Wall clock time and date at job start Mon Mar 30 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47165 * 299.99768 * 3 2 1 6 6 H 1.48500 * 109.47279 * 59.99649 * 3 2 1 7 7 C 1.37879 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99678 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99925 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.43615 * 57.45889 * 9 7 2 11 11 C 1.54893 * 110.48463 * 294.76845 * 9 7 2 12 12 C 1.54887 * 102.74533 * 203.38295 * 11 9 7 13 13 C 1.54266 * 104.19888 * 37.94403 * 12 11 9 14 14 H 1.09005 * 110.03005 * 217.10316 * 13 12 11 15 15 N 1.46504 * 110.03104 * 95.72340 * 13 12 11 16 16 C 1.34770 * 119.99927 * 86.45288 * 15 13 12 17 17 O 1.21280 * 120.00292 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99674 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.46918 * 180.02562 * 18 16 15 20 20 C 1.53040 * 113.15242 * 275.54703 * 19 18 16 21 21 S 1.81503 * 89.86673 * 211.86933 * 20 19 18 22 22 C 1.53042 * 113.15351 * 175.12166 * 19 18 16 23 23 C 1.53872 * 106.59640 * 336.38805 * 13 12 11 24 24 H 0.97002 * 120.00301 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.75228 * 85.07031 * 11 9 7 26 26 H 1.09000 * 110.75571 * 321.69664 * 11 9 7 27 27 H 1.09001 * 110.48816 * 279.26329 * 12 11 9 28 28 H 1.09004 * 110.48531 * 156.62545 * 12 11 9 29 29 H 0.97003 * 119.99669 * 266.45773 * 15 13 12 30 30 H 1.09001 * 109.47469 * 300.00007 * 18 16 15 31 31 H 1.09002 * 109.47208 * 60.00579 * 18 16 15 32 32 H 1.08999 * 112.49995 * 45.33265 * 19 18 16 33 33 H 1.09003 * 113.14904 * 327.11178 * 20 19 18 34 34 H 1.09001 * 113.14832 * 96.59854 * 20 19 18 35 35 H 1.09007 * 113.14761 * 263.40991 * 22 19 18 36 36 H 1.09002 * 113.14799 * 32.84444 * 22 19 18 37 37 H 1.09002 * 110.03208 * 119.28196 * 23 13 12 38 38 H 1.09000 * 110.03462 * 240.66592 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5852 -2.5542 -0.8607 11 6 0.4529 -2.6643 1.3178 12 6 0.2749 -4.1996 1.4193 13 6 1.6119 -4.7704 0.9031 14 1 1.4328 -5.6789 0.3280 15 7 2.5032 -5.0577 2.0298 16 6 2.4284 -6.2454 2.6624 17 8 1.6235 -7.0765 2.2987 18 6 3.3456 -6.5410 3.8210 19 6 3.0571 -7.9458 4.3543 20 6 1.8997 -7.9836 5.3549 21 16 2.7019 -9.3602 6.2243 22 6 4.0231 -8.3803 5.4589 23 6 2.2325 -3.6893 0.0011 24 1 -0.4851 0.8400 -0.0004 25 1 -0.5145 -2.1670 1.2482 26 1 1.0236 -2.2847 2.1653 27 1 -0.5501 -4.5305 0.7884 28 1 0.1076 -4.4966 2.4546 29 1 3.1472 -4.3930 2.3205 30 1 4.3819 -6.4852 3.4876 31 1 3.1786 -5.8103 4.6124 32 1 2.9584 -8.6825 3.5570 33 1 1.8264 -7.0796 5.9596 34 1 0.9486 -8.2598 4.8998 35 1 4.8494 -8.9885 5.0907 36 1 4.3603 -7.5528 6.0832 37 1 3.1971 -3.3774 0.4015 38 1 2.3554 -4.0733 -1.0116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601606128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:15 Heat of formation + Delta-G solvation = -56.866752 kcal Electronic energy + Delta-G solvation = -18418.955106 eV Core-core repulsion = 15579.393797 eV Total energy + Delta-G solvation = -2839.561309 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.97375 -38.91322 -37.45008 -35.15392 -33.72181 -30.47009 -29.82424 -28.26761 -27.19176 -25.71967 -22.64041 -21.32954 -20.85431 -20.65191 -18.49101 -18.12959 -17.47638 -16.99171 -16.57603 -16.33026 -16.12694 -15.62234 -14.89867 -14.47203 -14.26305 -14.10905 -13.84722 -13.76111 -13.50861 -12.95041 -12.81135 -12.75743 -12.42950 -12.30502 -12.25470 -12.15448 -11.68514 -11.62626 -11.42740 -11.11032 -11.04678 -10.78100 -10.63241 -10.42745 -9.87341 -8.85600 -8.07851 -6.17302 0.87914 0.97232 1.43544 1.46528 1.56538 1.80396 2.36843 2.47661 3.23786 3.36452 3.77006 3.80615 3.99445 4.06101 4.16112 4.26438 4.38809 4.46699 4.54694 4.67483 4.71424 4.74329 4.82262 4.86720 4.98766 5.04951 5.14887 5.22437 5.22837 5.31516 5.47146 5.69491 5.77602 5.94694 6.02679 6.40926 6.75945 6.94959 7.43162 7.50609 9.01193 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038303 B = 0.003410 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.833867 B = 8210.233883 C = 8404.916684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.037 3.963 10 H -0.004 1.004 11 C -0.088 4.088 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.071 0.929 15 N -0.710 5.710 16 C 0.506 3.494 17 O -0.588 6.588 18 C -0.120 4.120 19 C -0.069 4.069 20 C -0.064 4.064 21 S -0.378 6.378 22 C -0.051 4.051 23 C -0.110 4.110 24 H 0.258 0.742 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.413 0.587 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.176 -11.817 10.071 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.779 3.221 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.018 3.982 10 H 0.014 0.986 11 C -0.126 4.126 12 C -0.164 4.164 13 C 0.047 3.953 14 H 0.090 0.910 15 N -0.362 5.362 16 C 0.294 3.706 17 O -0.468 6.468 18 C -0.162 4.162 19 C -0.089 4.089 20 C -0.212 4.212 21 S -0.152 6.152 22 C -0.198 4.198 23 C -0.148 4.148 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.249 0.751 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.118 0.882 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.213 -13.492 10.649 19.502 hybrid contribution 0.018 2.177 -0.715 2.291 sum 9.231 -11.315 9.934 17.661 Atomic orbital electron populations 1.70111 1.07395 1.26963 1.51729 1.25786 0.95560 1.02508 0.95115 0.85591 0.79422 0.79938 0.77192 1.18502 1.21383 1.20990 1.21598 0.93110 0.91554 1.49884 0.92082 1.19460 0.93065 0.92467 0.93188 0.98558 1.22210 0.99160 0.92603 0.98641 1.22720 0.97028 0.96628 1.00015 1.21375 0.89460 0.97290 0.87197 0.91038 1.46201 1.39143 1.17452 1.33355 1.21310 0.84087 0.80942 0.84232 1.90686 1.40472 1.47982 1.67673 1.21751 1.01211 0.97038 0.96188 1.22185 0.92182 0.98029 0.96542 1.24515 1.02632 0.96633 0.97414 1.89324 1.12874 1.38190 1.74796 1.24434 0.98504 1.00103 0.96806 1.22412 0.99642 0.94485 0.98250 0.93334 0.94931 0.93809 0.92663 0.92359 0.75059 0.84672 0.85673 0.88219 0.86092 0.90151 0.86983 0.84943 0.90675 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.58 12.29 21.45 0.26 -52.31 16 2 C 0.01 0.46 5.35 84.66 0.45 0.92 16 3 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.52 -26.92 8.46 25.60 0.22 -26.70 16 8 H 0.06 3.00 7.54 -2.91 -0.02 2.98 16 9 C 0.04 1.74 2.72 -10.46 -0.03 1.71 16 10 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 11 C -0.09 -3.91 5.75 31.89 0.18 -3.72 16 12 C -0.13 -4.61 6.53 31.67 0.21 -4.41 16 13 C 0.15 4.96 3.22 45.71 0.15 5.11 16 14 H 0.07 2.44 7.61 -2.38 -0.02 2.42 16 15 N -0.71 -17.67 5.04 -439.10 -2.21 -19.88 16 16 C 0.51 11.96 7.82 87.66 0.69 12.65 16 17 O -0.59 -19.11 15.46 -3.03 -0.05 -19.16 16 18 C -0.12 -1.50 5.47 29.85 0.16 -1.34 16 19 C -0.07 -1.06 2.79 -10.77 -0.03 -1.09 16 20 C -0.06 -1.17 7.49 72.00 0.54 -0.63 16 21 S -0.38 -7.90 24.80 -56.49 -1.40 -9.30 16 22 C -0.05 -0.60 7.50 72.00 0.54 -0.06 16 23 C -0.11 -3.98 6.13 31.32 0.19 -3.79 16 24 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.03 1.64 7.55 -2.39 -0.02 1.62 16 26 H 0.04 1.93 8.05 -2.39 -0.02 1.91 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 2.04 8.04 -2.38 -0.02 2.02 16 29 H 0.41 8.29 8.30 -92.71 -0.77 7.52 16 30 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.13 1.02 7.90 -2.39 -0.02 1.00 16 32 H 0.10 2.00 7.72 -2.39 -0.02 1.98 16 33 H 0.12 1.75 7.95 -2.39 -0.02 1.73 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.13 0.92 8.12 -2.39 -0.02 0.90 16 37 H 0.07 2.51 7.12 -2.39 -0.02 2.49 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -66.56 320.73 2.17 -64.39 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.28 Total: 13.78 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 3.27 Total: -21.36 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.95 Total: -72.19 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.05 Total: -19.16 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.40 Total: -9.30 kcal Total: -66.56 2.17 -64.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601606128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.526 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds