Wall clock time and date at job start Mon Mar 30 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47465 * 240.00088 * 3 2 1 5 5 H 1.48502 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47082 * 120.00155 * 3 2 1 7 7 C 1.37877 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47372 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99661 * 269.99917 * 10 9 7 12 12 C 1.53005 * 109.47113 * 269.99897 * 11 10 9 13 13 C 1.52998 * 117.49871 * 243.62496 * 12 11 10 14 14 C 1.52996 * 60.00087 * 252.51266 * 13 12 11 15 15 C 1.34769 * 120.00125 * 89.99933 * 10 9 7 16 16 O 1.21283 * 120.00152 * 0.02562 * 15 10 9 17 17 C 1.50704 * 120.00205 * 179.97438 * 15 10 9 18 18 C 1.53001 * 109.47293 * 180.02562 * 17 15 10 19 19 C 1.55885 * 110.82198 * 175.00120 * 18 17 15 20 20 S 1.83083 * 82.48198 * 142.75572 * 19 18 17 21 21 C 1.56011 * 110.86795 * 288.60501 * 18 17 15 22 22 H 0.96999 * 119.99990 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46849 * 59.99948 * 9 7 2 24 24 H 1.09000 * 109.46884 * 300.00409 * 9 7 2 25 25 H 1.08999 * 109.47508 * 30.00164 * 11 10 9 26 26 H 1.09008 * 109.46860 * 150.00338 * 11 10 9 27 27 H 1.08989 * 115.54866 * 29.33302 * 12 11 10 28 28 H 1.09003 * 117.50077 * 359.97438 * 13 12 11 29 29 H 1.08998 * 117.49990 * 145.01923 * 13 12 11 30 30 H 1.09000 * 117.49959 * 252.51288 * 14 13 12 31 31 H 1.09004 * 117.50318 * 107.49257 * 14 13 12 32 32 H 1.08995 * 109.47372 * 59.99994 * 17 15 10 33 33 H 1.09006 * 109.47229 * 300.00095 * 17 15 10 34 34 H 1.08995 * 110.40126 * 51.82338 * 18 17 15 35 35 H 1.09002 * 114.38293 * 29.34356 * 19 18 17 36 36 H 1.09002 * 114.37878 * 256.16630 * 19 18 17 37 37 H 1.09006 * 114.37363 * 103.87421 * 21 18 17 38 38 H 1.09007 * 114.41471 * 330.67720 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6789 -4.1694 -1.2693 12 6 1.7482 -5.3006 -1.7110 13 6 2.3401 -6.7087 -1.7993 14 6 2.0086 -5.9366 -3.0779 15 6 2.6409 -4.1249 1.1666 16 8 2.2465 -3.6643 2.2170 17 6 3.6198 -5.2707 1.1666 18 6 3.9508 -5.6587 2.6091 19 6 4.8631 -6.9221 2.6476 20 16 5.6265 -6.0324 4.0539 21 6 4.8367 -4.5688 3.2884 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8897 25 1 2.6867 -3.3877 -2.0290 26 1 3.6884 -4.5595 -1.1390 27 1 0.7114 -5.2096 -1.3875 28 1 3.3928 -6.8291 -1.5432 29 1 1.6927 -7.5444 -1.5338 30 1 1.1430 -6.2644 -3.6536 31 1 2.8429 -5.5492 -3.6626 32 1 4.5323 -4.9690 0.6526 33 1 3.1790 -6.1252 0.6530 34 1 3.0357 -5.8241 3.1776 35 1 5.5132 -7.0343 1.7800 36 1 4.3469 -7.8416 2.9238 37 1 4.3024 -3.9275 3.9894 38 1 5.4795 -4.0182 2.6015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601036921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:24 Heat of formation + Delta-G solvation = -15.363668 kcal Electronic energy + Delta-G solvation = -18878.234989 eV Core-core repulsion = 16040.473389 eV Total energy + Delta-G solvation = -2837.761600 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88556 -38.39360 -37.05645 -35.94425 -34.56862 -30.67860 -28.89053 -27.88796 -27.39659 -24.79869 -23.12598 -21.84648 -21.42384 -19.82236 -18.59361 -18.04012 -17.47942 -17.16750 -16.73302 -16.10423 -15.90357 -15.71863 -14.85686 -14.51977 -14.29600 -14.01953 -13.95707 -13.78040 -13.58904 -13.23547 -12.89727 -12.82104 -12.58368 -12.54265 -12.36217 -12.20763 -12.18940 -12.08694 -11.71927 -11.20508 -10.85305 -10.63909 -10.56746 -10.27055 -9.38923 -8.79250 -8.21521 -6.36261 0.72731 1.15734 1.36163 1.40188 1.47286 1.91896 2.29788 2.45687 3.01460 3.08032 3.41695 3.50396 3.75249 3.88609 4.02563 4.10465 4.19596 4.36134 4.37743 4.48518 4.56367 4.65994 4.67995 4.81236 4.82649 4.88814 4.92787 5.06409 5.13034 5.15745 5.25885 5.38079 5.38851 5.58538 5.87933 6.07890 6.71934 6.86532 7.30282 7.55701 8.85236 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.006303 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.336537 B = 4440.979651 C = 6024.639214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.264 3.736 10 N -0.601 5.601 11 C 0.142 3.858 12 C -0.195 4.195 13 C -0.160 4.160 14 C -0.167 4.167 15 C 0.496 3.504 16 O -0.594 6.594 17 C -0.120 4.120 18 C -0.094 4.094 19 C -0.027 4.027 20 S -0.384 6.384 21 C -0.044 4.044 22 H 0.266 0.734 23 H 0.016 0.984 24 H -0.006 1.006 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.017 -16.433 -4.721 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.073 0.927 9 C 0.142 3.858 10 N -0.331 5.331 11 C 0.020 3.980 12 C -0.214 4.214 13 C -0.197 4.197 14 C -0.205 4.205 15 C 0.286 3.714 16 O -0.476 6.476 17 C -0.161 4.161 18 C -0.114 4.114 19 C -0.174 4.174 20 S -0.159 6.159 21 C -0.192 4.192 22 H 0.075 0.925 23 H 0.034 0.966 24 H 0.012 0.988 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.427 -16.362 -3.097 19.648 hybrid contribution -1.053 1.784 -0.577 2.151 sum 9.374 -14.578 -3.674 17.717 Atomic orbital electron populations 1.70048 1.07621 1.28118 1.51179 1.25848 0.95741 1.03020 0.94562 0.85514 0.78339 0.78246 0.79005 1.18374 1.20539 1.20329 1.21689 0.93297 0.91902 1.50945 0.92658 1.18642 0.88031 0.83950 0.95185 1.48174 1.44820 1.33589 1.06493 1.21230 0.97276 0.94784 0.84733 1.22647 0.99738 0.95606 1.03416 1.23213 1.02770 0.92933 1.00742 1.23009 1.03968 1.03291 0.90219 1.21396 0.82478 0.84694 0.82880 1.90646 1.60423 1.63729 1.32777 1.21935 0.99177 0.96865 0.98150 1.23209 1.00013 0.91975 0.96239 1.25017 0.97528 0.98951 0.95938 1.88592 1.75318 1.11460 1.40502 1.24776 0.98076 0.96113 1.00239 0.92507 0.96586 0.98754 0.91362 0.87644 0.90554 0.86193 0.88238 0.88643 0.87390 0.86441 0.85530 0.89420 0.84381 0.85099 0.89529 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.54 -30.83 9.39 25.60 0.24 -30.59 16 8 H 0.06 3.09 7.81 -2.91 -0.02 3.06 16 9 C 0.26 14.11 5.16 85.63 0.44 14.56 16 10 N -0.60 -24.23 2.46 -826.14 -2.03 -26.26 16 11 C 0.14 4.10 5.49 86.38 0.47 4.58 16 12 C -0.19 -4.75 5.95 -10.79 -0.06 -4.82 16 13 C -0.16 -2.47 9.18 30.59 0.28 -2.19 16 14 C -0.17 -2.98 10.25 30.59 0.31 -2.66 16 15 C 0.50 19.02 7.51 87.66 0.66 19.68 16 16 O -0.59 -29.20 14.91 -3.04 -0.05 -29.24 16 17 C -0.12 -2.75 3.80 29.85 0.11 -2.64 16 18 C -0.09 -2.23 2.38 -8.75 -0.02 -2.25 16 19 C -0.03 -0.43 8.51 72.98 0.62 0.19 16 20 S -0.38 -9.77 24.06 -56.49 -1.36 -11.13 16 21 C -0.04 -1.22 7.69 73.03 0.56 -0.66 16 22 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 23 H 0.02 0.89 8.07 -2.38 -0.02 0.87 16 24 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 25 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 26 H 0.11 2.19 6.17 -2.38 -0.01 2.17 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 28 H 0.12 1.26 7.87 -2.39 -0.02 1.24 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.12 2.10 7.35 -2.39 -0.02 2.09 16 33 H 0.13 2.15 6.84 -2.38 -0.02 2.14 16 34 H 0.09 2.49 7.87 -2.39 -0.02 2.47 16 35 H 0.14 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.11 2.83 8.07 -2.38 -0.02 2.81 16 Total: -1.00 -74.82 327.16 3.99 -70.83 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.03 Total: 11.18 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 4.08 Total: -5.92 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.74 Total: -82.56 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: -9.77 SS G_CDS: -1.36 Total: -11.13 kcal Total: -74.82 3.99 -70.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.465 kcal (2) G-P(sol) polarization free energy of solvation -74.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds