Wall clock time and date at job start Mon Mar 30 2020 04:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 119.99866 * 2 1 4 4 C 1.50696 * 120.00325 * 180.02562 * 2 1 3 5 5 H 1.09008 * 109.47187 * 230.00042 * 4 2 1 6 6 C 1.52994 * 109.47558 * 109.99507 * 4 2 1 7 7 O 1.42901 * 109.47272 * 305.00206 * 6 4 2 8 8 S 1.81003 * 109.46836 * 349.99349 * 4 2 1 9 9 C 1.76202 * 100.00137 * 185.00139 * 8 4 2 10 10 N 1.32391 * 126.25911 * 0.03049 * 9 8 4 11 11 N 1.28507 * 110.20751 * 179.97438 * 10 9 8 12 12 C 1.33102 * 109.74317 * 359.97438 * 11 10 9 13 13 C 1.39784 * 126.56422 * 179.97438 * 12 11 10 14 14 H 1.07990 * 119.99937 * 186.21013 * 13 12 11 15 15 C 1.40079 * 119.99787 * 6.21173 * 13 12 11 16 16 N 1.30818 * 120.00007 * 6.44701 * 15 13 12 17 17 Si 1.86802 * 120.00049 * 186.44417 * 15 13 12 18 18 H 1.48499 * 109.47321 * 265.01629 * 17 15 13 19 19 H 1.48499 * 109.46774 * 25.01756 * 17 15 13 20 20 H 1.48500 * 109.47127 * 145.01048 * 17 15 13 21 21 N 1.36665 * 126.26238 * 180.29412 * 9 8 4 22 22 C 1.46502 * 127.15103 * 0.03828 * 21 9 8 23 23 H 1.07999 * 120.00326 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.00104 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47514 * 270.00272 * 3 2 1 26 26 H 1.08993 * 109.47222 * 30.00882 * 3 2 1 27 27 H 1.09008 * 109.46809 * 150.00376 * 3 2 1 28 28 H 1.09004 * 109.47316 * 65.00167 * 6 4 2 29 29 H 1.09003 * 109.47290 * 185.00252 * 6 4 2 30 30 H 0.96699 * 114.00175 * 180.02562 * 7 6 4 31 31 H 0.97004 * 120.00095 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.47327 * 270.17862 * 22 21 9 33 33 H 1.09003 * 109.47363 * 30.17355 * 22 21 9 34 34 H 1.08999 * 109.47241 * 150.17819 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 1 2.8173 -1.2897 0.7867 6 6 2.7457 -1.4995 -1.3561 7 8 1.7720 -1.4034 -2.3976 8 16 0.9098 -2.6679 0.2953 9 6 2.0438 -4.0129 0.3937 10 7 3.3599 -3.9380 0.2713 11 7 3.8845 -5.1045 0.3961 12 6 2.9292 -6.0067 0.6086 13 6 3.1076 -7.3808 0.7925 14 1 2.2492 -8.0328 0.8578 15 6 4.3999 -7.9121 0.8922 16 7 5.4340 -7.1124 0.9400 17 14 4.6465 -9.7627 0.9569 18 1 4.7398 -10.2005 2.3728 19 1 3.4962 -10.4384 0.3046 20 1 5.8994 -10.1203 0.2445 21 7 1.7253 -5.3250 0.6054 22 6 0.3874 -5.8914 0.7934 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 2.2451 1.6199 -1.0276 26 1 1.4745 2.0647 0.5139 27 1 3.0159 1.1747 0.5138 28 1 3.5038 -0.7288 -1.4953 29 1 3.2164 -2.4822 -1.3884 30 1 2.1345 -1.5174 -3.2868 31 1 6.3289 -7.4803 1.0094 32 1 0.1359 -5.8852 1.8540 33 1 -0.3405 -5.2944 0.2440 34 1 0.3712 -6.9161 0.4222 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619460740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:28 Heat of formation + Delta-G solvation = 13.802867 kcal Electronic energy + Delta-G solvation = -18372.417252 eV Core-core repulsion = 15432.380064 eV Total energy + Delta-G solvation = -2940.037188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.44737 -38.65308 -36.23499 -35.62166 -35.13373 -31.55265 -30.61663 -28.31749 -28.11982 -27.36257 -24.20705 -22.76207 -22.44445 -19.69765 -19.23472 -18.51390 -17.81538 -17.19953 -16.58115 -16.35500 -16.04962 -15.86408 -15.15335 -15.07217 -14.40302 -13.95045 -13.91820 -13.84401 -13.59922 -13.28653 -12.99100 -12.92728 -12.75528 -12.63468 -12.02309 -11.95319 -11.84687 -11.46172 -11.37952 -10.84773 -10.56175 -10.34078 -10.21942 -9.97886 -8.57019 -8.49317 -6.56696 0.46551 1.19294 1.20700 1.33917 1.41305 1.57890 1.61753 2.18391 2.44289 2.51027 3.29960 3.33258 3.67476 3.98596 4.06265 4.18395 4.39938 4.42749 4.57721 4.58971 4.68617 4.80579 4.88586 4.89503 4.98194 5.06161 5.14668 5.32745 5.57443 5.60613 5.87956 6.04856 6.22113 6.75948 6.85140 6.92685 8.40688 8.64755 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037046 B = 0.004951 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.644173 B = 5654.040431 C = 6011.810763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.106 4.106 3 C -0.108 4.108 4 C -0.030 4.030 5 H 0.097 0.903 6 C 0.092 3.908 7 O -0.568 6.568 8 S 0.006 5.994 9 C 0.049 3.951 10 N -0.325 5.325 11 N -0.390 5.390 12 C 0.317 3.683 13 C -0.475 4.475 14 H 0.101 0.899 15 C 0.032 3.968 16 N -0.790 5.790 17 Si 1.006 2.994 18 H -0.260 1.260 19 H -0.249 1.249 20 H -0.271 1.271 21 N -0.522 5.522 22 C 0.094 3.906 23 H 0.133 0.867 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.391 0.609 31 H 0.284 0.716 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 8.920 -2.457 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.108 4.108 3 C -0.166 4.166 4 C -0.160 4.160 5 H 0.116 0.884 6 C 0.013 3.987 7 O -0.375 6.375 8 S 0.235 5.765 9 C -0.324 4.324 10 N -0.169 5.169 11 N -0.236 5.236 12 C 0.071 3.929 13 C -0.515 4.515 14 H 0.119 0.881 15 C -0.189 4.189 16 N -0.415 5.415 17 Si 0.824 3.176 18 H -0.185 1.185 19 H -0.172 1.172 20 H -0.196 1.196 21 N -0.223 5.223 22 C -0.049 4.049 23 H 0.151 0.849 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.240 0.760 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.835 9.664 -2.035 13.251 hybrid contribution 0.991 -1.677 -0.250 1.963 sum -7.845 7.987 -2.284 11.426 Atomic orbital electron populations 1.23732 0.94966 1.02301 1.01004 1.21250 0.95369 0.93012 1.01126 1.20841 1.00135 0.92470 1.03117 1.22318 0.99623 0.94087 0.99973 0.88447 1.22009 0.89953 1.00471 0.86295 1.86436 1.37121 1.95810 1.18176 1.84311 1.07073 0.93548 1.91604 1.26776 0.97833 0.90147 1.17632 1.74309 1.03543 1.19937 1.19159 1.75252 1.23369 0.94349 1.30665 1.22031 0.79312 0.95712 0.95889 1.18596 0.95261 0.88244 1.49419 0.88083 1.26947 0.94193 1.06013 0.91704 1.70131 1.00253 1.39361 1.31799 0.84857 0.79100 0.74125 0.79471 1.18461 1.17221 1.19553 1.46392 1.08643 1.05422 1.61879 1.21824 0.79976 1.00367 1.02719 0.84909 0.89323 0.90375 0.89433 0.91775 0.91217 0.94411 0.76013 0.90520 0.90870 0.89388 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.41 13.44 67.79 0.91 -3.50 16 2 C -0.11 -2.76 4.84 -16.48 -0.08 -2.84 16 3 C -0.11 -2.06 9.94 71.24 0.71 -1.35 16 4 C -0.03 -1.02 2.44 29.84 0.07 -0.95 16 5 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 6 C 0.09 3.08 6.40 71.98 0.46 3.54 16 7 O -0.57 -16.92 12.89 -148.98 -1.92 -18.84 16 8 S 0.01 0.23 18.54 -56.49 -1.05 -0.82 16 9 C 0.05 2.43 7.72 179.18 1.38 3.81 16 10 N -0.33 -18.37 9.79 -56.17 -0.55 -18.92 16 11 N -0.39 -24.50 10.56 -55.01 -0.58 -25.08 16 12 C 0.32 18.43 7.50 133.23 1.00 19.43 16 13 C -0.48 -25.78 9.05 23.09 0.21 -25.57 16 14 H 0.10 4.88 7.26 -2.92 -0.02 4.86 16 15 C 0.03 1.67 5.49 85.29 0.47 2.13 16 16 N -0.79 -45.06 12.00 21.85 0.26 -44.80 16 17 Si 1.01 38.08 29.57 68.60 2.03 40.10 16 18 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 19 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 21 N -0.52 -25.96 3.26 -543.61 -1.77 -27.73 16 22 C 0.09 3.43 10.89 127.77 1.39 4.82 16 23 H 0.13 2.38 8.04 -2.91 -0.02 2.36 16 24 H 0.09 2.42 5.84 -8.27 -0.05 2.37 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.30 8.06 -2.39 -0.02 1.28 16 27 H 0.06 1.23 8.12 -2.38 -0.02 1.21 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.60 5.83 -2.39 -0.01 1.59 16 30 H 0.39 8.32 9.12 -74.06 -0.68 7.65 16 31 H 0.28 14.61 8.30 -92.71 -0.77 13.84 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.09 2.80 7.85 -2.39 -0.02 2.78 16 34 H 0.09 3.03 7.48 -2.39 -0.02 3.01 16 Total: -1.00 -75.73 304.10 3.36 -72.37 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.42 Total: 24.18 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.52 Total: -0.46 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -2.64 Total: -116.53 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -1.92 Total: -18.84 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -1.05 Total: -0.82 kcal Total: -75.73 3.36 -72.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619460740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.171 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds