Wall clock time and date at job start Mon Mar 30 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47165 * 299.99768 * 3 2 1 6 6 H 1.48500 * 109.47279 * 59.99649 * 3 2 1 7 7 C 1.37879 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99678 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99925 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.43615 * 57.45889 * 9 7 2 11 11 C 1.54893 * 110.48463 * 294.76845 * 9 7 2 12 12 C 1.54887 * 102.74533 * 203.38295 * 11 9 7 13 13 C 1.54266 * 104.19888 * 37.94403 * 12 11 9 14 14 H 1.09005 * 110.03005 * 217.10316 * 13 12 11 15 15 N 1.46504 * 110.03104 * 95.72340 * 13 12 11 16 16 C 1.34770 * 119.99927 * 86.45288 * 15 13 12 17 17 O 1.21280 * 120.00292 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99674 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.46918 * 180.02562 * 18 16 15 20 20 C 1.53040 * 113.15242 * 275.54703 * 19 18 16 21 21 S 1.81503 * 89.86673 * 211.86933 * 20 19 18 22 22 C 1.53042 * 113.15351 * 175.12166 * 19 18 16 23 23 C 1.53872 * 106.59640 * 336.38805 * 13 12 11 24 24 H 0.97002 * 120.00301 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.75228 * 85.07031 * 11 9 7 26 26 H 1.09000 * 110.75571 * 321.69664 * 11 9 7 27 27 H 1.09001 * 110.48816 * 279.26329 * 12 11 9 28 28 H 1.09004 * 110.48531 * 156.62545 * 12 11 9 29 29 H 0.97003 * 119.99669 * 266.45773 * 15 13 12 30 30 H 1.09001 * 109.47469 * 300.00007 * 18 16 15 31 31 H 1.09002 * 109.47208 * 60.00579 * 18 16 15 32 32 H 1.08999 * 112.49995 * 45.33265 * 19 18 16 33 33 H 1.09003 * 113.14904 * 327.11178 * 20 19 18 34 34 H 1.09001 * 113.14832 * 96.59854 * 20 19 18 35 35 H 1.09007 * 113.14761 * 263.40991 * 22 19 18 36 36 H 1.09002 * 113.14799 * 32.84444 * 22 19 18 37 37 H 1.09002 * 110.03208 * 119.28196 * 23 13 12 38 38 H 1.09000 * 110.03462 * 240.66592 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5852 -2.5542 -0.8607 11 6 0.4529 -2.6643 1.3178 12 6 0.2749 -4.1996 1.4193 13 6 1.6119 -4.7704 0.9031 14 1 1.4328 -5.6789 0.3280 15 7 2.5032 -5.0577 2.0298 16 6 2.4284 -6.2454 2.6624 17 8 1.6235 -7.0765 2.2987 18 6 3.3456 -6.5410 3.8210 19 6 3.0571 -7.9458 4.3543 20 6 1.8997 -7.9836 5.3549 21 16 2.7019 -9.3602 6.2243 22 6 4.0231 -8.3803 5.4589 23 6 2.2325 -3.6893 0.0011 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5145 -2.1670 1.2482 26 1 1.0236 -2.2847 2.1653 27 1 -0.5501 -4.5305 0.7884 28 1 0.1076 -4.4966 2.4546 29 1 3.1472 -4.3930 2.3205 30 1 4.3819 -6.4852 3.4876 31 1 3.1786 -5.8103 4.6124 32 1 2.9584 -8.6825 3.5570 33 1 1.8264 -7.0796 5.9596 34 1 0.9486 -8.2598 4.8998 35 1 4.8494 -8.9885 5.0907 36 1 4.3603 -7.5528 6.0832 37 1 3.1971 -3.3774 0.4015 38 1 2.3554 -4.0733 -1.0116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601606128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:15 Heat of formation + Delta-G solvation = -39.406116 kcal Electronic energy + Delta-G solvation = -18418.197956 eV Core-core repulsion = 15579.393797 eV Total energy + Delta-G solvation = -2838.804159 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85353 -37.60289 -36.44420 -33.59593 -32.03299 -29.41845 -28.17446 -26.79021 -26.50718 -23.87721 -21.60983 -20.22419 -19.46797 -19.12168 -17.11049 -16.71887 -16.49550 -15.99260 -15.18230 -15.07365 -14.66227 -14.16216 -13.67253 -13.47143 -13.20640 -13.06702 -12.76080 -12.37647 -12.07101 -11.73231 -11.56106 -11.06989 -11.05114 -10.97283 -10.87360 -10.56744 -10.45876 -10.34200 -9.99536 -9.63469 -9.52881 -9.25329 -8.85122 -8.62275 -8.39894 -8.01739 -6.05263 -4.08560 1.57329 1.71124 2.81688 3.25557 3.34355 3.36491 3.41045 4.09402 4.39550 4.45900 4.59931 4.89513 5.02244 5.12181 5.16565 5.26442 5.30922 5.36777 5.53086 5.57591 5.63318 5.78457 5.91997 6.28494 6.30621 6.56390 6.60067 6.71558 6.88623 6.90489 7.21452 7.30088 7.65989 7.80094 7.83090 7.98218 8.38618 8.46115 8.94382 9.55780 11.04163 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038303 B = 0.003410 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.833867 B = 8210.233883 C = 8404.916684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.033 0.967 11 C -0.099 4.099 12 C -0.135 4.135 13 C 0.139 3.861 14 H 0.075 0.925 15 N -0.714 5.714 16 C 0.508 3.492 17 O -0.547 6.547 18 C -0.133 4.133 19 C -0.072 4.072 20 C -0.072 4.072 21 S -0.308 6.308 22 C -0.079 4.079 23 C -0.122 4.122 24 H 0.259 0.741 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.400 0.600 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -12.085 9.010 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.137 4.137 12 C -0.174 4.174 13 C 0.036 3.964 14 H 0.093 0.907 15 N -0.365 5.365 16 C 0.294 3.706 17 O -0.425 6.425 18 C -0.176 4.176 19 C -0.092 4.092 20 C -0.220 4.220 21 S -0.081 6.081 22 C -0.228 4.228 23 C -0.161 4.161 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.234 0.766 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.472 -13.757 9.574 17.967 hybrid contribution 0.899 2.272 -0.347 2.468 sum 7.372 -11.485 9.227 16.474 Atomic orbital electron populations 1.69967 1.05883 1.26369 1.50387 1.24990 0.94830 0.99042 0.95111 0.86599 0.80113 0.84065 0.77574 1.19842 1.21082 1.21108 1.21198 0.92658 0.90476 1.50908 0.92673 1.19472 0.92480 0.91125 0.94064 0.94908 1.22453 1.01311 0.90489 0.99477 1.22835 0.95867 0.99223 0.99472 1.21772 0.89986 0.98316 0.86372 0.90697 1.46330 1.39431 1.16572 1.34117 1.20475 0.84236 0.82118 0.83776 1.90686 1.38580 1.46869 1.66369 1.21727 1.00846 0.97254 0.97747 1.22299 0.92089 0.97906 0.96912 1.24437 1.03266 0.96908 0.97398 1.89007 1.08944 1.36102 1.74050 1.24407 0.99878 1.00300 0.98207 1.22606 1.00355 0.95945 0.97147 0.93105 0.91527 0.93514 0.92101 0.93219 0.76566 0.88055 0.88393 0.86184 0.87885 0.87990 0.88425 0.87665 0.92034 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 12.29 55.43 0.68 -24.09 16 2 C 0.06 1.66 5.35 -17.82 -0.10 1.56 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.31 8.46 -34.44 -0.29 -13.60 16 8 H 0.06 1.40 7.54 -52.49 -0.40 1.00 16 9 C 0.05 1.10 2.72 -90.11 -0.25 0.86 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.18 5.75 -24.74 -0.14 -2.32 16 12 C -0.14 -2.52 6.53 -25.07 -0.16 -2.69 16 13 C 0.14 2.38 3.22 -66.81 -0.22 2.16 16 14 H 0.07 1.33 7.61 -51.93 -0.39 0.93 16 15 N -0.71 -9.92 5.04 -52.72 -0.27 -10.19 16 16 C 0.51 6.73 7.82 -10.99 -0.09 6.64 16 17 O -0.55 -9.26 15.46 5.56 0.09 -9.18 16 18 C -0.13 -1.13 5.47 -27.88 -0.15 -1.28 16 19 C -0.07 -0.65 2.79 -90.58 -0.25 -0.90 16 20 C -0.07 -0.71 7.49 37.18 0.28 -0.43 16 21 S -0.31 -3.36 24.80 -107.50 -2.67 -6.03 16 22 C -0.08 -0.61 7.50 37.18 0.28 -0.33 16 23 C -0.12 -2.30 6.13 -25.61 -0.16 -2.46 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.07 1.63 7.55 -51.93 -0.39 1.23 16 26 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 29 H 0.40 4.79 8.30 -40.82 -0.34 4.45 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.68 7.90 -51.93 -0.41 0.27 16 32 H 0.12 1.29 7.72 -51.93 -0.40 0.88 16 33 H 0.10 0.89 7.95 -51.93 -0.41 0.47 16 34 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.06 1.11 7.12 -51.93 -0.37 0.74 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -29.74 320.73 -9.64 -39.38 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.04 Total: 2.59 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.24 Total: -12.80 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.42 Total: -34.28 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.67 Total: -6.03 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.74 -9.64 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601606128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.027 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds