Wall clock time and date at job start Mon Mar 30 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86806 * 119.99832 * 2 1 4 4 H 1.48502 * 109.46809 * 239.99353 * 3 2 1 5 5 H 1.48493 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46961 * 119.99980 * 3 2 1 7 7 C 1.39582 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00340 * 180.02562 * 7 2 1 9 9 N 1.36126 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00035 * 179.97438 * 9 7 2 11 11 O 1.21499 * 119.99789 * 0.02562 * 10 9 7 12 12 C 1.48826 * 119.99889 * 179.97438 * 10 9 7 13 13 O 1.21441 * 120.00137 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99889 * 179.97438 * 12 10 9 15 15 C 1.47016 * 125.64848 * 0.04469 * 14 12 10 16 16 C 1.54329 * 107.27152 * 181.02159 * 15 14 12 17 17 C 1.55156 * 102.94322 * 22.19534 * 16 15 14 18 18 H 1.08998 * 111.04111 * 82.58055 * 17 16 15 19 19 C 1.52999 * 111.00593 * 206.42388 * 17 16 15 20 20 C 1.50698 * 109.47004 * 178.64488 * 19 17 16 21 21 N 1.34777 * 119.99538 * 179.97438 * 20 19 17 22 22 O 1.21283 * 120.00472 * 0.02562 * 20 19 17 23 23 C 1.47423 * 125.64824 * 180.02562 * 14 12 10 24 24 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 25 25 H 0.96994 * 119.99847 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.88487 * 300.43515 * 15 14 12 27 27 H 1.08998 * 109.88594 * 61.45161 * 15 14 12 28 28 H 1.09000 * 110.71944 * 263.82840 * 16 15 14 29 29 H 1.09009 * 110.71823 * 140.55753 * 16 15 14 30 30 H 1.09003 * 109.46690 * 58.64837 * 19 17 16 31 31 H 1.08993 * 109.46773 * 298.65173 * 19 17 16 32 32 H 0.97001 * 120.00485 * 0.02562 * 21 20 19 33 33 H 0.97005 * 119.99790 * 179.72635 * 21 20 19 34 34 H 1.09000 * 110.36774 * 37.06263 * 23 14 12 35 35 H 1.09007 * 110.36592 * 274.74673 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0980 1.6964 -1.2125 5 1 1.2791 2.7464 -0.0006 6 1 3.0979 1.6965 1.2126 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3275 -2.3877 0.0005 10 6 2.0014 -3.5549 0.0005 11 8 3.2164 -3.5548 0.0010 12 6 1.2573 -4.8438 0.0011 13 8 0.0429 -4.8438 0.0011 14 7 1.9312 -6.0110 0.0006 15 6 3.3942 -6.1556 0.0004 16 6 3.7052 -7.6670 -0.0265 17 6 2.4048 -8.2790 -0.6111 18 1 2.3991 -8.2196 -1.6994 19 6 2.2198 -9.7238 -0.1427 20 6 0.9326 -10.2724 -0.7024 21 7 0.5601 -11.5367 -0.4208 22 8 0.2324 -9.5765 -1.4070 23 6 1.3233 -7.3540 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 0.3576 -2.3877 -0.0002 26 1 3.8142 -5.6751 -0.8832 27 1 3.8115 -5.7050 0.9009 28 1 3.8886 -8.0410 0.9808 29 1 4.5552 -7.8743 -0.6767 30 1 2.1831 -9.7507 0.9464 31 1 3.0557 -10.3291 -0.4931 32 1 1.1203 -12.0933 0.1424 33 1 -0.2704 -11.8885 -0.7778 34 1 0.4238 -7.3633 -0.6150 35 1 1.0902 -7.6650 1.0190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690741846.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:56 Heat of formation + Delta-G solvation = -143.174704 kcal Electronic energy + Delta-G solvation = -20398.371331 eV Core-core repulsion = 17008.774213 eV Total energy + Delta-G solvation = -3389.597117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58919 -40.57225 -39.34465 -38.38364 -36.28846 -34.61522 -33.91732 -33.36214 -30.68610 -28.77438 -27.53215 -25.27716 -23.24008 -22.11801 -20.90364 -20.76443 -20.04434 -18.49733 -18.19962 -17.81913 -17.36972 -17.13037 -16.79861 -16.49004 -15.81357 -15.67207 -15.19397 -14.79586 -14.70440 -14.41812 -14.00958 -13.70187 -13.67119 -13.35158 -12.96021 -12.71434 -12.59806 -12.44211 -12.12485 -11.99708 -11.95732 -11.67659 -11.56568 -10.88746 -10.56401 -10.29044 -10.16365 -9.76290 -8.66034 -6.11427 0.57197 1.39251 1.48517 1.52739 1.69770 1.75488 2.27052 2.33883 2.68187 3.08994 3.14000 3.56682 3.62562 3.87119 3.97920 4.15758 4.29557 4.40528 4.55213 4.68260 4.77606 4.87553 4.96102 5.02398 5.14194 5.23870 5.30512 5.42023 5.67540 5.98234 6.16913 6.32749 6.57755 6.73068 6.94924 7.26195 7.47221 7.78090 8.50076 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045695 B = 0.003752 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.616615 B = 7460.619720 C = 7963.796129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.008 4.008 3 Si 1.014 2.986 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.345 4.345 8 H 0.102 0.898 9 N -0.514 5.514 10 C 0.394 3.606 11 O -0.602 6.602 12 C 0.520 3.480 13 O -0.577 6.577 14 N -0.596 5.596 15 C 0.106 3.894 16 C -0.109 4.109 17 C -0.078 4.078 18 H 0.076 0.924 19 C -0.119 4.119 20 C 0.503 3.497 21 N -0.840 5.840 22 O -0.598 6.598 23 C 0.105 3.895 24 H 0.289 0.711 25 H 0.398 0.602 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.420 0.580 33 H 0.403 0.597 34 H 0.054 0.946 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.404 -22.553 2.344 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.211 4.211 3 Si 0.834 3.166 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.474 4.474 8 H 0.119 0.881 9 N -0.148 5.148 10 C 0.179 3.821 11 O -0.491 6.491 12 C 0.306 3.694 13 O -0.458 6.458 14 N -0.329 5.329 15 C -0.016 4.016 16 C -0.146 4.146 17 C -0.098 4.098 18 H 0.094 0.906 19 C -0.159 4.159 20 C 0.289 3.711 21 N -0.404 5.404 22 O -0.479 6.479 23 C -0.016 4.016 24 H 0.099 0.901 25 H 0.232 0.768 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.252 0.748 33 H 0.233 0.767 34 H 0.073 0.927 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.056 -21.794 1.937 22.990 hybrid contribution -0.936 0.657 -0.063 1.145 sum 6.120 -21.137 1.874 22.085 Atomic orbital electron populations 1.69566 1.07990 1.30883 1.45289 1.26617 0.96519 1.03647 0.94364 0.84708 0.77683 0.74490 0.79733 1.18771 1.19152 1.18605 1.19975 0.93732 0.82900 1.50825 0.88057 1.41655 1.10130 1.04786 1.58211 1.19396 0.87953 0.84834 0.89896 1.90517 1.13214 1.86972 1.58400 1.20063 0.86655 0.85395 0.77328 1.90667 1.14900 1.87982 1.52214 1.48295 1.09552 1.04802 1.70221 1.22264 0.78009 0.98931 1.02440 1.22837 0.97308 0.90217 1.04267 1.22065 0.93725 0.93501 1.00508 0.90574 1.21682 0.95708 0.94325 1.04193 1.21317 0.88220 0.82107 0.79414 1.43775 1.27905 1.13943 1.54759 1.90804 1.56861 1.59735 1.40498 1.22561 0.97718 0.80208 1.01111 0.90114 0.76757 0.92434 0.91548 0.87245 0.86871 0.85419 0.83878 0.74826 0.76687 0.92731 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.37 13.03 21.76 0.28 -50.08 16 2 C -0.01 -0.41 5.51 85.14 0.47 0.06 16 3 Si 1.01 41.84 29.56 68.60 2.03 43.87 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.34 -20.08 9.67 84.35 0.82 -19.27 16 8 H 0.10 5.97 7.15 -2.91 -0.02 5.95 16 9 N -0.51 -29.93 5.25 -308.88 -1.62 -31.55 16 10 C 0.39 21.69 7.78 87.08 0.68 22.36 16 11 O -0.60 -33.52 13.66 -3.71 -0.05 -33.57 16 12 C 0.52 25.97 7.89 87.08 0.69 26.65 16 13 O -0.58 -31.50 16.72 -3.53 -0.06 -31.56 16 14 N -0.60 -23.42 3.33 -814.10 -2.71 -26.13 16 15 C 0.11 3.34 5.49 86.73 0.48 3.81 16 16 C -0.11 -1.87 6.42 31.78 0.20 -1.67 16 17 C -0.08 -1.60 2.62 -9.41 -0.02 -1.62 16 18 H 0.08 1.85 8.07 -2.39 -0.02 1.83 16 19 C -0.12 -1.24 5.22 29.85 0.16 -1.09 16 20 C 0.50 8.71 7.89 87.66 0.69 9.40 16 21 N -0.84 -6.97 8.87 -173.53 -1.54 -8.51 16 22 O -0.60 -18.21 15.41 -3.04 -0.05 -18.25 16 23 C 0.11 3.33 5.67 86.85 0.49 3.82 16 24 H 0.29 14.80 8.30 -92.71 -0.77 14.03 16 25 H 0.40 23.73 7.35 -92.71 -0.68 23.05 16 26 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 27 H 0.07 2.24 7.68 -2.39 -0.02 2.22 16 28 H 0.11 1.24 8.04 -2.39 -0.02 1.23 16 29 H 0.11 1.37 8.14 -2.38 -0.02 1.36 16 30 H 0.13 0.68 8.10 -2.39 -0.02 0.67 16 31 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.42 0.08 8.83 -92.71 -0.82 -0.74 16 33 H 0.40 3.42 8.93 -92.70 -0.83 2.59 16 34 H 0.05 2.14 7.00 -2.39 -0.02 2.12 16 35 H 0.08 2.15 8.00 -2.38 -0.02 2.13 16 Total: -1.00 -83.52 302.64 -0.23 -83.75 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -1.17 Total: 29.58 kcal Atomic # 6 Polarization: 37.82 SS G_CDS: 4.65 Total: 42.46 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -5.58 Total: -116.27 kcal Atomic # 8 Polarization: -83.23 SS G_CDS: -0.16 Total: -83.39 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -83.52 -0.23 -83.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690741846.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.425 kcal (2) G-P(sol) polarization free energy of solvation -83.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds