Wall clock time and date at job start Mon Mar 30 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99618 * 2 1 4 4 H 1.48498 * 109.47175 * 269.99659 * 3 2 1 5 5 H 1.48506 * 109.47321 * 29.99979 * 3 2 1 6 6 H 1.48503 * 109.46999 * 150.00012 * 3 2 1 7 7 C 1.38944 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00077 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00137 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00122 * 179.97438 * 10 9 7 13 13 S 1.81401 * 109.47293 * 180.02562 * 12 10 9 14 14 C 1.81402 * 102.99967 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46825 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.61803 * 54.99935 * 15 14 13 17 17 C 1.53304 * 109.76731 * 294.54513 * 15 14 13 18 18 C 1.52871 * 108.58245 * 165.73789 * 17 15 14 19 19 C 1.52710 * 110.15025 * 54.52550 * 18 17 15 20 20 H 1.09005 * 115.39186 * 128.78736 * 19 18 17 21 21 C 1.53656 * 116.02911 * 269.79419 * 19 18 17 22 22 C 1.52065 * 120.52506 * 338.52609 * 19 18 17 23 23 H 1.09002 * 115.93211 * 150.00823 * 22 19 18 24 24 C 1.52076 * 120.01877 * 5.28948 * 22 19 18 25 25 H 0.96998 * 120.00209 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99357 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47032 * 60.00398 * 12 10 9 28 28 H 1.08997 * 109.46916 * 300.00283 * 12 10 9 29 29 H 1.09000 * 109.46970 * 59.99839 * 14 13 12 30 30 H 1.08997 * 109.46871 * 299.99347 * 14 13 12 31 31 H 1.08996 * 109.61766 * 285.47005 * 17 15 14 32 32 H 1.09009 * 109.61553 * 46.01307 * 17 15 14 33 33 H 1.08997 * 109.36051 * 294.31737 * 18 17 15 34 34 H 1.09000 * 109.35516 * 174.73181 * 18 17 15 35 35 H 1.08998 * 117.53936 * 4.31277 * 21 19 18 36 36 H 1.09005 * 117.54003 * 219.06417 * 21 19 18 37 37 H 1.09001 * 109.26840 * 218.03488 * 24 22 19 38 38 H 1.08997 * 109.26821 * 98.56686 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6528 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0011 13 16 2.4228 -6.2416 0.0017 14 6 1.3446 -7.7004 0.0016 15 6 2.2016 -8.9679 0.0027 16 1 2.8938 -8.9409 0.8443 17 6 2.9894 -9.0623 -1.3090 18 6 4.0851 -10.1156 -1.1445 19 6 3.4773 -11.4402 -0.6885 20 1 3.7604 -12.3120 -1.2783 21 6 3.3787 -11.6493 0.8306 22 6 2.1186 -11.4723 -0.0063 23 1 1.5299 -12.3770 -0.1588 24 6 1.2999 -10.1969 0.1192 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.6171 -4.9209 -0.8886 28 1 0.6177 -4.9204 0.8913 29 1 0.7157 -7.6873 -0.8886 30 1 0.7153 -7.6871 0.8914 31 1 2.3196 -9.3542 -2.1179 32 1 3.4412 -8.0963 -1.5348 33 1 4.8059 -9.7741 -0.4016 34 1 4.5930 -10.2604 -2.0980 35 1 3.6770 -10.8214 1.4737 36 1 3.5912 -12.6462 1.2170 37 1 0.7988 -10.1849 1.0871 38 1 0.5517 -10.1704 -0.6730 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598721436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:32 Heat of formation + Delta-G solvation = -54.966911 kcal Electronic energy + Delta-G solvation = -17708.735295 eV Core-core repulsion = 14869.256369 eV Total energy + Delta-G solvation = -2839.478926 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.54821 -40.07674 -36.06826 -35.27168 -33.41000 -32.07275 -30.89286 -28.46543 -26.66407 -24.94894 -22.86339 -21.83963 -21.30348 -20.02802 -19.43285 -17.87314 -17.30936 -16.81321 -16.47003 -16.29367 -15.88045 -15.60030 -15.28131 -14.86614 -14.52005 -14.33519 -14.01266 -13.69714 -13.51229 -13.25068 -13.11501 -12.91204 -12.70139 -12.47071 -12.16061 -12.04457 -11.82930 -11.71140 -11.57131 -11.27240 -10.72334 -10.59748 -10.54101 -10.46430 -10.09344 -8.55646 -8.51947 -6.01588 0.60077 1.35626 1.40981 1.54038 1.74545 1.93350 2.27989 2.87739 3.11896 3.14274 3.69370 3.71760 3.79805 4.02074 4.13766 4.19816 4.20204 4.30903 4.35348 4.42696 4.52664 4.55789 4.66122 4.72511 4.76482 4.96174 5.04668 5.05778 5.20462 5.26511 5.33795 5.36812 5.37778 5.47283 5.52701 5.91030 6.50101 7.04666 7.44238 7.99411 8.65377 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.058735 B = 0.003046 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.602086 B = 9190.643501 C = 9459.017991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.563 5.563 10 C 0.449 3.551 11 O -0.619 6.619 12 C -0.098 4.098 13 S -0.239 6.239 14 C -0.087 4.087 15 C -0.065 4.065 16 H 0.066 0.934 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.152 4.152 20 H 0.110 0.890 21 C -0.191 4.191 22 C -0.135 4.135 23 H 0.113 0.887 24 C -0.075 4.075 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 -21.941 -0.771 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.200 5.200 10 C 0.235 3.765 11 O -0.506 6.506 12 C -0.249 4.249 13 S -0.012 6.012 14 C -0.235 4.235 15 C -0.085 4.085 16 H 0.084 0.916 17 C -0.156 4.156 18 C -0.126 4.126 19 C -0.170 4.170 20 H 0.128 0.872 21 C -0.228 4.228 22 C -0.153 4.153 23 H 0.131 0.869 24 C -0.114 4.114 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.126 -21.704 -0.759 21.717 hybrid contribution -1.367 1.040 0.077 1.719 sum -1.240 -20.664 -0.682 20.712 Atomic orbital electron populations 1.69664 1.06852 1.29567 1.49694 1.26074 0.96582 1.02459 0.95869 0.84904 0.77894 0.76619 0.78784 1.19470 1.19277 1.19773 1.19695 0.92777 0.83792 1.50410 0.90243 1.41818 1.09393 1.04359 1.64386 1.19977 0.87890 0.85415 0.83185 1.90532 1.15566 1.87564 1.56896 1.23250 1.00588 0.93490 1.07581 1.87585 1.16053 0.99487 1.98088 1.23620 1.00206 0.93778 1.05882 1.20888 0.96804 0.91996 0.98778 0.91574 1.21694 0.97920 0.98879 0.97074 1.21014 0.97160 0.93049 1.01420 1.22280 1.00402 0.98988 0.95289 0.87195 1.23195 1.02948 1.02876 0.93752 1.21865 0.90142 0.99577 1.03717 0.86945 1.20875 0.96980 0.90553 1.03024 0.91061 0.76702 0.86450 0.86525 0.88943 0.88970 0.90914 0.92420 0.92703 0.90971 0.89748 0.88020 0.90589 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 2 C -0.01 -0.51 5.50 84.92 0.47 -0.04 16 3 Si 0.99 42.92 29.55 68.60 2.03 44.94 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.34 -19.36 9.68 84.04 0.81 -18.55 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.56 -29.31 5.29 -306.99 -1.62 -30.94 16 10 C 0.45 22.14 7.80 87.66 0.68 22.82 16 11 O -0.62 -35.83 15.44 -3.07 -0.05 -35.87 16 12 C -0.10 -3.49 6.42 71.24 0.46 -3.03 16 13 S -0.24 -8.14 19.57 -56.49 -1.11 -9.25 16 14 C -0.09 -1.91 5.40 71.98 0.39 -1.53 16 15 C -0.06 -1.29 1.93 -10.74 -0.02 -1.31 16 16 H 0.07 1.51 7.11 -2.39 -0.02 1.50 16 17 C -0.12 -2.46 5.22 30.65 0.16 -2.30 16 18 C -0.09 -1.67 5.83 30.45 0.18 -1.49 16 19 C -0.15 -2.37 6.19 -10.98 -0.07 -2.44 16 20 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 21 C -0.19 -2.93 9.66 30.59 0.30 -2.63 16 22 C -0.13 -1.93 6.00 -11.64 -0.07 -2.00 16 23 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 24 C -0.08 -1.13 5.22 30.25 0.16 -0.97 16 25 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 26 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 27 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 32 H 0.06 1.50 6.84 -2.38 -0.02 1.48 16 33 H 0.05 1.14 8.06 -2.39 -0.02 1.12 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.49 7.26 -2.39 -0.02 1.48 16 36 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -67.07 321.17 3.29 -63.78 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.31 Total: 29.82 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 3.44 Total: -13.48 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -1.34 Total: -79.94 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.05 Total: -35.87 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.11 Total: -9.25 kcal Total: -67.07 3.29 -63.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598721436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.812 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds