -0.653 20.554 hybrid contribution -1.812 0.749 0.044 1.961 sum -0.256 -19.736 -0.608 19.747 Atomic orbital electron populations 1.69612 1.05990 1.28328 1.50209 1.25289 0.95662 0.99813 0.97071 0.85825 0.79265 0.80557 0.78472 1.20303 1.20855 1.19294 1.19741 0.93457 0.81996 1.47804 0.87733 1.41773 1.09230 1.04286 1.63906 1.19018 0.88019 0.83874 0.85251 1.90562 1.13337 1.86526 1.55566 1.23447 1.01029 0.96677 1.05274 1.87323 1.13223 0.96871 1.97855 1.23568 1.01093 0.96669 1.04420 1.20904 0.96767 0.91647 0.99447 0.90217 1.21736 0.97493 0.99792 0.96656 1.21041 0.97595 0.92629 1.01372 1.22262 0.99890 0.99378 0.94955 0.88381 1.23170 1.02639 1.02609 0.94045 1.21783 0.90245 0.99210 1.04332 0.88567 1.20891 0.97223 0.91670 1.02064 0.91753 0.77323 0.88920 0.88959 0.90482 0.90522 0.91795 0.89928 0.91480 0.91565 0.88585 0.89240 0.91454 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.45 11.02 7.80 -10.99 -0.09 10.93 16 11 O -0.58 -16.11 15.44 5.54 0.09 -16.03 16 12 C -0.11 -2.06 6.42 36.01 0.23 -1.82 16 13 S -0.18 -3.08 19.57 -107.50 -2.10 -5.18 16 14 C -0.11 -1.32 5.40 37.16 0.20 -1.12 16 15 C -0.07 -0.73 1.93 -90.53 -0.17 -0.91 16 16 H 0.08 0.93 7.11 -51.93 -0.37 0.56 16 17 C -0.12 -1.29 5.22 -26.64 -0.14 -1.43 16 18 C -0.09 -0.86 5.83 -26.95 -0.16 -1.02 16 19 C -0.15 -1.29 6.19 -90.90 -0.56 -1.85 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.19 -1.60 9.66 -26.74 -0.26 -1.86 16 22 C -0.14 -1.17 6.00 -91.92 -0.55 -1.72 16 23 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 24 C -0.08 -0.71 5.22 -27.27 -0.14 -0.85 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 32 H 0.08 1.06 6.84 -51.92 -0.35 0.70 16 33 H 0.07 0.68 8.06 -51.93 -0.42 0.27 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.88 7.26 -51.93 -0.38 0.51 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -30.65 321.17 -9.41 -40.07 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.00 Total: 7.98 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.88 Total: -9.68 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.67 Total: -38.02 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.03 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.10 Total: -5.18 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.65 -9.41 -40.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598721436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.297 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds