Wall clock time and date at job start Mon Mar 30 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99921 * 2 1 4 4 H 1.48501 * 109.47185 * 240.00608 * 3 2 1 5 5 H 1.48502 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47244 * 120.00399 * 3 2 1 7 7 C 1.37880 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99774 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50007 * 59.99960 * 9 7 2 11 11 C 1.53039 * 109.49530 * 299.93494 * 9 7 2 12 12 C 1.53049 * 109.53353 * 178.65349 * 11 9 7 13 13 C 1.53187 * 109.31497 * 61.36666 * 12 11 9 14 14 N 1.46931 * 108.77274 * 305.36469 * 13 12 11 15 15 C 1.34777 * 120.62462 * 233.62733 * 14 13 12 16 16 O 1.21289 * 119.99459 * 180.02562 * 15 14 13 17 17 C 1.50693 * 120.00575 * 0.02562 * 15 14 13 18 18 C 1.52997 * 109.47552 * 179.97438 * 17 15 14 19 19 C 1.53050 * 113.15251 * 275.55366 * 18 17 15 20 20 S 1.81503 * 89.85970 * 211.86464 * 19 18 17 21 21 C 1.53041 * 113.15555 * 175.11752 * 18 17 15 22 22 C 1.46925 * 118.74018 * 53.60848 * 14 13 12 23 23 H 0.96999 * 119.99883 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46238 * 298.67203 * 11 9 7 25 25 H 1.08993 * 109.46127 * 58.63700 * 11 9 7 26 26 H 1.09006 * 109.49335 * 181.31393 * 12 11 9 27 27 H 1.08993 * 109.49810 * 301.41219 * 12 11 9 28 28 H 1.09002 * 109.58909 * 65.14881 * 13 12 11 29 29 H 1.08993 * 109.58933 * 185.43112 * 13 12 11 30 30 H 1.08993 * 109.47310 * 300.00451 * 17 15 14 31 31 H 1.09005 * 109.46589 * 59.99939 * 17 15 14 32 32 H 1.09006 * 112.49090 * 45.33243 * 18 17 15 33 33 H 1.08994 * 113.14659 * 327.10832 * 19 18 17 34 34 H 1.08998 * 113.15054 * 96.58962 * 19 18 17 35 35 H 1.08992 * 113.15336 * 263.40863 * 21 18 17 36 36 H 1.09002 * 113.14641 * 32.85312 * 21 18 17 37 37 H 1.09005 * 109.58300 * 186.60199 * 22 14 13 38 38 H 1.08998 * 109.58651 * 66.18140 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6238 -2.5572 -0.8901 11 6 0.3727 -2.5818 1.2500 12 6 -0.4183 -3.8919 1.2341 13 6 0.5571 -5.0730 1.2495 14 7 1.4989 -4.9231 0.1317 15 6 1.6742 -5.9211 -0.7569 16 8 2.4549 -5.7853 -1.6751 17 6 0.9003 -7.2057 -0.6098 18 6 1.2823 -8.1637 -1.7399 19 6 0.4924 -7.9201 -3.0280 20 16 0.5818 -9.6917 -3.4125 21 6 0.6327 -9.5429 -1.6051 22 6 2.2455 -3.6644 0.0009 23 1 -0.4850 0.8400 0.0004 24 1 1.0025 -2.5487 2.1390 25 1 -0.3194 -1.7399 1.2639 26 1 -1.0611 -3.9395 2.1132 27 1 -1.0297 -3.9368 0.3329 28 1 1.1061 -5.0813 2.1912 29 1 0.0035 -6.0056 1.1412 30 1 1.1359 -7.6639 0.3507 31 1 -0.1679 -6.9940 -0.6589 32 1 2.3594 -8.2111 -1.9002 33 1 -0.5245 -7.5716 -2.8476 34 1 1.0257 -7.2978 -3.7465 35 1 1.2834 -10.2787 -1.1327 36 1 -0.3568 -9.5077 -1.1494 37 1 2.8061 -3.6676 -0.9340 38 1 2.9321 -3.5579 0.8407 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:22 Heat of formation + Delta-G solvation = -46.561722 kcal Electronic energy + Delta-G solvation = -18892.700796 eV Core-core repulsion = 16053.586347 eV Total energy + Delta-G solvation = -2839.114449 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13631 -38.68131 -37.40149 -35.34253 -33.05636 -32.10692 -29.93378 -27.19692 -26.95459 -25.85677 -23.32128 -22.24722 -21.04027 -19.72964 -18.54697 -17.84737 -17.51586 -16.87493 -16.72320 -16.28986 -15.82379 -15.08140 -14.91437 -14.64222 -14.39002 -14.10075 -13.92526 -13.82679 -13.60779 -13.51577 -12.85973 -12.80678 -12.63627 -12.59525 -12.28467 -11.90221 -11.81968 -11.67942 -11.56287 -11.23003 -11.05880 -10.82579 -10.58930 -10.40459 -9.41576 -8.85202 -8.10400 -6.25430 0.85994 0.97872 1.41338 1.42525 1.49861 1.76808 2.19468 2.44437 3.16104 3.30810 3.67428 3.74786 4.08359 4.13333 4.30425 4.32971 4.42628 4.46769 4.53457 4.59349 4.64474 4.66876 4.72748 4.83479 4.88881 4.93477 5.04133 5.16579 5.21128 5.34085 5.52032 5.62014 5.63340 5.95874 6.16725 6.36455 6.67271 6.84582 7.32915 7.42766 8.92705 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.004025 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.226634 B = 6954.550899 C = 7250.300476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.041 3.959 10 H -0.014 1.014 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.109 3.891 14 N -0.609 5.609 15 C 0.500 3.500 16 O -0.597 6.597 17 C -0.116 4.116 18 C -0.071 4.071 19 C -0.067 4.067 20 S -0.373 6.373 21 C -0.047 4.047 22 C 0.130 3.870 23 H 0.261 0.739 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.125 0.875 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.049 0.951 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -17.201 4.867 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.069 0.931 9 C 0.022 3.978 10 H 0.004 0.996 11 C -0.145 4.145 12 C -0.167 4.167 13 C -0.012 4.012 14 N -0.341 5.341 15 C 0.290 3.710 16 O -0.478 6.478 17 C -0.158 4.158 18 C -0.091 4.091 19 C -0.215 4.215 20 S -0.146 6.146 21 C -0.195 4.195 22 C 0.007 3.993 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.142 0.858 30 H 0.158 0.842 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.068 0.932 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.833 -18.001 3.283 18.515 hybrid contribution 0.521 2.321 0.185 2.386 sum -2.312 -15.680 3.468 16.224 Atomic orbital electron populations 1.69995 1.07019 1.27220 1.50884 1.25656 0.95677 1.02150 0.94600 0.85704 0.78493 0.79236 0.78785 1.20265 1.20762 1.19291 1.21450 0.93046 0.92147 1.51283 0.93147 1.18866 0.93191 0.91593 0.94148 0.99632 1.21426 0.98738 0.97399 0.96974 1.21922 0.97914 0.94949 1.01915 1.22021 0.90587 0.99887 0.88754 1.48399 1.42437 1.14833 1.28415 1.21483 0.82581 0.86298 0.80613 1.90663 1.40139 1.82648 1.34393 1.21785 1.01884 0.90388 1.01719 1.22201 1.00927 0.93265 0.92704 1.24518 1.04699 0.92341 0.99953 1.89253 1.97807 1.12734 1.14850 1.24417 1.06395 0.98527 0.90122 1.21482 0.94465 0.83266 1.00113 0.92961 0.94604 0.92237 0.89269 0.93549 0.90143 0.85793 0.84166 0.85701 0.88427 0.86160 0.90685 0.86665 0.84623 0.93200 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.75 11.32 21.45 0.24 -51.51 16 2 C 0.02 1.01 5.30 84.66 0.45 1.46 16 3 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -29.80 8.56 25.60 0.22 -29.58 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 9 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 10 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 11 C -0.11 -4.63 4.96 30.62 0.15 -4.48 16 12 C -0.13 -3.93 6.08 30.67 0.19 -3.75 16 13 C 0.11 2.55 6.34 86.36 0.55 3.10 16 14 N -0.61 -19.71 2.97 -818.91 -2.43 -22.15 16 15 C 0.50 15.17 7.70 87.65 0.67 15.84 16 16 O -0.60 -23.94 15.19 -3.06 -0.05 -23.99 16 17 C -0.12 -1.90 3.82 29.84 0.11 -1.79 16 18 C -0.07 -1.30 2.79 -10.76 -0.03 -1.33 16 19 C -0.07 -1.46 7.49 72.00 0.54 -0.92 16 20 S -0.37 -8.50 24.80 -56.49 -1.40 -9.90 16 21 C -0.05 -0.62 7.50 72.00 0.54 -0.08 16 22 C 0.13 5.51 5.66 86.36 0.49 6.00 16 23 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 3.00 6.04 -2.39 -0.01 2.99 16 26 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.12 1.66 5.94 -2.39 -0.01 1.65 16 30 H 0.14 1.27 7.94 -2.39 -0.02 1.25 16 31 H 0.13 1.47 7.45 -2.38 -0.02 1.45 16 32 H 0.10 2.29 7.72 -2.38 -0.02 2.27 16 33 H 0.12 2.17 7.94 -2.39 -0.02 2.15 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.14 1.06 8.12 -2.39 -0.02 1.04 16 37 H 0.05 2.37 7.01 -2.38 -0.02 2.35 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -70.88 312.94 3.28 -67.61 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.03 Total: 8.05 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 3.85 Total: -13.53 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -2.19 Total: -73.66 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.40 Total: -9.90 kcal Total: -70.88 3.28 -67.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.045 kcal (2) G-P(sol) polarization free energy of solvation -70.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds