Wall clock time and date at job start Mon Mar 30 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36881 * 126.39914 * 2 1 4 4 Cl 1.73597 * 126.59944 * 0.02562 * 3 2 1 5 5 C 1.34794 * 106.80093 * 180.22432 * 3 2 1 6 6 N 1.34160 * 108.01612 * 359.78083 * 5 3 2 7 7 C 1.30476 * 109.27208 * 359.97438 * 6 5 3 8 8 C 1.50692 * 125.64184 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47180 * 83.04290 * 8 7 6 10 10 C 1.46902 * 111.00075 * 196.48750 * 9 8 7 11 11 C 1.50698 * 109.46977 * 161.32589 * 10 9 8 12 12 H 1.07995 * 120.00486 * 354.63281 * 11 10 9 13 13 C 1.37881 * 119.99848 * 174.63256 * 11 10 9 14 14 N 1.31518 * 119.99926 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00014 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47287 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.46939 * 120.00381 * 15 13 11 18 18 H 1.48504 * 109.46881 * 240.00083 * 15 13 11 19 19 C 1.46897 * 110.99919 * 72.53308 * 9 8 7 20 20 C 1.52998 * 117.50210 * 267.52978 * 19 9 8 21 21 C 1.52998 * 60.00350 * 252.51379 * 20 19 9 22 22 H 1.08999 * 109.47192 * 266.87780 * 1 2 3 23 23 H 1.08997 * 109.47464 * 26.88290 * 1 2 3 24 24 H 1.09005 * 109.47014 * 146.87967 * 1 2 3 25 25 H 1.08008 * 125.99048 * 179.81365 * 5 3 2 26 26 H 1.08998 * 109.47715 * 323.03539 * 8 7 6 27 27 H 1.09010 * 109.46903 * 203.03605 * 8 7 6 28 28 H 1.08999 * 109.47224 * 41.32319 * 10 9 8 29 29 H 1.09007 * 109.46752 * 281.32708 * 10 9 8 30 30 H 0.96997 * 120.00370 * 179.97438 * 14 13 11 31 31 H 1.09005 * 115.55510 * 53.24495 * 19 9 8 32 32 H 1.09009 * 117.49541 * 0.02562 * 20 19 9 33 33 H 1.08995 * 117.50602 * 145.01821 * 20 19 9 34 34 H 1.09003 * 117.49705 * 252.51011 * 21 20 19 35 35 H 1.09000 * 117.50223 * 107.48978 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 17 1.7697 2.7619 0.0006 5 6 3.5471 0.6496 -0.0051 6 7 3.5101 -0.6914 -0.0032 7 6 2.2670 -1.0879 0.0034 8 6 1.8026 -2.5215 0.0069 9 7 1.8181 -3.0379 1.3821 10 6 1.7562 -4.5055 1.3941 11 6 2.2264 -5.0172 2.7313 12 1 2.6213 -4.3294 3.4642 13 6 2.1525 -6.3637 3.0189 14 7 1.6721 -7.2014 2.1261 15 14 2.7347 -6.9979 4.6767 16 1 3.2282 -5.8619 5.4958 17 1 1.6056 -7.6605 5.3774 18 1 3.8339 -7.9757 4.4743 19 6 0.7253 -2.4584 2.1744 20 6 1.0287 -1.1908 2.9758 21 6 0.8443 -2.5268 3.6983 22 1 -0.3633 -0.0560 1.0261 23 1 -0.3634 0.9166 -0.4647 24 1 -0.3633 -0.8607 -0.5615 25 1 4.4381 1.2600 -0.0093 26 1 2.4685 -3.1208 -0.6138 27 1 0.7888 -2.5759 -0.3901 28 1 2.3973 -4.9027 0.6071 29 1 0.7289 -4.8272 1.2227 30 1 1.6205 -8.1487 2.3283 31 1 -0.2709 -2.5548 1.7426 32 1 2.0393 -0.7867 2.9147 33 1 0.2323 -0.4528 3.0711 34 1 -0.0737 -2.6677 4.2690 35 1 1.7334 -3.0018 4.1129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687807447.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:45 Heat of formation + Delta-G solvation = 78.000958 kcal Electronic energy + Delta-G solvation = -18771.828347 eV Core-core repulsion = 15832.531291 eV Total energy + Delta-G solvation = -2939.297056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.15332 -39.23733 -37.74216 -35.49345 -35.04840 -34.48182 -31.31739 -28.89272 -27.97933 -26.18672 -24.17668 -23.10954 -22.52813 -21.59552 -20.63841 -18.72730 -18.10368 -17.11368 -16.75794 -16.43023 -16.30216 -15.62903 -15.33167 -15.07952 -14.53145 -14.03599 -14.00003 -13.76526 -13.56349 -13.23195 -13.12728 -12.79724 -12.68994 -12.53473 -12.44411 -12.37332 -11.83519 -11.27129 -11.13028 -10.96389 -10.78933 -10.61736 -10.51890 -9.29855 -9.06317 -8.13595 -6.19876 0.58798 0.82691 1.41594 1.44058 1.55780 1.95341 2.03047 2.44704 2.99446 3.19272 3.25296 3.41513 3.82283 3.92053 4.12075 4.17795 4.24508 4.35560 4.45504 4.51995 4.58556 4.62488 4.78545 4.84301 5.09854 5.11927 5.19379 5.33245 5.42325 5.55080 5.78123 5.98949 6.11703 6.38787 6.58573 6.94410 7.04980 7.47723 8.96992 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.004763 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.155208 B = 5876.679168 C = 6012.940503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.440 5.440 3 C 0.011 3.989 4 Cl 0.007 6.993 5 C -0.014 4.014 6 N -0.507 5.507 7 C 0.245 3.755 8 C 0.142 3.858 9 N -0.513 5.513 10 C 0.214 3.786 11 C -0.503 4.503 12 H 0.064 0.936 13 C 0.005 3.995 14 N -0.935 5.935 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.283 1.283 19 C 0.012 3.988 20 C -0.148 4.148 21 C -0.161 4.161 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.192 0.808 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.004 0.996 29 H -0.021 1.021 30 H 0.262 0.738 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 18.262 -3.946 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.124 5.124 3 C -0.130 4.130 4 Cl 0.035 6.965 5 C -0.164 4.164 6 N -0.226 5.226 7 C -0.018 4.018 8 C 0.013 3.987 9 N -0.238 5.238 10 C 0.089 3.911 11 C -0.542 4.542 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.576 5.576 15 Si 0.783 3.217 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.209 1.209 19 C -0.097 4.097 20 C -0.185 4.185 21 C -0.198 4.198 22 H 0.109 0.891 23 H 0.124 0.876 24 H 0.118 0.882 25 H 0.209 0.791 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.022 0.978 29 H -0.003 1.003 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.656 17.851 -3.771 18.830 hybrid contribution -1.032 -0.366 0.293 1.133 sum -5.688 17.485 -3.478 18.713 Atomic orbital electron populations 1.22461 0.74490 1.06148 1.05288 1.45179 1.08786 1.04637 1.53831 1.21755 0.91073 0.82976 1.17212 1.98363 1.91575 1.09025 1.97510 1.22502 0.95704 0.90713 1.07485 1.70381 1.19888 1.11783 1.20544 1.22856 0.85344 0.90140 1.03462 1.20301 1.00211 0.86587 0.91633 1.61654 1.43986 1.08424 1.09774 1.19378 0.93902 0.81211 0.96637 1.21501 1.39733 0.92279 1.00643 0.91815 1.25738 0.95830 0.97215 1.00462 1.70067 1.47947 1.03411 1.36220 0.85504 0.77882 0.78267 0.80008 1.19107 1.20473 1.20938 1.22247 0.92589 1.01404 0.93427 1.22867 1.01643 0.90405 1.03594 1.22968 1.03210 0.99666 0.93993 0.89118 0.87554 0.88207 0.79091 0.89350 0.91723 0.97780 1.00314 0.92945 0.89690 0.91303 0.87006 0.87984 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 10.55 127.77 1.35 2.33 16 2 N -0.44 -11.15 3.08 -526.52 -1.62 -12.77 16 3 C 0.01 0.28 7.49 83.11 0.62 0.90 16 4 Cl 0.01 0.13 28.87 -2.72 -0.08 0.06 16 5 C -0.01 -0.40 11.86 83.55 0.99 0.59 16 6 N -0.51 -18.23 11.25 -187.95 -2.11 -20.35 16 7 C 0.25 7.97 6.46 138.10 0.89 8.87 16 8 C 0.14 4.97 5.37 85.55 0.46 5.43 16 9 N -0.51 -21.37 4.51 -880.05 -3.97 -25.34 16 10 C 0.21 10.92 4.76 85.56 0.41 11.33 16 11 C -0.50 -27.72 8.11 25.60 0.21 -27.52 16 12 H 0.06 3.52 5.63 -2.91 -0.02 3.51 16 13 C 0.01 0.28 5.46 84.65 0.46 0.74 16 14 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 15 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 C 0.01 0.43 4.24 44.92 0.19 0.62 16 20 C -0.15 -4.49 8.88 30.59 0.27 -4.22 16 21 C -0.16 -5.77 9.43 30.60 0.29 -5.48 16 22 H 0.09 1.47 6.55 -2.39 -0.02 1.46 16 23 H 0.11 1.36 7.83 -2.39 -0.02 1.34 16 24 H 0.10 1.54 7.07 -2.38 -0.02 1.52 16 25 H 0.19 4.51 8.06 -2.91 -0.02 4.49 16 26 H 0.09 3.30 7.68 -2.39 -0.02 3.29 16 27 H 0.06 1.91 6.85 -2.38 -0.02 1.90 16 28 H 0.00 0.23 7.66 -2.39 -0.02 0.21 16 29 H -0.02 -1.13 8.01 -2.38 -0.02 -1.15 16 30 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 32 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.11 2.63 7.53 -2.39 -0.02 2.61 16 34 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.08 3.46 5.80 -2.39 -0.01 3.45 16 Total: -1.00 -65.76 305.86 1.77 -63.99 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.10 Total: 9.38 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 6.14 Total: -6.40 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -7.42 Total: -113.33 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -0.08 Total: 0.06 kcal Total: -65.76 1.77 -63.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687807447.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.988 kcal (2) G-P(sol) polarization free energy of solvation -65.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds