Wall clock time and date at job start Mon Mar 30 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46793 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47237 * 60.00639 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.62041 * 54.99724 * 15 14 13 17 17 C 1.53302 * 109.61893 * 294.63627 * 15 14 13 18 18 C 1.52770 * 108.64884 * 166.00075 * 17 15 14 19 19 C 1.52073 * 110.64036 * 54.61228 * 18 17 15 20 20 H 1.09000 * 114.26374 * 193.88275 * 19 18 17 21 21 C 1.52310 * 119.83826 * 49.67567 * 19 18 17 22 22 C 1.52066 * 120.02529 * 338.41862 * 19 18 17 23 23 H 1.09002 * 116.54062 * 216.98598 * 22 19 18 24 24 C 1.52712 * 120.51956 * 5.28812 * 22 19 18 25 25 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 27 27 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 28 28 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 29 29 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 30 30 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 31 31 H 1.08997 * 109.61955 * 285.56120 * 17 15 14 32 32 H 1.09002 * 109.61491 * 46.10243 * 17 15 14 33 33 H 1.09003 * 109.10709 * 294.37267 * 18 17 15 34 34 H 1.08992 * 109.26713 * 174.96482 * 18 17 15 35 35 H 1.09000 * 117.53623 * 142.80067 * 21 19 18 36 36 H 1.08999 * 117.59743 * 357.52324 * 21 19 18 37 37 H 1.08999 * 109.35501 * 218.31441 * 24 22 19 38 38 H 1.09007 * 109.35665 * 98.73953 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 6 3.5025 -8.6985 0.0131 16 1 4.1620 -8.4788 0.8527 17 6 4.2829 -8.5741 -1.3006 18 6 5.6236 -9.2891 -1.1419 19 6 5.4146 -10.7262 -0.6909 20 1 6.3181 -11.2186 -0.3310 21 6 4.4208 -11.6148 -1.4274 22 6 4.1196 -11.1269 -0.0018 23 1 4.2018 -11.8579 0.8025 24 6 2.9732 -10.1274 0.1362 25 1 -0.4851 0.8400 0.0004 26 1 3.1252 -3.7317 0.8875 27 1 3.1238 -3.7309 -0.8925 28 1 3.8010 -6.1834 0.0019 29 1 1.7221 -7.8710 0.9002 30 1 1.7216 -7.8793 -0.8797 31 1 3.7170 -9.0390 -2.1079 32 1 4.4519 -7.5215 -1.5276 33 1 6.2230 -8.7626 -0.3991 34 1 6.1489 -9.2844 -2.0968 35 1 4.6826 -12.6650 -1.5558 36 1 3.8526 -11.1683 -2.2435 37 1 2.4985 -10.2543 1.1092 38 1 2.2387 -10.3095 -0.6483 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600167065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:22 Heat of formation + Delta-G solvation = -38.063597 kcal Electronic energy + Delta-G solvation = -17789.263936 eV Core-core repulsion = 14950.517993 eV Total energy + Delta-G solvation = -2838.745943 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15788 -38.89645 -35.45568 -32.67699 -32.41453 -31.36406 -29.36175 -26.13582 -25.40848 -24.53890 -21.60286 -21.41388 -20.29023 -18.72605 -17.82359 -16.67776 -16.15749 -15.81320 -15.36919 -14.79560 -14.46267 -14.21526 -14.12499 -13.82248 -13.46140 -13.03882 -12.96239 -12.60980 -12.48642 -12.14168 -11.83961 -11.54791 -11.08735 -11.06127 -11.00721 -10.99316 -10.77320 -10.63477 -10.06162 -9.93354 -9.78979 -9.35493 -9.06685 -8.82232 -8.21319 -6.48461 -6.20696 -3.90947 3.06529 3.14353 3.22307 3.29082 3.33658 3.43039 3.77203 4.21454 4.24812 4.42671 4.47399 4.65494 4.74036 4.85873 4.98260 5.14047 5.14488 5.19985 5.30345 5.36759 5.40318 5.47823 5.60255 5.63884 5.67763 5.79878 5.83373 5.86102 5.91505 5.95278 5.99892 6.03425 6.15869 6.17959 6.67812 7.60939 7.75670 8.36542 8.65978 9.24721 10.86813 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.047724 B = 0.003067 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.570831 B = 9126.598526 C = 9552.216250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.126 3.874 15 C -0.097 4.097 16 H 0.079 0.921 17 C -0.120 4.120 18 C -0.089 4.089 19 C -0.141 4.141 20 H 0.096 0.904 21 C -0.183 4.183 22 C -0.146 4.146 23 H 0.101 0.899 24 C -0.082 4.082 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.397 0.603 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -21.256 -1.132 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.001 3.999 15 C -0.116 4.116 16 H 0.098 0.902 17 C -0.157 4.157 18 C -0.127 4.127 19 C -0.159 4.159 20 H 0.114 0.886 21 C -0.220 4.220 22 C -0.165 4.165 23 H 0.119 0.881 24 C -0.119 4.119 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.231 0.769 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.892 -21.494 -1.132 23.688 hybrid contribution 2.483 1.230 0.006 2.771 sum 12.375 -20.264 -1.125 23.770 Atomic orbital electron populations 1.70032 1.05951 1.27327 1.47001 1.25000 0.95033 0.99048 0.94578 0.86111 0.79578 0.81879 0.77887 1.19621 1.20578 1.20573 1.22910 0.94936 0.91659 1.58752 0.90895 1.85401 1.05026 0.96340 1.96702 1.23531 1.06508 0.95495 1.04869 1.20301 0.86545 0.86299 0.75210 1.90700 1.15397 1.85646 1.47564 1.46015 1.09852 1.05556 1.77827 1.21294 0.95648 0.80626 1.02294 1.21412 0.96804 0.94582 0.98765 0.90230 1.21688 0.95930 1.00868 0.97254 1.20844 0.97521 0.93007 1.01300 1.21830 0.93724 0.96549 1.03814 0.88596 1.23135 1.04084 0.99352 0.95438 1.22201 0.96953 1.01613 0.95686 0.88115 1.20994 0.96075 0.92242 1.02635 0.92250 0.89267 0.89282 0.76890 0.91621 0.91683 0.91603 0.91151 0.91397 0.91496 0.89192 0.88609 0.91137 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.04 7.85 -10.98 -0.09 9.95 16 12 O -0.52 -12.00 15.86 5.55 0.09 -11.91 16 13 N -0.74 -9.92 5.14 -60.30 -0.31 -10.23 16 14 C 0.13 1.47 5.08 -4.04 -0.02 1.45 16 15 C -0.10 -0.83 2.19 -90.53 -0.20 -1.03 16 16 H 0.08 0.67 8.05 -51.93 -0.42 0.26 16 17 C -0.12 -0.97 4.99 -26.69 -0.13 -1.11 16 18 C -0.09 -0.64 5.93 -27.32 -0.16 -0.80 16 19 C -0.14 -1.01 6.00 -91.92 -0.55 -1.56 16 20 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 21 C -0.18 -1.29 9.66 -26.74 -0.26 -1.55 16 22 C -0.15 -1.07 6.19 -90.90 -0.56 -1.63 16 23 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 24 C -0.08 -0.64 5.13 -26.94 -0.14 -0.78 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 26 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 28 H 0.40 4.20 7.75 -40.82 -0.32 3.89 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.56 7.13 -51.93 -0.37 0.19 16 32 H 0.07 0.60 7.01 -51.93 -0.36 0.23 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.70 7.28 -51.93 -0.38 0.33 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -33.63 322.64 -9.59 -43.22 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.04 Total: 0.07 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.69 Total: -12.99 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.42 Total: -35.82 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.63 -9.59 -43.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600167065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.159 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds