Wall clock time and date at job start Mon Mar 30 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46793 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47237 * 60.00639 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.62041 * 54.99724 * 15 14 13 17 17 C 1.53302 * 109.61893 * 294.63627 * 15 14 13 18 18 C 1.52770 * 108.64884 * 166.00075 * 17 15 14 19 19 C 1.52073 * 110.64036 * 54.61228 * 18 17 15 20 20 H 1.09000 * 114.26374 * 193.88275 * 19 18 17 21 21 C 1.52310 * 119.83826 * 49.67567 * 19 18 17 22 22 C 1.52066 * 120.02529 * 338.41862 * 19 18 17 23 23 H 1.09002 * 116.54062 * 216.98598 * 22 19 18 24 24 C 1.52712 * 120.51956 * 5.28812 * 22 19 18 25 25 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 27 27 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 28 28 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 29 29 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 30 30 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 31 31 H 1.08997 * 109.61955 * 285.56120 * 17 15 14 32 32 H 1.09002 * 109.61491 * 46.10243 * 17 15 14 33 33 H 1.09003 * 109.10709 * 294.37267 * 18 17 15 34 34 H 1.08992 * 109.26713 * 174.96482 * 18 17 15 35 35 H 1.09000 * 117.53623 * 142.80067 * 21 19 18 36 36 H 1.08999 * 117.59743 * 357.52324 * 21 19 18 37 37 H 1.08999 * 109.35501 * 218.31441 * 24 22 19 38 38 H 1.09007 * 109.35665 * 98.73953 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 6 3.5025 -8.6985 0.0131 16 1 4.1620 -8.4788 0.8527 17 6 4.2829 -8.5741 -1.3006 18 6 5.6236 -9.2891 -1.1419 19 6 5.4146 -10.7262 -0.6909 20 1 6.3181 -11.2186 -0.3310 21 6 4.4208 -11.6148 -1.4274 22 6 4.1196 -11.1269 -0.0018 23 1 4.2018 -11.8579 0.8025 24 6 2.9732 -10.1274 0.1362 25 1 -0.4851 0.8400 0.0004 26 1 3.1252 -3.7317 0.8875 27 1 3.1238 -3.7309 -0.8925 28 1 3.8010 -6.1834 0.0019 29 1 1.7221 -7.8710 0.9002 30 1 1.7216 -7.8793 -0.8797 31 1 3.7170 -9.0390 -2.1079 32 1 4.4519 -7.5215 -1.5276 33 1 6.2230 -8.7626 -0.3991 34 1 6.1489 -9.2844 -2.0968 35 1 4.6826 -12.6650 -1.5558 36 1 3.8526 -11.1683 -2.2435 37 1 2.4985 -10.2543 1.1092 38 1 2.2387 -10.3095 -0.6483 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600167065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:22 Heat of formation + Delta-G solvation = -59.093533 kcal Electronic energy + Delta-G solvation = -17790.175863 eV Core-core repulsion = 14950.517993 eV Total energy + Delta-G solvation = -2839.657870 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01094 -40.14574 -36.51905 -34.58332 -33.72557 -32.03183 -30.82616 -27.74919 -26.94897 -25.20234 -22.29148 -22.22333 -21.57571 -19.87180 -19.32445 -17.82330 -17.34975 -16.92095 -16.86814 -16.64898 -15.81697 -15.46177 -14.92084 -14.77617 -14.58427 -14.31689 -14.10310 -14.03572 -13.29093 -13.16727 -13.15670 -12.90730 -12.79402 -12.59359 -12.18062 -11.78484 -11.73864 -11.66952 -11.33719 -11.15617 -10.96185 -10.60546 -10.49467 -10.26870 -10.08945 -8.66691 -8.34552 -6.12675 1.27699 1.41988 1.47867 1.59060 1.62176 2.26515 2.31517 2.87818 2.99677 3.32870 3.58603 3.78399 3.85932 3.97727 4.03371 4.11617 4.23147 4.30440 4.35622 4.50234 4.51495 4.58414 4.69072 4.76778 4.85153 4.90142 4.96424 5.06533 5.22386 5.25743 5.33730 5.38776 5.40045 5.41539 5.42475 5.55189 6.20397 6.51670 7.06825 7.25483 8.75006 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.047724 B = 0.003067 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.570831 B = 9126.598526 C = 9552.216250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.125 3.875 15 C -0.084 4.084 16 H 0.089 0.911 17 C -0.119 4.119 18 C -0.088 4.088 19 C -0.142 4.142 20 H 0.105 0.895 21 C -0.185 4.185 22 C -0.150 4.150 23 H 0.108 0.892 24 C -0.082 4.082 25 H 0.271 0.729 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.415 0.585 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.847 -21.698 -1.024 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.002 3.998 15 C -0.103 4.103 16 H 0.107 0.893 17 C -0.157 4.157 18 C -0.125 4.125 19 C -0.160 4.160 20 H 0.123 0.877 21 C -0.222 4.222 22 C -0.168 4.168 23 H 0.127 0.873 24 C -0.120 4.120 25 H 0.080 0.920 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.252 0.748 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.725 -21.976 -1.026 25.415 hybrid contribution 1.650 1.222 -0.038 2.054 sum 14.375 -20.754 -1.063 25.268 Atomic orbital electron populations 1.70195 1.08003 1.28552 1.48112 1.26152 0.95986 1.03389 0.93763 0.84883 0.78615 0.76240 0.78057 1.17962 1.19952 1.19941 1.23236 0.95349 0.91938 1.58713 0.89869 1.85595 1.10696 0.99331 1.97046 1.23375 1.03505 0.94349 1.06829 1.20088 0.86242 0.86750 0.75163 1.90690 1.17505 1.86163 1.50308 1.45762 1.10209 1.05144 1.75317 1.21421 0.96969 0.79999 1.01430 1.21320 0.95489 0.93989 0.99480 0.89303 1.21679 0.96469 1.00895 0.96640 1.20840 0.96822 0.92974 1.01855 1.21905 0.93930 0.96574 1.03568 0.87700 1.23172 1.04061 0.99885 0.95104 1.22216 0.96815 1.01661 0.96133 0.87346 1.20984 0.96398 0.91869 1.02713 0.91999 0.87166 0.87174 0.74751 0.92431 0.92736 0.92171 0.91332 0.90627 0.91035 0.88363 0.89165 0.90814 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.54 -31.20 9.50 67.95 0.65 -30.55 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 11 C 0.53 19.83 7.85 87.66 0.69 20.51 16 12 O -0.57 -26.83 15.86 -3.04 -0.05 -26.87 16 13 N -0.71 -17.93 5.14 -463.07 -2.38 -20.31 16 14 C 0.13 2.82 5.08 86.38 0.44 3.26 16 15 C -0.08 -1.28 2.19 -10.73 -0.02 -1.30 16 16 H 0.09 1.25 8.05 -2.39 -0.02 1.23 16 17 C -0.12 -1.70 4.99 30.62 0.15 -1.55 16 18 C -0.09 -1.04 5.93 30.21 0.18 -0.86 16 19 C -0.14 -1.68 6.00 -11.64 -0.07 -1.75 16 20 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 21 C -0.19 -2.28 9.66 30.59 0.30 -1.98 16 22 C -0.15 -1.89 6.19 -10.98 -0.07 -1.96 16 23 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 24 C -0.08 -1.16 5.13 30.46 0.16 -1.01 16 25 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 27 H 0.11 3.91 8.14 -2.40 -0.02 3.90 16 28 H 0.42 7.62 7.75 -92.71 -0.72 6.90 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 0.94 7.13 -2.39 -0.02 0.92 16 32 H 0.07 1.00 7.01 -2.39 -0.02 0.98 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.21 7.28 -2.39 -0.02 1.19 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 0.99 8.06 -2.38 -0.02 0.97 16 Total: -1.00 -74.23 322.64 2.35 -71.88 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.32 Total: 16.19 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 3.30 Total: -20.76 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.10 Total: -76.36 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -74.23 2.35 -71.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600167065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.791 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds