Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99949 * 2 1 4 4 H 1.48501 * 109.47546 * 239.99872 * 3 2 1 5 5 H 1.48499 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47282 * 120.00058 * 3 2 1 7 7 C 1.37879 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99572 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47071 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47456 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46894 * 54.99436 * 11 10 9 13 13 N 1.46901 * 109.46571 * 294.99906 * 11 10 9 14 14 C 1.50694 * 109.47127 * 174.99609 * 11 10 9 15 15 O 1.21284 * 119.99499 * 100.00188 * 14 11 10 16 16 N 1.34770 * 120.00305 * 279.99882 * 14 11 10 17 17 C 1.47226 * 121.34609 * 180.02562 * 16 14 11 18 18 C 1.50755 * 108.36732 * 229.48760 * 17 16 14 19 19 O 1.21226 * 119.35984 * 155.57940 * 18 17 16 20 20 N 1.34066 * 121.28451 * 335.58297 * 18 17 16 21 21 C 1.34069 * 123.29404 * 2.26915 * 20 18 17 22 22 O 1.21219 * 119.36461 * 177.70576 * 21 20 18 23 23 C 1.47222 * 121.34618 * 359.97438 * 16 14 11 24 24 H 0.96998 * 119.99940 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47147 * 60.00261 * 9 7 2 26 26 H 1.08998 * 109.47520 * 300.00623 * 9 7 2 27 27 H 1.08998 * 109.47352 * 59.99860 * 10 9 7 28 28 H 1.09002 * 109.46907 * 299.99904 * 10 9 7 29 29 H 1.00897 * 110.99849 * 176.04658 * 13 11 10 30 30 H 1.00896 * 110.99988 * 299.99804 * 13 11 10 31 31 H 1.08999 * 109.68649 * 349.20802 * 17 16 14 32 32 H 1.09001 * 109.68487 * 109.77002 * 17 16 14 33 33 H 0.96999 * 118.35800 * 182.26717 * 20 18 17 34 34 H 1.09003 * 109.68686 * 250.22822 * 23 16 14 35 35 H 1.09000 * 109.68646 * 10.79010 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7885 -5.0068 -0.8432 13 7 0.7283 -5.1188 1.2538 14 6 2.4550 -6.1297 -0.1251 15 8 2.7865 -6.7535 0.8608 16 7 2.9583 -6.4584 -1.3313 17 6 3.9118 -7.5694 -1.4865 18 6 5.0866 -7.0779 -2.2932 19 8 6.1591 -7.6314 -2.1793 20 7 4.9685 -6.0405 -3.1342 21 6 3.8335 -5.3438 -3.2886 22 8 3.8178 -4.3916 -4.0385 23 6 2.5758 -5.7218 -2.5473 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8906 29 1 0.1639 -5.9552 1.2511 30 1 1.3478 -5.1033 2.0500 31 1 4.2527 -7.9003 -0.5055 32 1 3.4297 -8.3971 -2.0067 33 1 5.7431 -5.7808 -3.6571 34 1 1.9529 -6.3547 -3.1794 35 1 2.0262 -4.8212 -2.2734 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691601652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = -130.736603 kcal Electronic energy + Delta-G solvation = -20946.082040 eV Core-core repulsion = 17557.024279 eV Total energy + Delta-G solvation = -3389.057761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.75993 -40.94915 -40.12742 -37.22601 -36.91821 -35.56205 -34.82534 -31.94160 -30.73497 -29.13819 -27.73512 -25.26853 -24.46834 -22.37057 -21.42044 -20.35211 -19.19706 -19.06671 -18.30593 -18.04173 -17.68279 -16.97908 -16.86402 -16.42674 -16.21767 -15.77346 -15.62962 -15.43453 -15.00027 -14.45252 -14.22805 -13.95613 -13.75327 -13.44264 -13.23517 -12.79479 -12.57925 -12.47475 -12.27511 -11.77841 -11.69025 -11.53586 -11.51208 -11.26030 -11.03487 -10.47262 -10.15661 -9.65408 -8.13266 -6.22222 0.25211 1.13406 1.27917 1.41988 1.43143 1.50857 1.63376 1.81711 2.44559 2.57640 3.20331 3.23108 3.42952 3.65055 3.89939 4.05072 4.14703 4.25750 4.26440 4.42787 4.69036 4.79935 4.85511 4.92078 5.22593 5.57934 5.59354 5.77252 5.86403 6.00271 6.11685 6.16078 6.31581 6.54616 6.58891 6.78945 6.95998 7.45554 8.97336 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.005405 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.744121 B = 5179.517372 C = 6033.925508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.041 3.959 10 C -0.086 4.086 11 C 0.084 3.916 12 H 0.125 0.875 13 N -0.817 5.817 14 C 0.503 3.497 15 O -0.557 6.557 16 N -0.614 5.614 17 C 0.096 3.904 18 C 0.528 3.472 19 O -0.526 6.526 20 N -0.669 5.669 21 C 0.523 3.477 22 O -0.518 6.518 23 C 0.086 3.914 24 H 0.262 0.738 25 H 0.001 0.999 26 H 0.011 0.989 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.352 0.648 30 H 0.346 0.654 31 H 0.130 0.870 32 H 0.162 0.838 33 H 0.415 0.585 34 H 0.172 0.828 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.862 -17.323 -6.663 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.068 0.932 9 C 0.004 3.996 10 C -0.124 4.124 11 C -0.032 4.032 12 H 0.143 0.857 13 N -0.346 5.346 14 C 0.291 3.709 15 O -0.434 6.434 16 N -0.351 5.351 17 C -0.029 4.029 18 C 0.317 3.683 19 O -0.400 6.400 20 N -0.334 5.334 21 C 0.312 3.688 22 O -0.390 6.390 23 C -0.038 4.038 24 H 0.071 0.929 25 H 0.019 0.981 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.166 0.834 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.179 0.821 33 H 0.255 0.745 34 H 0.189 0.811 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.880 -16.692 -6.513 18.332 hybrid contribution 1.465 0.431 -0.093 1.530 sum 5.345 -16.260 -6.605 18.347 Atomic orbital electron populations 1.70062 1.07331 1.27514 1.51585 1.25774 0.95646 1.02580 0.95051 0.85729 0.78514 0.79334 0.78826 1.19616 1.20710 1.19723 1.21684 0.93143 0.93027 1.50518 0.93207 1.18812 0.93765 0.90778 0.96287 1.21450 0.97898 0.92562 1.00537 1.21765 0.93729 0.91263 0.96422 0.85734 1.58945 1.27054 1.45642 1.02984 1.22541 0.81646 0.85056 0.81630 1.90692 1.61114 1.54598 1.37012 1.48331 1.45737 1.33543 1.07512 1.22174 0.86392 0.91076 1.03223 1.21519 0.90826 0.77946 0.78051 1.90824 1.29092 1.55488 1.64553 1.44889 1.16223 1.31175 1.41085 1.21516 0.85511 0.80799 0.81021 1.90882 1.84363 1.26511 1.37293 1.22560 0.93465 1.01704 0.86096 0.92895 0.98085 0.97100 0.93844 0.92229 0.83431 0.83982 0.85247 0.82097 0.74519 0.81095 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.11 13.29 21.45 0.28 -54.82 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.55 -30.37 9.11 25.60 0.23 -30.14 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.04 2.00 4.86 29.85 0.15 2.14 16 10 C -0.09 -3.17 4.46 30.60 0.14 -3.03 16 11 C 0.08 2.31 2.29 44.17 0.10 2.41 16 12 H 0.13 2.90 6.93 -2.39 -0.02 2.88 16 13 N -0.82 -23.38 8.44 -171.80 -1.45 -24.83 16 14 C 0.50 12.15 6.96 87.66 0.61 12.76 16 15 O -0.56 -16.38 15.76 -3.04 -0.05 -16.43 16 16 N -0.61 -10.55 3.03 -826.48 -2.50 -13.05 16 17 C 0.10 1.34 6.57 85.51 0.56 1.90 16 18 C 0.53 9.64 7.89 87.79 0.69 10.34 16 19 O -0.53 -13.06 17.87 -2.86 -0.05 -13.11 16 20 N -0.67 -11.98 5.06 -428.43 -2.17 -14.15 16 21 C 0.52 10.40 7.89 87.80 0.69 11.09 16 22 O -0.52 -14.61 17.87 -2.84 -0.05 -14.66 16 23 C 0.09 1.27 5.97 85.53 0.51 1.78 16 24 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 25 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 26 H 0.01 0.57 7.75 -2.39 -0.02 0.55 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 2.08 6.91 -2.39 -0.02 2.07 16 29 H 0.35 8.11 9.06 -89.70 -0.81 7.29 16 30 H 0.35 10.35 8.58 -89.70 -0.77 9.58 16 31 H 0.13 2.22 7.13 -2.39 -0.02 2.20 16 32 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.41 7.10 8.76 -92.71 -0.81 6.28 16 34 H 0.17 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.14 2.48 4.92 -2.39 -0.01 2.46 16 Total: -1.00 -75.32 302.31 -1.04 -76.36 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -1.23 Total: 18.19 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 4.15 Total: 10.16 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -5.84 Total: -106.86 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.15 Total: -44.20 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -75.32 -1.04 -76.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.374 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds