Wall clock time and date at job start Mon Mar 30 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48496 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47414 * 300.00175 * 3 2 1 6 6 H 1.48506 * 109.47166 * 59.99996 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52608 * 299.92138 * 9 7 2 11 11 C 1.53046 * 109.49623 * 59.99951 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34780 * 120.63038 * 126.37031 * 14 13 12 16 16 O 1.21275 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99769 * 0.02562 * 15 14 13 18 18 C 1.52998 * 109.46827 * 179.97438 * 17 15 14 19 19 C 1.53043 * 113.15519 * 275.55168 * 18 17 15 20 20 S 1.81506 * 89.86413 * 211.86656 * 19 18 17 21 21 C 1.53041 * 113.15304 * 175.11756 * 18 17 15 22 22 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 23 23 H 0.97001 * 119.99878 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 25 25 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 26 26 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 27 27 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 28 28 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 29 29 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 30 30 H 1.08994 * 109.47487 * 300.00418 * 17 15 14 31 31 H 1.09000 * 109.46482 * 60.00935 * 17 15 14 32 32 H 1.09005 * 112.49490 * 45.33986 * 18 17 15 33 33 H 1.08998 * 113.14800 * 327.11171 * 19 18 17 34 34 H 1.08997 * 113.14766 * 96.59903 * 19 18 17 35 35 H 1.08995 * 113.15625 * 263.41360 * 21 18 17 36 36 H 1.09008 * 113.14564 * 32.85460 * 21 18 17 37 37 H 1.08996 * 109.58905 * 293.82203 * 22 14 13 38 38 H 1.09008 * 109.58585 * 173.39403 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5590 0.8884 11 6 0.3714 -2.5799 -1.2515 12 6 -0.4190 -3.8904 -1.2372 13 6 0.5570 -5.0710 -1.2557 14 7 1.4998 -4.9227 -0.1386 15 6 1.6765 -5.9222 0.7481 16 8 2.4574 -5.7873 1.6662 17 6 0.9038 -7.2074 0.5987 18 6 1.2882 -8.1675 1.7262 19 6 2.5514 -8.9766 1.4232 20 16 1.8894 -10.3637 2.3886 21 6 0.4646 -9.4574 1.7251 22 6 2.2459 -3.6640 -0.0063 23 1 -0.4850 0.8401 0.0004 24 1 -0.3211 -1.7383 -1.2632 25 1 1.0003 -2.5449 -2.1411 26 1 -1.0295 -3.9372 -0.3354 27 1 -1.0626 -3.9367 -2.1156 28 1 1.1050 -5.0774 -2.1979 29 1 0.0060 -6.0052 -1.1472 30 1 -0.1645 -6.9969 0.6486 31 1 1.1399 -7.6635 -0.3627 32 1 1.3161 -7.6778 2.6997 33 1 2.6681 -9.2084 0.3646 34 1 3.4523 -8.5431 1.8575 35 1 -0.3812 -9.4265 2.4119 36 1 0.1777 -9.7818 0.7247 37 1 2.9316 -3.5555 -0.8466 38 1 2.8075 -3.6685 0.9280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601666698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:26 Heat of formation + Delta-G solvation = -29.316874 kcal Electronic energy + Delta-G solvation = -18853.869709 eV Core-core repulsion = 16015.503052 eV Total energy + Delta-G solvation = -2838.366657 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.85514 -37.41997 -36.25590 -33.55330 -31.42161 -30.57271 -28.79964 -26.43170 -25.11755 -24.42077 -21.77723 -21.10713 -19.73474 -18.33639 -16.98230 -16.60431 -16.22073 -15.89961 -15.17293 -14.85568 -14.41137 -13.63675 -13.52525 -13.41746 -13.15003 -13.09902 -12.78476 -12.52373 -12.22577 -12.03005 -11.81971 -11.44101 -11.02661 -10.88295 -10.88075 -10.74611 -10.39918 -10.18091 -9.99329 -9.84735 -9.52002 -9.30792 -8.85373 -8.42390 -7.95200 -7.94444 -6.05366 -4.12409 1.64341 1.78250 2.98915 3.26660 3.34977 3.38348 3.46395 4.16378 4.39930 4.52966 4.64612 4.97658 5.08538 5.10456 5.21845 5.24362 5.30112 5.38081 5.49528 5.57318 5.63653 5.73290 6.03259 6.06656 6.28468 6.35341 6.43620 6.62030 6.76142 6.92199 7.12036 7.29054 7.65801 7.87389 7.96963 8.03987 8.33837 8.59267 8.91554 9.52856 11.00164 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040528 B = 0.003898 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.722010 B = 7181.866524 C = 7566.627034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.603 5.603 15 C 0.508 3.492 16 O -0.549 6.549 17 C -0.130 4.130 18 C -0.073 4.073 19 C -0.070 4.070 20 S -0.310 6.310 21 C -0.078 4.078 22 C 0.116 3.884 23 H 0.260 0.740 24 H 0.096 0.904 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 -15.459 -2.786 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.015 4.015 14 N -0.335 5.335 15 C 0.296 3.704 16 O -0.428 6.428 17 C -0.173 4.173 18 C -0.093 4.093 19 C -0.219 4.219 20 S -0.083 6.083 21 C -0.227 4.227 22 C -0.004 4.004 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.216 -16.437 -1.482 16.548 hybrid contribution 0.028 1.780 -0.820 1.959 sum -1.188 -14.657 -2.301 14.884 Atomic orbital electron populations 1.69877 1.05903 1.26392 1.50604 1.24937 0.94858 0.99112 0.94913 0.86525 0.80206 0.83653 0.77569 1.19716 1.21036 1.21009 1.21118 0.93043 0.90285 1.50814 0.92427 1.18977 0.92960 0.91225 0.94785 0.95280 1.21635 0.99479 0.95399 0.98581 1.22004 0.97651 0.96710 1.00994 1.21755 0.91383 0.99036 0.89284 1.48326 1.42037 1.16064 1.27112 1.20395 0.83070 0.84933 0.82038 1.90669 1.37905 1.81691 1.32540 1.21725 1.01857 0.94063 0.99608 1.22319 0.92031 0.93489 1.01454 1.24424 1.03070 0.92846 1.01526 1.88969 1.08914 1.43668 1.66747 1.24407 0.99324 0.95024 1.03919 1.21998 0.95079 0.81899 1.01466 0.93021 0.88623 0.94591 0.92351 0.92452 0.91930 0.91101 0.88107 0.88756 0.86114 0.88035 0.88007 0.88396 0.87747 0.92754 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 11.31 55.43 0.63 -23.91 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.67 8.56 -34.44 -0.29 -13.96 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.43 4.96 -26.68 -0.13 -2.57 16 12 C -0.14 -2.24 6.08 -26.61 -0.16 -2.40 16 13 C 0.11 1.51 6.34 -3.71 -0.02 1.49 16 14 N -0.60 -10.30 2.97 -172.77 -0.51 -10.81 16 15 C 0.51 8.17 7.70 -10.98 -0.08 8.09 16 16 O -0.55 -10.85 15.19 5.56 0.08 -10.77 16 17 C -0.13 -1.37 3.82 -27.88 -0.11 -1.48 16 18 C -0.07 -0.77 2.79 -90.58 -0.25 -1.03 16 19 C -0.07 -0.76 7.49 37.18 0.28 -0.48 16 20 S -0.31 -3.62 24.80 -107.50 -2.67 -6.28 16 21 C -0.08 -0.69 7.50 37.18 0.28 -0.41 16 22 C 0.12 2.42 5.66 -3.71 -0.02 2.40 16 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.10 2.36 6.04 -51.93 -0.31 2.05 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.73 5.93 -51.93 -0.31 0.42 16 30 H 0.10 0.91 7.69 -51.93 -0.40 0.51 16 31 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 32 H 0.12 1.53 7.72 -51.93 -0.40 1.13 16 33 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.72 8.12 -51.92 -0.42 0.30 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.78 7.01 -51.92 -0.36 1.42 16 LS Contribution 312.91 15.07 4.72 4.72 Total: -1.00 -29.75 312.91 -9.54 -39.29 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.94 Total: -0.03 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.82 Total: -8.00 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.11 Total: -34.72 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -2.67 Total: -6.28 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.75 -9.54 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.972 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds