Wall clock time and date at job start Mon Mar 30 2020 05:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47185 * 240.00608 * 3 2 1 5 5 H 1.48502 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47244 * 120.00399 * 3 2 1 7 7 C 1.37880 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50007 * 59.99960 * 9 7 2 11 11 C 1.53039 * 109.49530 * 299.93494 * 9 7 2 12 12 C 1.53049 * 109.53353 * 178.65349 * 11 9 7 13 13 C 1.53187 * 109.31497 * 61.36666 * 12 11 9 14 14 N 1.46931 * 108.77274 * 305.36469 * 13 12 11 15 15 C 1.34777 * 120.62462 * 233.62733 * 14 13 12 16 16 O 1.21289 * 119.99459 * 180.02562 * 15 14 13 17 17 C 1.50693 * 120.00575 * 0.02562 * 15 14 13 18 18 C 1.52997 * 109.47552 * 179.97438 * 17 15 14 19 19 C 1.53050 * 113.15251 * 275.55366 * 18 17 15 20 20 S 1.81503 * 89.85970 * 211.86464 * 19 18 17 21 21 C 1.53041 * 113.15555 * 175.11752 * 18 17 15 22 22 C 1.46925 * 118.74018 * 53.60848 * 14 13 12 23 23 H 0.96999 * 119.99883 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46238 * 298.67203 * 11 9 7 25 25 H 1.08993 * 109.46127 * 58.63700 * 11 9 7 26 26 H 1.09006 * 109.49335 * 181.31393 * 12 11 9 27 27 H 1.08993 * 109.49810 * 301.41219 * 12 11 9 28 28 H 1.09002 * 109.58909 * 65.14881 * 13 12 11 29 29 H 1.08993 * 109.58933 * 185.43112 * 13 12 11 30 30 H 1.08993 * 109.47310 * 300.00451 * 17 15 14 31 31 H 1.09005 * 109.46589 * 59.99939 * 17 15 14 32 32 H 1.09006 * 112.49090 * 45.33243 * 18 17 15 33 33 H 1.08994 * 113.14659 * 327.10832 * 19 18 17 34 34 H 1.08998 * 113.15054 * 96.58962 * 19 18 17 35 35 H 1.08992 * 113.15336 * 263.40863 * 21 18 17 36 36 H 1.09002 * 113.14641 * 32.85312 * 21 18 17 37 37 H 1.09005 * 109.58300 * 186.60199 * 22 14 13 38 38 H 1.08998 * 109.58651 * 66.18140 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6238 -2.5572 -0.8901 11 6 0.3727 -2.5818 1.2500 12 6 -0.4183 -3.8919 1.2341 13 6 0.5571 -5.0730 1.2495 14 7 1.4989 -4.9231 0.1317 15 6 1.6742 -5.9211 -0.7569 16 8 2.4549 -5.7853 -1.6751 17 6 0.9003 -7.2057 -0.6098 18 6 1.2823 -8.1637 -1.7399 19 6 0.4924 -7.9201 -3.0280 20 16 0.5818 -9.6917 -3.4125 21 6 0.6327 -9.5429 -1.6051 22 6 2.2455 -3.6644 0.0009 23 1 -0.4850 0.8400 0.0004 24 1 1.0025 -2.5487 2.1390 25 1 -0.3194 -1.7399 1.2639 26 1 -1.0611 -3.9395 2.1132 27 1 -1.0297 -3.9368 0.3329 28 1 1.1061 -5.0813 2.1912 29 1 0.0035 -6.0056 1.1412 30 1 1.1359 -7.6639 0.3507 31 1 -0.1679 -6.9940 -0.6589 32 1 2.3594 -8.2111 -1.9002 33 1 -0.5245 -7.5716 -2.8476 34 1 1.0257 -7.2978 -3.7465 35 1 1.2834 -10.2787 -1.1327 36 1 -0.3568 -9.5077 -1.1494 37 1 2.8061 -3.6676 -0.9340 38 1 2.9321 -3.5579 0.8407 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601666697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:23 Heat of formation + Delta-G solvation = -29.312637 kcal Electronic energy + Delta-G solvation = -18891.952820 eV Core-core repulsion = 16053.586347 eV Total energy + Delta-G solvation = -2838.366473 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85216 -37.41131 -36.24998 -33.55118 -31.42245 -30.57115 -28.79660 -26.40661 -25.11464 -24.42120 -21.77197 -21.11738 -19.69906 -18.37329 -16.95089 -16.58353 -16.24296 -15.83531 -15.26787 -14.62252 -14.59859 -13.69469 -13.49612 -13.39653 -13.11418 -12.94336 -12.79145 -12.67162 -12.17362 -12.02897 -11.81939 -11.42580 -10.99240 -10.89422 -10.84258 -10.79119 -10.39708 -10.17975 -9.98905 -9.84705 -9.51933 -9.30777 -8.87009 -8.41651 -7.94677 -7.92707 -6.05042 -4.12271 1.66251 1.80951 2.98847 3.29513 3.34073 3.36198 3.46382 4.16580 4.40138 4.54678 4.65403 4.98365 5.09488 5.12313 5.21931 5.24599 5.30748 5.43926 5.47142 5.58204 5.65922 5.73417 6.03275 6.06492 6.28354 6.35291 6.43573 6.61970 6.76014 6.92136 7.11989 7.28973 7.65417 7.87393 7.96987 8.03809 8.33874 8.59252 8.91184 9.52858 11.00443 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.004025 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.226634 B = 6954.550899 C = 7250.300476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.108 3.892 14 N -0.603 5.603 15 C 0.508 3.492 16 O -0.550 6.550 17 C -0.130 4.130 18 C -0.072 4.072 19 C -0.070 4.070 20 S -0.310 6.310 21 C -0.078 4.078 22 C 0.116 3.884 23 H 0.261 0.739 24 H 0.035 0.965 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -15.308 2.583 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.015 4.015 14 N -0.335 5.335 15 C 0.296 3.704 16 O -0.428 6.428 17 C -0.173 4.173 18 C -0.093 4.093 19 C -0.219 4.219 20 S -0.083 6.083 21 C -0.227 4.227 22 C -0.004 4.004 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.871 -16.083 0.979 16.221 hybrid contribution 0.210 1.697 0.939 1.951 sum -1.661 -14.386 1.918 14.608 Atomic orbital electron populations 1.69857 1.05904 1.26621 1.50408 1.24929 0.94855 0.99081 0.94880 0.86638 0.79600 0.82969 0.78697 1.20203 1.21300 1.20249 1.21044 0.92972 0.90312 1.51109 0.92533 1.18963 0.92953 0.91188 0.94762 0.95313 1.21633 0.99463 0.95390 0.98597 1.22007 0.97657 0.96729 1.00974 1.21750 0.91404 0.99029 0.89287 1.48322 1.42078 1.16144 1.26974 1.20398 0.83025 0.84990 0.82033 1.90673 1.37961 1.81611 1.32577 1.21725 1.01542 0.93991 1.00007 1.22313 1.02094 0.91697 0.93154 1.24438 1.03921 0.93564 0.99939 1.88961 1.97638 1.11670 1.10066 1.24397 1.04662 1.00029 0.93600 1.21999 0.95069 0.81895 1.01481 0.92903 0.94581 0.88646 0.92454 0.92381 0.91900 0.91100 0.88318 0.88550 0.86216 0.87888 0.87922 0.88495 0.87736 0.90275 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.72 8.56 -34.44 -0.29 -14.02 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.43 4.96 -26.69 -0.13 -2.56 16 12 C -0.14 -2.24 6.08 -26.61 -0.16 -2.40 16 13 C 0.11 1.51 6.34 -3.71 -0.02 1.49 16 14 N -0.60 -10.30 2.97 -172.77 -0.51 -10.81 16 15 C 0.51 8.17 7.70 -10.99 -0.08 8.09 16 16 O -0.55 -10.86 15.19 5.55 0.08 -10.78 16 17 C -0.13 -1.37 3.82 -27.89 -0.11 -1.48 16 18 C -0.07 -0.77 2.79 -90.57 -0.25 -1.02 16 19 C -0.07 -0.81 7.49 37.18 0.28 -0.53 16 20 S -0.31 -3.71 24.80 -107.50 -2.67 -6.37 16 21 C -0.08 -0.68 7.50 37.18 0.28 -0.41 16 22 C 0.12 2.43 5.66 -3.71 -0.02 2.40 16 23 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.10 2.36 6.04 -51.93 -0.31 2.04 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.73 5.94 -51.93 -0.31 0.42 16 30 H 0.10 0.81 7.94 -51.93 -0.41 0.39 16 31 H 0.10 0.88 7.45 -51.93 -0.39 0.49 16 32 H 0.12 1.47 7.72 -51.93 -0.40 1.07 16 33 H 0.10 1.05 7.94 -51.93 -0.41 0.64 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.74 8.12 -51.93 -0.42 0.31 16 37 H 0.08 1.78 7.01 -51.93 -0.36 1.42 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -29.71 312.94 -9.54 -39.25 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.94 Total: 0.17 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.82 Total: -8.06 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.11 Total: -34.73 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.67 Total: -6.37 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.71 -9.54 -39.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.936 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds