Wall clock time and date at job start Mon Mar 30 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36881 * 126.39914 * 2 1 4 4 Cl 1.73597 * 126.59944 * 0.02562 * 3 2 1 5 5 C 1.34794 * 106.80093 * 180.22432 * 3 2 1 6 6 N 1.34160 * 108.01612 * 359.78083 * 5 3 2 7 7 C 1.30476 * 109.27208 * 359.97438 * 6 5 3 8 8 C 1.50692 * 125.64184 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47180 * 83.04290 * 8 7 6 10 10 C 1.46902 * 111.00075 * 196.48750 * 9 8 7 11 11 C 1.50698 * 109.46977 * 161.32589 * 10 9 8 12 12 H 1.07995 * 120.00486 * 354.63281 * 11 10 9 13 13 C 1.37881 * 119.99848 * 174.63256 * 11 10 9 14 14 N 1.31518 * 119.99926 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00014 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47287 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.46939 * 120.00381 * 15 13 11 18 18 H 1.48504 * 109.46881 * 240.00083 * 15 13 11 19 19 C 1.46897 * 110.99919 * 72.53308 * 9 8 7 20 20 C 1.52998 * 117.50210 * 267.52978 * 19 9 8 21 21 C 1.52998 * 60.00350 * 252.51379 * 20 19 9 22 22 H 1.08999 * 109.47192 * 266.87780 * 1 2 3 23 23 H 1.08997 * 109.47464 * 26.88290 * 1 2 3 24 24 H 1.09005 * 109.47014 * 146.87967 * 1 2 3 25 25 H 1.08008 * 125.99048 * 179.81365 * 5 3 2 26 26 H 1.08998 * 109.47715 * 323.03539 * 8 7 6 27 27 H 1.09010 * 109.46903 * 203.03605 * 8 7 6 28 28 H 1.08999 * 109.47224 * 41.32319 * 10 9 8 29 29 H 1.09007 * 109.46752 * 281.32708 * 10 9 8 30 30 H 0.96997 * 120.00370 * 179.97438 * 14 13 11 31 31 H 1.09005 * 115.55510 * 53.24495 * 19 9 8 32 32 H 1.09009 * 117.49541 * 0.02562 * 20 19 9 33 33 H 1.08995 * 117.50602 * 145.01821 * 20 19 9 34 34 H 1.09003 * 117.49705 * 252.51011 * 21 20 19 35 35 H 1.09000 * 117.50223 * 107.48978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 17 1.7697 2.7619 0.0006 5 6 3.5471 0.6496 -0.0051 6 7 3.5101 -0.6914 -0.0032 7 6 2.2670 -1.0879 0.0034 8 6 1.8026 -2.5215 0.0069 9 7 1.8181 -3.0379 1.3821 10 6 1.7562 -4.5055 1.3941 11 6 2.2264 -5.0172 2.7313 12 1 2.6213 -4.3294 3.4642 13 6 2.1525 -6.3637 3.0189 14 7 1.6721 -7.2014 2.1261 15 14 2.7347 -6.9979 4.6767 16 1 3.2282 -5.8619 5.4958 17 1 1.6056 -7.6605 5.3774 18 1 3.8339 -7.9757 4.4743 19 6 0.7253 -2.4584 2.1744 20 6 1.0287 -1.1908 2.9758 21 6 0.8443 -2.5268 3.6983 22 1 -0.3633 -0.0560 1.0261 23 1 -0.3634 0.9166 -0.4647 24 1 -0.3633 -0.8607 -0.5615 25 1 4.4381 1.2600 -0.0093 26 1 2.4685 -3.1208 -0.6138 27 1 0.7888 -2.5759 -0.3901 28 1 2.3973 -4.9027 0.6071 29 1 0.7289 -4.8272 1.2227 30 1 1.6205 -8.1487 2.3283 31 1 -0.2709 -2.5548 1.7426 32 1 2.0393 -0.7867 2.9147 33 1 0.2323 -0.4528 3.0711 34 1 -0.0737 -2.6677 4.2690 35 1 1.7334 -3.0018 4.1129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687807447.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:45 Heat of formation + Delta-G solvation = 96.438842 kcal Electronic energy + Delta-G solvation = -18771.028821 eV Core-core repulsion = 15832.531291 eV Total energy + Delta-G solvation = -2938.497529 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.01156 -37.72104 -36.76109 -34.00592 -33.85726 -32.55256 -29.86303 -27.33395 -26.84637 -24.67730 -22.32917 -21.70387 -21.37200 -20.22486 -19.28277 -17.33565 -16.46213 -15.94876 -15.19675 -15.03483 -14.60048 -14.29656 -14.03485 -13.65293 -13.16766 -12.95732 -12.76246 -12.27952 -12.15756 -11.89982 -11.54521 -11.48896 -11.27843 -10.93515 -10.83631 -10.62458 -10.04818 -9.79545 -9.67343 -9.52173 -9.30031 -9.18843 -8.41890 -8.14917 -7.44007 -6.02159 -4.01722 1.64568 1.95235 2.97724 3.22104 3.31789 3.39841 3.44584 4.40149 4.46207 4.61291 4.67023 4.73339 5.03569 5.10995 5.29709 5.33735 5.48434 5.52590 5.65059 5.67243 5.95682 5.97840 6.07822 6.18527 6.28625 6.59875 6.63426 6.90390 7.08315 7.15983 7.27503 7.81221 8.02050 8.10179 8.22066 8.47694 9.04983 9.61455 11.08676 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.004763 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.155208 B = 5876.679168 C = 6012.940503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.448 5.448 3 C 0.000 4.000 4 Cl -0.023 7.023 5 C 0.007 3.993 6 N -0.467 5.467 7 C 0.262 3.738 8 C 0.139 3.861 9 N -0.499 5.499 10 C 0.197 3.803 11 C -0.496 4.496 12 H 0.068 0.932 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.023 3.977 20 C -0.184 4.184 21 C -0.145 4.145 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.175 0.825 26 H 0.104 0.896 27 H 0.041 0.959 28 H 0.030 0.970 29 H 0.000 1.000 30 H 0.260 0.740 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.329 16.198 -4.523 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.133 5.133 3 C -0.140 4.140 4 Cl 0.005 6.995 5 C -0.144 4.144 6 N -0.185 5.185 7 C -0.001 4.001 8 C 0.008 3.992 9 N -0.224 5.224 10 C 0.073 3.927 11 C -0.535 4.535 12 H 0.086 0.914 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.086 4.086 20 C -0.222 4.222 21 C -0.182 4.182 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.192 0.808 26 H 0.122 0.878 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.447 15.759 -4.347 16.707 hybrid contribution -1.389 0.133 0.518 1.488 sum -4.836 15.893 -3.828 17.047 Atomic orbital electron populations 1.22138 0.76708 1.04358 1.04340 1.45089 1.07560 1.05485 1.55181 1.21635 0.91354 0.81749 1.19291 1.98347 1.91887 1.11547 1.97705 1.22147 0.94139 0.91481 1.06661 1.70484 1.18562 1.09848 1.19633 1.23333 0.85078 0.90131 1.01601 1.20417 0.99196 0.85992 0.93549 1.61831 1.42241 1.10956 1.07410 1.19779 0.96052 0.78317 0.98509 1.21222 1.40252 0.92083 0.99905 0.91353 1.24960 0.95636 0.96906 0.97113 1.69957 1.46671 1.03126 1.34365 0.86485 0.78301 0.78920 0.84008 1.19635 1.21233 1.21076 1.22127 0.92564 1.00052 0.93888 1.22985 1.01714 0.90965 1.06537 1.23002 1.03660 0.97921 0.93637 0.89833 0.89841 0.89228 0.80829 0.87777 0.94096 0.95188 0.98234 0.93054 0.91387 0.89198 0.90601 0.89938 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.55 59.85 0.63 1.32 16 2 N -0.45 -6.17 3.08 -117.77 -0.36 -6.53 16 3 C 0.00 0.00 7.49 -16.52 -0.12 -0.13 16 4 Cl -0.02 -0.25 28.87 -51.86 -1.50 -1.75 16 5 C 0.01 0.10 11.86 -17.76 -0.21 -0.11 16 6 N -0.47 -8.42 11.25 -10.76 -0.12 -8.54 16 7 C 0.26 4.34 6.46 -155.33 -1.00 3.34 16 8 C 0.14 2.41 5.37 -4.98 -0.03 2.38 16 9 N -0.50 -10.28 4.51 -229.51 -1.03 -11.31 16 10 C 0.20 4.88 4.76 -4.98 -0.02 4.85 16 11 C -0.50 -13.37 8.11 -34.44 -0.28 -13.65 16 12 H 0.07 1.85 5.63 -52.49 -0.30 1.55 16 13 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 15 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.02 0.42 4.24 -67.71 -0.29 0.13 16 20 C -0.18 -3.01 8.88 -26.73 -0.24 -3.25 16 21 C -0.15 -2.67 9.43 -26.73 -0.25 -2.92 16 22 H 0.08 0.85 6.55 -51.93 -0.34 0.51 16 23 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 24 H 0.09 0.83 7.07 -51.93 -0.37 0.47 16 25 H 0.17 2.15 8.06 -52.48 -0.42 1.72 16 26 H 0.10 1.86 7.68 -51.93 -0.40 1.46 16 27 H 0.04 0.62 6.85 -51.92 -0.36 0.27 16 28 H 0.03 0.79 7.66 -51.93 -0.40 0.39 16 29 H 0.00 -0.01 8.01 -51.92 -0.42 -0.42 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.08 1.06 7.53 -51.93 -0.39 0.67 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.11 2.40 5.80 -51.93 -0.30 2.10 16 LS Contribution 305.86 15.07 4.61 4.61 Total: -1.00 -30.06 305.86 -9.10 -39.16 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.50 Total: -0.02 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.91 Total: -6.62 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.78 Total: -51.74 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.50 Total: -1.75 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.06 -9.10 -39.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687807447.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.594 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds