Wall clock time and date at job start Mon Mar 30 2020 04:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99866 * 2 1 4 4 C 1.50696 * 120.00325 * 180.02562 * 2 1 3 5 5 H 1.09008 * 109.47187 * 230.00042 * 4 2 1 6 6 C 1.52994 * 109.47558 * 109.99507 * 4 2 1 7 7 O 1.42901 * 109.47272 * 305.00206 * 6 4 2 8 8 S 1.81003 * 109.46836 * 349.99349 * 4 2 1 9 9 C 1.76202 * 100.00137 * 185.00139 * 8 4 2 10 10 N 1.32391 * 126.25911 * 0.03049 * 9 8 4 11 11 N 1.28507 * 110.20751 * 179.97438 * 10 9 8 12 12 C 1.33102 * 109.74317 * 359.97438 * 11 10 9 13 13 C 1.39784 * 126.56422 * 179.97438 * 12 11 10 14 14 H 1.07990 * 119.99937 * 186.21013 * 13 12 11 15 15 C 1.40079 * 119.99787 * 6.21173 * 13 12 11 16 16 N 1.30818 * 120.00007 * 6.44701 * 15 13 12 17 17 Si 1.86802 * 120.00049 * 186.44417 * 15 13 12 18 18 H 1.48499 * 109.47321 * 265.01629 * 17 15 13 19 19 H 1.48499 * 109.46774 * 25.01756 * 17 15 13 20 20 H 1.48500 * 109.47127 * 145.01048 * 17 15 13 21 21 N 1.36665 * 126.26238 * 180.29412 * 9 8 4 22 22 C 1.46502 * 127.15103 * 0.03828 * 21 9 8 23 23 H 1.07999 * 120.00326 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.00104 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47514 * 270.00272 * 3 2 1 26 26 H 1.08993 * 109.47222 * 30.00882 * 3 2 1 27 27 H 1.09008 * 109.46809 * 150.00376 * 3 2 1 28 28 H 1.09004 * 109.47316 * 65.00167 * 6 4 2 29 29 H 1.09003 * 109.47290 * 185.00252 * 6 4 2 30 30 H 0.96699 * 114.00175 * 180.02562 * 7 6 4 31 31 H 0.97004 * 120.00095 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.47327 * 270.17862 * 22 21 9 33 33 H 1.09003 * 109.47363 * 30.17355 * 22 21 9 34 34 H 1.08999 * 109.47241 * 150.17819 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 1 2.8173 -1.2897 0.7867 6 6 2.7457 -1.4995 -1.3561 7 8 1.7720 -1.4034 -2.3976 8 16 0.9098 -2.6679 0.2953 9 6 2.0438 -4.0129 0.3937 10 7 3.3599 -3.9380 0.2713 11 7 3.8845 -5.1045 0.3961 12 6 2.9292 -6.0067 0.6086 13 6 3.1076 -7.3808 0.7925 14 1 2.2492 -8.0328 0.8578 15 6 4.3999 -7.9121 0.8922 16 7 5.4340 -7.1124 0.9400 17 14 4.6465 -9.7627 0.9569 18 1 4.7398 -10.2005 2.3728 19 1 3.4962 -10.4384 0.3046 20 1 5.8994 -10.1203 0.2445 21 7 1.7253 -5.3250 0.6054 22 6 0.3874 -5.8914 0.7934 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 2.2451 1.6199 -1.0276 26 1 1.4745 2.0647 0.5139 27 1 3.0159 1.1747 0.5138 28 1 3.5038 -0.7288 -1.4953 29 1 3.2164 -2.4822 -1.3884 30 1 2.1345 -1.5174 -3.2868 31 1 6.3289 -7.4803 1.0094 32 1 0.1359 -5.8852 1.8540 33 1 -0.3405 -5.2944 0.2440 34 1 0.3712 -6.9161 0.4222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619460740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:28 Heat of formation + Delta-G solvation = 36.965159 kcal Electronic energy + Delta-G solvation = -18371.412859 eV Core-core repulsion = 15432.380064 eV Total energy + Delta-G solvation = -2939.032796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49764 -37.42182 -35.08228 -33.69013 -33.29148 -29.90348 -29.01066 -27.30881 -26.43973 -25.46282 -22.90224 -20.81911 -20.56426 -18.47006 -17.34008 -17.23946 -16.20334 -15.41333 -15.07600 -14.78438 -14.54159 -14.21391 -13.95165 -13.36236 -13.20049 -12.84754 -12.42674 -12.26493 -12.22422 -11.86661 -11.69327 -11.34607 -11.25733 -10.92579 -10.80720 -10.39689 -10.18695 -9.68272 -9.60948 -9.38926 -8.91324 -8.67358 -8.41316 -8.34113 -6.76583 -6.66228 -4.55188 2.05044 2.37592 2.85746 2.91620 3.06477 3.10417 3.37273 3.87688 4.25284 4.40952 4.52261 4.84366 5.17513 5.31634 5.33865 5.54495 5.57351 5.68818 5.71035 5.90747 5.93711 5.96566 6.04077 6.06040 6.25777 6.65925 6.79868 6.91524 6.94430 7.25204 7.50631 7.90645 7.92326 8.18937 8.71038 8.87185 10.27446 10.64064 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037046 B = 0.004951 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.644173 B = 5654.040431 C = 6011.810763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.098 4.098 3 C -0.111 4.111 4 C -0.026 4.026 5 H 0.113 0.887 6 C 0.084 3.916 7 O -0.563 6.563 8 S -0.027 6.027 9 C 0.043 3.957 10 N -0.292 5.292 11 N -0.337 5.337 12 C 0.347 3.653 13 C -0.450 4.450 14 H 0.083 0.917 15 C 0.081 3.919 16 N -0.740 5.740 17 Si 0.919 3.081 18 H -0.270 1.270 19 H -0.262 1.262 20 H -0.274 1.274 21 N -0.514 5.514 22 C 0.101 3.899 23 H 0.101 0.899 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.373 0.627 31 H 0.279 0.721 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 8.500 -2.300 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.099 4.099 3 C -0.170 4.170 4 C -0.155 4.155 5 H 0.131 0.869 6 C 0.004 3.996 7 O -0.367 6.367 8 S 0.202 5.798 9 C -0.328 4.328 10 N -0.138 5.138 11 N -0.184 5.184 12 C 0.102 3.898 13 C -0.490 4.490 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.364 5.364 17 Si 0.743 3.257 18 H -0.195 1.195 19 H -0.186 1.186 20 H -0.199 1.199 21 N -0.216 5.216 22 C -0.043 4.043 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.219 0.781 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.055 9.236 -1.865 11.771 hybrid contribution 0.586 -1.731 -0.262 1.846 sum -6.469 7.505 -2.127 10.134 Atomic orbital electron populations 1.23573 0.95190 1.01621 1.01957 1.21141 0.95070 0.93471 1.00233 1.20804 1.00161 0.93837 1.02154 1.22162 0.99871 0.93271 1.00222 0.86900 1.22256 0.89432 1.02009 0.85866 1.86493 1.37100 1.95950 1.17176 1.84442 1.08207 0.95048 1.92143 1.25741 0.97352 0.88510 1.21223 1.74403 1.01963 1.20478 1.16965 1.75388 1.21283 0.93090 1.28617 1.21607 0.78200 0.94950 0.95040 1.18085 0.93870 0.88294 1.48760 0.89842 1.25769 0.95135 1.00376 0.93169 1.69992 0.99438 1.36482 1.30479 0.86129 0.78912 0.81583 0.79055 1.19498 1.18585 1.19928 1.46054 1.07522 1.05452 1.62561 1.21491 0.82188 0.99518 1.01151 0.88096 0.87763 0.91346 0.91673 0.91753 0.93624 0.90224 0.78143 0.91017 0.92522 0.91543 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 13.44 29.02 0.39 -2.13 16 2 C -0.10 -1.38 4.84 -101.07 -0.49 -1.87 16 3 C -0.11 -1.23 9.94 36.01 0.36 -0.87 16 4 C -0.03 -0.44 2.44 -27.89 -0.07 -0.51 16 5 H 0.11 2.04 8.14 -51.91 -0.42 1.62 16 6 C 0.08 1.41 6.40 37.15 0.24 1.64 16 7 O -0.56 -8.76 12.89 -35.23 -0.45 -9.21 16 8 S -0.03 -0.52 18.54 -107.50 -1.99 -2.51 16 9 C 0.04 1.05 7.72 -87.28 -0.67 0.38 16 10 N -0.29 -7.91 9.79 30.89 0.30 -7.61 16 11 N -0.34 -10.08 10.56 31.26 0.33 -9.75 16 12 C 0.35 9.76 7.50 -154.81 -1.16 8.60 16 13 C -0.45 -12.00 9.05 -38.31 -0.35 -12.35 16 14 H 0.08 2.03 7.26 -52.49 -0.38 1.64 16 15 C 0.08 2.07 5.49 -17.29 -0.09 1.98 16 16 N -0.74 -20.35 12.00 55.56 0.67 -19.68 16 17 Si 0.92 18.58 29.57 -169.99 -5.03 13.56 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 N -0.51 -12.63 3.26 -123.17 -0.40 -13.03 16 22 C 0.10 1.91 10.89 59.85 0.65 2.56 16 23 H 0.10 1.12 8.04 -52.49 -0.42 0.70 16 24 H 0.10 1.55 5.84 -44.05 -0.26 1.29 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 27 H 0.06 0.69 8.12 -51.92 -0.42 0.26 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.63 5.83 -51.93 -0.30 1.33 16 30 H 0.37 4.22 9.12 45.56 0.42 4.63 16 31 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.11 7.85 -51.93 -0.41 0.71 16 34 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -33.36 304.10 -6.60 -39.95 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.41 Total: 6.27 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.20 Total: -2.57 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.90 Total: -50.07 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.45 Total: -9.21 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -1.99 Total: -2.51 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.36 -6.60 -39.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619460740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.920 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds