Wall clock time and date at job start Mon Mar 30 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47465 * 240.00088 * 3 2 1 5 5 H 1.48502 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47082 * 120.00155 * 3 2 1 7 7 C 1.37877 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47372 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99661 * 269.99917 * 10 9 7 12 12 C 1.53005 * 109.47113 * 269.99897 * 11 10 9 13 13 C 1.52998 * 117.49871 * 243.62496 * 12 11 10 14 14 C 1.52996 * 60.00087 * 252.51266 * 13 12 11 15 15 C 1.34769 * 120.00125 * 89.99933 * 10 9 7 16 16 O 1.21283 * 120.00152 * 0.02562 * 15 10 9 17 17 C 1.50704 * 120.00205 * 179.97438 * 15 10 9 18 18 C 1.53001 * 109.47293 * 180.02562 * 17 15 10 19 19 C 1.55885 * 110.82198 * 175.00120 * 18 17 15 20 20 S 1.83083 * 82.48198 * 142.75572 * 19 18 17 21 21 C 1.56011 * 110.86795 * 288.60501 * 18 17 15 22 22 H 0.96999 * 119.99990 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46849 * 59.99948 * 9 7 2 24 24 H 1.09000 * 109.46884 * 300.00409 * 9 7 2 25 25 H 1.08999 * 109.47508 * 30.00164 * 11 10 9 26 26 H 1.09008 * 109.46860 * 150.00338 * 11 10 9 27 27 H 1.08989 * 115.54866 * 29.33302 * 12 11 10 28 28 H 1.09003 * 117.50077 * 359.97438 * 13 12 11 29 29 H 1.08998 * 117.49990 * 145.01923 * 13 12 11 30 30 H 1.09000 * 117.49959 * 252.51288 * 14 13 12 31 31 H 1.09004 * 117.50318 * 107.49257 * 14 13 12 32 32 H 1.08995 * 109.47372 * 59.99994 * 17 15 10 33 33 H 1.09006 * 109.47229 * 300.00095 * 17 15 10 34 34 H 1.08995 * 110.40126 * 51.82338 * 18 17 15 35 35 H 1.09002 * 114.38293 * 29.34356 * 19 18 17 36 36 H 1.09002 * 114.37878 * 256.16630 * 19 18 17 37 37 H 1.09006 * 114.37363 * 103.87421 * 21 18 17 38 38 H 1.09007 * 114.41471 * 330.67720 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6789 -4.1694 -1.2693 12 6 1.7482 -5.3006 -1.7110 13 6 2.3401 -6.7087 -1.7993 14 6 2.0086 -5.9366 -3.0779 15 6 2.6409 -4.1249 1.1666 16 8 2.2465 -3.6643 2.2170 17 6 3.6198 -5.2707 1.1666 18 6 3.9508 -5.6587 2.6091 19 6 4.8631 -6.9221 2.6476 20 16 5.6265 -6.0324 4.0539 21 6 4.8367 -4.5688 3.2884 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8897 25 1 2.6867 -3.3877 -2.0290 26 1 3.6884 -4.5595 -1.1390 27 1 0.7114 -5.2096 -1.3875 28 1 3.3928 -6.8291 -1.5432 29 1 1.6927 -7.5444 -1.5338 30 1 1.1430 -6.2644 -3.6536 31 1 2.8429 -5.5492 -3.6626 32 1 4.5323 -4.9690 0.6526 33 1 3.1790 -6.1252 0.6530 34 1 3.0357 -5.8241 3.1776 35 1 5.5132 -7.0343 1.7800 36 1 4.3469 -7.8416 2.9238 37 1 4.3024 -3.9275 3.9894 38 1 5.4795 -4.0182 2.6015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601036921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:25 Heat of formation + Delta-G solvation = 2.877369 kcal Electronic energy + Delta-G solvation = -18877.443999 eV Core-core repulsion = 16040.473389 eV Total energy + Delta-G solvation = -2836.970610 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.43483 -37.33018 -35.89168 -34.34637 -32.56069 -29.13047 -27.43188 -26.92922 -25.86832 -22.89024 -22.34445 -20.74141 -20.30548 -18.42129 -16.72142 -16.49221 -16.36747 -15.82508 -15.18437 -14.81252 -14.67989 -14.16954 -13.83315 -13.11651 -13.05234 -12.88811 -12.64239 -12.24554 -12.15408 -11.84164 -11.55750 -11.46849 -11.24792 -11.21463 -11.07966 -10.90445 -10.61981 -10.36974 -10.11838 -9.85940 -9.65438 -9.44194 -8.85932 -8.44858 -7.75510 -7.70126 -6.06010 -4.10842 1.70517 2.12438 3.30116 3.34945 3.35508 3.41419 3.73853 3.95091 4.39908 4.47417 4.52279 4.76889 4.86388 4.99014 5.04002 5.24477 5.28122 5.30319 5.35648 5.43266 5.53071 5.61521 5.63528 5.74900 5.82584 5.89064 5.95330 6.05724 6.13232 6.17862 6.41828 7.04436 7.42463 7.52060 7.90159 8.21607 8.39848 8.87932 9.07077 9.54376 11.02054 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.006303 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.336537 B = 4440.979651 C = 6024.639214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.246 3.754 10 N -0.595 5.595 11 C 0.142 3.858 12 C -0.165 4.165 13 C -0.186 4.186 14 C -0.177 4.177 15 C 0.507 3.493 16 O -0.539 6.539 17 C -0.139 4.139 18 C -0.095 4.095 19 C -0.062 4.062 20 S -0.342 6.342 21 C -0.039 4.039 22 H 0.264 0.736 23 H 0.031 0.969 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 -14.358 -2.956 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.127 3.873 10 N -0.326 5.326 11 C 0.018 3.982 12 C -0.184 4.184 13 C -0.223 4.223 14 C -0.214 4.214 15 C 0.294 3.706 16 O -0.417 6.417 17 C -0.181 4.181 18 C -0.115 4.115 19 C -0.211 4.211 20 S -0.116 6.116 21 C -0.187 4.187 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.885 -14.244 -1.294 16.332 hybrid contribution -0.205 1.183 -1.119 1.642 sum 7.680 -13.061 -2.413 15.342 Atomic orbital electron populations 1.69915 1.05991 1.27118 1.50307 1.24922 0.94857 0.99164 0.95072 0.86585 0.79553 0.82832 0.78606 1.20265 1.21168 1.20199 1.21378 0.93244 0.90692 1.51225 0.92584 1.19267 0.87514 0.82145 0.98354 1.48189 1.45699 1.34697 1.03975 1.21011 0.95027 0.94635 0.87552 1.22941 1.01478 0.93849 1.00143 1.23050 1.01401 0.95276 1.02542 1.22897 1.03380 1.04390 0.90759 1.20245 0.82352 0.83832 0.84215 1.90668 1.58417 1.61747 1.30866 1.21951 1.00015 0.98842 0.97298 1.23227 1.00452 0.90870 0.96970 1.24823 0.99148 1.00059 0.97038 1.88422 1.74975 1.10552 1.37624 1.24850 0.97718 0.95774 1.00345 0.92661 0.95062 0.93911 0.89543 0.91481 0.87409 0.88898 0.89174 0.89008 0.88756 0.89389 0.88714 0.87230 0.87744 0.87376 0.86580 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.25 6.23 5.16 -5.20 -0.03 6.20 16 10 N -0.59 -11.79 2.46 -175.06 -0.43 -12.22 16 11 C 0.14 2.15 5.49 -4.04 -0.02 2.13 16 12 C -0.16 -2.14 5.95 -90.62 -0.54 -2.68 16 13 C -0.19 -1.85 9.18 -26.73 -0.25 -2.10 16 14 C -0.18 -1.85 10.25 -26.73 -0.27 -2.12 16 15 C 0.51 9.68 7.51 -10.99 -0.08 9.60 16 16 O -0.54 -12.60 14.91 5.55 0.08 -12.52 16 17 C -0.14 -1.82 3.80 -27.88 -0.11 -1.92 16 18 C -0.10 -1.22 2.38 -87.47 -0.21 -1.43 16 19 C -0.06 -0.63 8.51 38.70 0.33 -0.30 16 20 S -0.34 -4.60 24.06 -107.50 -2.59 -7.19 16 21 C -0.04 -0.55 7.69 38.77 0.30 -0.25 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 24 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 25 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 26 H 0.07 0.84 6.17 -51.92 -0.32 0.52 16 27 H 0.11 1.61 8.14 -51.94 -0.42 1.18 16 28 H 0.09 0.81 7.87 -51.93 -0.41 0.40 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.02 7.35 -51.93 -0.38 0.64 16 33 H 0.09 1.05 6.84 -51.93 -0.36 0.69 16 34 H 0.11 1.57 7.87 -51.93 -0.41 1.17 16 35 H 0.10 0.88 8.10 -51.93 -0.42 0.45 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.12 1.81 8.14 -51.93 -0.42 1.38 16 38 H 0.10 1.37 8.07 -51.92 -0.42 0.95 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -31.60 327.16 -9.61 -41.20 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.02 Total: 0.86 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.30 Total: -6.11 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.31 Total: -37.75 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -2.59 Total: -7.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.60 -9.61 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.080 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds