Wall clock time and date at job start Mon Mar 30 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48502 * 109.46809 * 239.99353 * 3 2 1 5 5 H 1.48493 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46961 * 119.99980 * 3 2 1 7 7 C 1.39582 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.36126 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00035 * 179.97438 * 9 7 2 11 11 O 1.21499 * 119.99789 * 0.02562 * 10 9 7 12 12 C 1.48826 * 119.99889 * 179.97438 * 10 9 7 13 13 O 1.21441 * 120.00137 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99889 * 179.97438 * 12 10 9 15 15 C 1.47016 * 125.64848 * 0.04469 * 14 12 10 16 16 C 1.54329 * 107.27152 * 181.02159 * 15 14 12 17 17 C 1.55156 * 102.94322 * 22.19534 * 16 15 14 18 18 H 1.08998 * 111.04111 * 82.58055 * 17 16 15 19 19 C 1.52999 * 111.00593 * 206.42388 * 17 16 15 20 20 C 1.50698 * 109.47004 * 178.64488 * 19 17 16 21 21 N 1.34777 * 119.99538 * 179.97438 * 20 19 17 22 22 O 1.21283 * 120.00472 * 0.02562 * 20 19 17 23 23 C 1.47423 * 125.64824 * 180.02562 * 14 12 10 24 24 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 25 25 H 0.96994 * 119.99847 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.88487 * 300.43515 * 15 14 12 27 27 H 1.08998 * 109.88594 * 61.45161 * 15 14 12 28 28 H 1.09000 * 110.71944 * 263.82840 * 16 15 14 29 29 H 1.09009 * 110.71823 * 140.55753 * 16 15 14 30 30 H 1.09003 * 109.46690 * 58.64837 * 19 17 16 31 31 H 1.08993 * 109.46773 * 298.65173 * 19 17 16 32 32 H 0.97001 * 120.00485 * 0.02562 * 21 20 19 33 33 H 0.97005 * 119.99790 * 179.72635 * 21 20 19 34 34 H 1.09000 * 110.36774 * 37.06263 * 23 14 12 35 35 H 1.09007 * 110.36592 * 274.74673 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0980 1.6964 -1.2125 5 1 1.2791 2.7464 -0.0006 6 1 3.0979 1.6965 1.2126 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3275 -2.3877 0.0005 10 6 2.0014 -3.5549 0.0005 11 8 3.2164 -3.5548 0.0010 12 6 1.2573 -4.8438 0.0011 13 8 0.0429 -4.8438 0.0011 14 7 1.9312 -6.0110 0.0006 15 6 3.3942 -6.1556 0.0004 16 6 3.7052 -7.6670 -0.0265 17 6 2.4048 -8.2790 -0.6111 18 1 2.3991 -8.2196 -1.6994 19 6 2.2198 -9.7238 -0.1427 20 6 0.9326 -10.2724 -0.7024 21 7 0.5601 -11.5367 -0.4208 22 8 0.2324 -9.5765 -1.4070 23 6 1.3233 -7.3540 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 0.3576 -2.3877 -0.0002 26 1 3.8142 -5.6751 -0.8832 27 1 3.8115 -5.7050 0.9009 28 1 3.8886 -8.0410 0.9808 29 1 4.5552 -7.8743 -0.6767 30 1 2.1831 -9.7507 0.9464 31 1 3.0557 -10.3291 -0.4931 32 1 1.1203 -12.0933 0.1424 33 1 -0.2704 -11.8885 -0.7778 34 1 0.4238 -7.3633 -0.6150 35 1 1.0902 -7.6650 1.0190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690741846.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:57 Heat of formation + Delta-G solvation = -112.279997 kcal Electronic energy + Delta-G solvation = -20397.031636 eV Core-core repulsion = 17008.774213 eV Total energy + Delta-G solvation = -3388.257422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.17792 -39.34552 -37.68767 -36.64088 -34.24034 -33.91384 -32.62357 -31.31994 -29.55693 -27.43337 -25.66748 -23.73205 -21.59610 -21.22617 -20.06026 -18.84299 -18.08140 -17.64984 -16.91576 -16.44294 -15.97506 -15.74380 -15.33676 -14.78181 -14.33959 -13.95427 -13.92440 -13.39847 -13.28395 -13.01078 -12.51081 -12.35369 -12.12559 -11.76453 -11.72803 -11.25962 -11.14053 -10.94123 -10.64254 -10.52426 -10.36568 -10.19412 -10.04283 -9.93054 -9.65140 -8.22974 -8.13489 -8.10954 -6.61090 -3.93705 2.44587 2.53791 3.17373 3.20382 3.20896 3.25268 3.38194 4.08846 4.32549 4.41008 4.54344 4.70706 4.85191 5.01870 5.22260 5.25317 5.31105 5.34171 5.53145 5.67721 5.81217 6.03414 6.15923 6.24565 6.30711 6.36212 6.51617 6.77265 7.05250 7.36077 7.79513 7.92500 8.04828 8.36703 8.67171 9.01888 9.38544 9.91390 10.54000 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045695 B = 0.003752 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.616615 B = 7460.619720 C = 7963.796129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.030 3.970 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.501 5.501 10 C 0.400 3.600 11 O -0.592 6.592 12 C 0.526 3.474 13 O -0.545 6.545 14 N -0.603 5.603 15 C 0.118 3.882 16 C -0.132 4.132 17 C -0.088 4.088 18 H 0.093 0.907 19 C -0.130 4.130 20 C 0.511 3.489 21 N -0.861 5.861 22 O -0.532 6.532 23 C 0.113 3.887 24 H 0.280 0.720 25 H 0.404 0.596 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.400 0.600 33 H 0.400 0.600 34 H 0.089 0.911 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.356 -20.659 1.468 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.129 0.871 9 N -0.136 5.136 10 C 0.184 3.816 11 O -0.480 6.480 12 C 0.313 3.687 13 O -0.422 6.422 14 N -0.339 5.339 15 C -0.005 4.005 16 C -0.170 4.170 17 C -0.108 4.108 18 H 0.111 0.889 19 C -0.170 4.170 20 C 0.296 3.704 21 N -0.425 5.425 22 O -0.407 6.407 23 C -0.010 4.010 24 H 0.091 0.909 25 H 0.240 0.760 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.228 0.772 33 H 0.230 0.770 34 H 0.107 0.893 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.960 -19.792 1.031 20.430 hybrid contribution -0.292 0.211 0.204 0.414 sum 4.669 -19.580 1.235 20.167 Atomic orbital electron populations 1.69483 1.06502 1.29365 1.45515 1.25577 0.95616 1.00412 0.96029 0.85785 0.78847 0.79421 0.79441 1.19420 1.20638 1.19427 1.19811 0.93885 0.81875 1.48066 0.87064 1.41538 1.10469 1.04123 1.57444 1.18874 0.87818 0.84085 0.90845 1.90553 1.12792 1.86439 1.58222 1.20481 0.87060 0.84709 0.76463 1.90697 1.13950 1.87460 1.50136 1.48128 1.07758 1.04806 1.73197 1.21992 0.80347 0.94296 1.03874 1.22846 0.97134 0.95478 1.01512 1.22125 0.95364 0.91732 1.01584 0.88873 1.21649 0.95625 0.97177 1.02588 1.20806 0.87859 0.81520 0.80194 1.43928 1.27811 1.15033 1.55741 1.90808 1.54765 1.57846 1.37284 1.22258 0.97263 0.81213 1.00232 0.90925 0.76022 0.90464 0.90557 0.90681 0.89980 0.88374 0.88209 0.77215 0.76967 0.89294 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 13.03 55.53 0.72 -23.25 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.49 29.56 -169.99 -5.02 15.46 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.31 -8.62 9.67 -15.14 -0.15 -8.76 16 8 H 0.11 3.17 7.15 -52.49 -0.38 2.79 16 9 N -0.50 -13.93 5.25 -11.59 -0.06 -13.99 16 10 C 0.40 10.51 7.78 -11.88 -0.09 10.42 16 11 O -0.59 -15.93 13.66 5.37 0.07 -15.86 16 12 C 0.53 12.57 7.89 -11.88 -0.09 12.48 16 13 O -0.55 -14.13 16.72 5.42 0.09 -14.04 16 14 N -0.60 -11.67 3.33 -171.27 -0.57 -12.24 16 15 C 0.12 1.91 5.49 -3.06 -0.02 1.89 16 16 C -0.13 -1.39 6.42 -24.89 -0.16 -1.55 16 17 C -0.09 -1.01 2.62 -88.48 -0.23 -1.25 16 18 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 19 C -0.13 -0.97 5.22 -27.88 -0.15 -1.11 16 20 C 0.51 4.99 7.89 -10.99 -0.09 4.91 16 21 N -0.86 -4.81 8.87 31.22 0.28 -4.54 16 22 O -0.53 -8.03 15.41 5.55 0.09 -7.95 16 23 C 0.11 1.80 5.67 -2.54 -0.01 1.79 16 24 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 25 H 0.40 11.40 7.35 -40.82 -0.30 11.10 16 26 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 27 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 28 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 29 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.10 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.40 0.86 8.83 -40.82 -0.36 0.50 16 33 H 0.40 2.10 8.93 -40.82 -0.36 1.73 16 34 H 0.09 1.66 7.00 -51.93 -0.36 1.30 16 35 H 0.06 0.86 8.00 -51.93 -0.42 0.44 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -35.49 302.64 -5.14 -40.62 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.21 Total: 11.72 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: -1.08 Total: 19.50 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.37 Total: -54.02 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: 0.25 Total: -37.84 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.49 -5.14 -40.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690741846.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.659 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds