Wall clock time and date at job start Mon Mar 30 2020 05:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48496 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47414 * 300.00175 * 3 2 1 6 6 H 1.48506 * 109.47166 * 59.99996 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52608 * 299.92138 * 9 7 2 11 11 C 1.53046 * 109.49623 * 59.99951 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34780 * 120.63038 * 126.37031 * 14 13 12 16 16 O 1.21275 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99769 * 0.02562 * 15 14 13 18 18 C 1.52998 * 109.46827 * 179.97438 * 17 15 14 19 19 C 1.53043 * 113.15519 * 275.55168 * 18 17 15 20 20 S 1.81506 * 89.86413 * 211.86656 * 19 18 17 21 21 C 1.53041 * 113.15304 * 175.11756 * 18 17 15 22 22 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 23 23 H 0.97001 * 119.99878 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 25 25 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 26 26 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 27 27 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 28 28 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 29 29 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 30 30 H 1.08994 * 109.47487 * 300.00418 * 17 15 14 31 31 H 1.09000 * 109.46482 * 60.00935 * 17 15 14 32 32 H 1.09005 * 112.49490 * 45.33986 * 18 17 15 33 33 H 1.08998 * 113.14800 * 327.11171 * 19 18 17 34 34 H 1.08997 * 113.14766 * 96.59903 * 19 18 17 35 35 H 1.08995 * 113.15625 * 263.41360 * 21 18 17 36 36 H 1.09008 * 113.14564 * 32.85460 * 21 18 17 37 37 H 1.08996 * 109.58905 * 293.82203 * 22 14 13 38 38 H 1.09008 * 109.58585 * 173.39403 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6247 -2.5590 0.8884 11 6 0.3714 -2.5799 -1.2515 12 6 -0.4190 -3.8904 -1.2372 13 6 0.5570 -5.0710 -1.2557 14 7 1.4998 -4.9227 -0.1386 15 6 1.6765 -5.9222 0.7481 16 8 2.4574 -5.7873 1.6662 17 6 0.9038 -7.2074 0.5987 18 6 1.2882 -8.1675 1.7262 19 6 2.5514 -8.9766 1.4232 20 16 1.8894 -10.3637 2.3886 21 6 0.4646 -9.4574 1.7251 22 6 2.2459 -3.6640 -0.0063 23 1 -0.4850 0.8401 0.0004 24 1 -0.3211 -1.7383 -1.2632 25 1 1.0003 -2.5449 -2.1411 26 1 -1.0295 -3.9372 -0.3354 27 1 -1.0626 -3.9367 -2.1156 28 1 1.1050 -5.0774 -2.1979 29 1 0.0060 -6.0052 -1.1472 30 1 -0.1645 -6.9969 0.6486 31 1 1.1399 -7.6635 -0.3627 32 1 1.3161 -7.6778 2.6997 33 1 2.6681 -9.2084 0.3646 34 1 3.4523 -8.5431 1.8575 35 1 -0.3812 -9.4265 2.4119 36 1 0.1777 -9.7818 0.7247 37 1 2.9316 -3.5555 -0.8466 38 1 2.8075 -3.6685 0.9280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:26 Heat of formation + Delta-G solvation = -46.602073 kcal Electronic energy + Delta-G solvation = -18854.619251 eV Core-core repulsion = 16015.503052 eV Total energy + Delta-G solvation = -2839.116199 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13742 -38.68273 -37.40006 -35.34429 -33.05518 -32.10682 -29.93127 -27.18768 -26.95760 -25.85514 -23.32437 -22.22708 -21.07750 -19.68997 -18.56157 -17.85155 -17.53038 -16.89528 -16.61774 -16.42206 -15.75751 -15.04705 -14.84781 -14.76426 -14.32354 -14.15122 -13.97922 -13.82475 -13.54412 -13.48520 -12.90098 -12.79885 -12.67383 -12.55160 -12.26835 -11.89730 -11.82259 -11.67733 -11.56887 -11.22749 -11.05262 -10.81464 -10.58915 -10.40753 -9.41576 -8.84353 -8.10643 -6.25503 0.88026 0.97367 1.39167 1.41925 1.52743 1.76864 2.19489 2.44340 3.15911 3.31454 3.67677 3.75140 4.08321 4.14001 4.31325 4.32373 4.42286 4.46828 4.53386 4.60227 4.65134 4.66284 4.72810 4.84047 4.89309 4.93608 5.04552 5.16260 5.21262 5.34362 5.52294 5.62237 5.63613 5.95984 6.16873 6.36581 6.67298 6.84896 7.32979 7.42797 8.92818 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040528 B = 0.003898 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.722010 B = 7181.866524 C = 7566.627034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.040 3.960 10 H -0.014 1.014 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.109 3.891 14 N -0.609 5.609 15 C 0.500 3.500 16 O -0.597 6.597 17 C -0.116 4.116 18 C -0.074 4.074 19 C -0.061 4.061 20 S -0.375 6.375 21 C -0.049 4.049 22 C 0.130 3.870 23 H 0.261 0.739 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.139 0.861 37 H 0.058 0.942 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 -17.176 -4.906 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.068 0.932 9 C 0.021 3.979 10 H 0.004 0.996 11 C -0.146 4.146 12 C -0.167 4.167 13 C -0.012 4.012 14 N -0.341 5.341 15 C 0.290 3.710 16 O -0.478 6.478 17 C -0.157 4.157 18 C -0.094 4.094 19 C -0.209 4.209 20 S -0.149 6.149 21 C -0.197 4.197 22 C 0.007 3.993 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.127 0.873 36 H 0.157 0.843 37 H 0.076 0.924 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.420 -18.176 -3.618 18.690 hybrid contribution 0.408 2.354 -0.114 2.392 sum -2.011 -15.822 -3.732 16.380 Atomic orbital electron populations 1.70009 1.07010 1.27083 1.51045 1.25663 0.95688 1.02177 0.94644 0.85586 0.79049 0.79829 0.77675 1.19416 1.20118 1.20926 1.21498 0.93031 0.92123 1.51018 0.93174 1.18879 0.93205 0.91624 0.94174 0.99595 1.21429 0.98752 0.97410 0.96966 1.21919 0.97916 0.94936 1.01927 1.22027 0.90555 0.99901 0.88757 1.48403 1.42396 1.14752 1.28548 1.21480 0.82621 0.86249 0.80619 1.90659 1.40078 1.82738 1.34351 1.21782 1.02263 0.90428 1.01259 1.22192 0.92704 0.94220 1.00332 1.24495 1.02236 0.91693 1.02437 1.89283 1.12749 1.44747 1.68076 1.24429 0.97628 0.91935 1.05668 1.21480 0.94469 0.83273 1.00100 0.92972 0.92210 0.94595 0.93538 0.89259 0.90154 0.85799 0.85236 0.84651 0.89096 0.85410 0.90372 0.87287 0.84323 0.92388 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.70 11.31 21.45 0.24 -51.46 16 2 C 0.02 0.95 5.30 84.65 0.45 1.40 16 3 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.54 -29.66 8.56 25.60 0.22 -29.44 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 9 C 0.04 1.99 2.25 -11.46 -0.03 1.97 16 10 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 11 C -0.11 -4.64 4.96 30.63 0.15 -4.49 16 12 C -0.13 -3.94 6.08 30.67 0.19 -3.75 16 13 C 0.11 2.55 6.34 86.36 0.55 3.10 16 14 N -0.61 -19.71 2.97 -818.91 -2.43 -22.14 16 15 C 0.50 15.17 7.70 87.66 0.67 15.84 16 16 O -0.60 -23.94 15.19 -3.01 -0.05 -23.98 16 17 C -0.12 -1.89 3.82 29.85 0.11 -1.78 16 18 C -0.07 -1.37 2.79 -10.77 -0.03 -1.40 16 19 C -0.06 -1.19 7.49 72.00 0.54 -0.65 16 20 S -0.37 -8.28 24.80 -56.49 -1.40 -9.69 16 21 C -0.05 -0.66 7.50 72.00 0.54 -0.12 16 22 C 0.13 5.51 5.66 86.36 0.49 6.00 16 23 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 24 H 0.06 3.02 6.04 -2.39 -0.01 3.00 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.12 1.66 5.93 -2.39 -0.01 1.65 16 30 H 0.13 1.51 7.69 -2.39 -0.02 1.49 16 31 H 0.14 1.24 7.69 -2.39 -0.02 1.22 16 32 H 0.09 2.28 7.72 -2.38 -0.02 2.26 16 33 H 0.13 1.82 7.94 -2.39 -0.02 1.81 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.14 1.03 8.12 -2.38 -0.02 1.01 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 2.37 7.01 -2.38 -0.02 2.35 16 Total: -1.00 -70.96 312.91 3.28 -67.68 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.03 Total: 7.46 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 3.85 Total: -13.33 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -2.19 Total: -73.60 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.40 Total: -9.69 kcal Total: -70.96 3.28 -67.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.080 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds