Wall clock time and date at job start Mon Mar 30 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47414 * 297.97611 * 3 2 1 5 5 C 1.37101 * 119.99934 * 96.07772 * 4 3 2 6 6 H 1.07999 * 119.99843 * 159.27797 * 5 4 3 7 7 C 1.38942 * 120.00080 * 339.27108 * 5 4 3 8 8 N 1.31417 * 120.00234 * 349.31780 * 7 5 4 9 9 Si 1.86800 * 120.00195 * 169.31056 * 7 5 4 10 10 H 1.48507 * 109.46886 * 60.00617 * 9 7 5 11 11 H 1.48503 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47364 * 300.00714 * 9 7 5 13 13 C 1.34782 * 120.00352 * 276.08188 * 4 3 2 14 14 O 1.21288 * 120.00083 * 185.80080 * 13 4 3 15 15 C 1.50701 * 119.99576 * 5.79809 * 13 4 3 16 16 H 1.09006 * 110.67375 * 37.92528 * 15 13 4 17 17 C 1.54893 * 110.91388 * 161.27369 * 15 13 4 18 18 C 1.54265 * 104.19480 * 156.33082 * 17 15 13 19 19 H 1.08997 * 117.76155 * 116.75127 * 18 17 15 20 20 C 1.53872 * 106.60067 * 336.38779 * 18 17 15 21 21 H 1.08998 * 121.33258 * 138.06690 * 20 18 17 22 22 C 1.54268 * 106.59755 * 0.02562 * 20 18 17 23 23 C 1.53002 * 60.87468 * 246.52691 * 20 18 17 24 24 F 1.39903 * 117.46045 * 108.13130 * 23 20 18 25 25 F 1.39897 * 117.46154 * 252.93003 * 23 20 18 26 26 H 4.40639 * 5.51287 * 179.97438 * 4 1 2 27 27 H 1.09009 * 109.46600 * 177.97944 * 3 2 1 28 28 H 1.08995 * 109.47544 * 57.98005 * 3 2 1 29 29 H 0.97001 * 120.00456 * 179.97438 * 8 7 5 30 30 H 1.09000 * 110.48039 * 275.00856 * 17 15 13 31 31 H 1.08998 * 110.48914 * 37.64835 * 17 15 13 32 32 H 1.09005 * 110.48344 * 264.93212 * 22 20 18 33 33 H 1.08998 * 110.48508 * 142.29254 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1346 -0.6470 1.2197 5 6 3.4823 -1.9731 1.1996 6 1 4.1383 -2.3709 1.9597 7 6 2.9905 -2.8051 0.2015 8 7 2.0348 -2.3820 -0.5951 9 14 3.6879 -4.5253 -0.0083 10 1 3.4775 -5.3005 1.2408 11 1 2.9982 -5.2052 -1.1342 12 1 5.1417 -4.4382 -0.2978 13 6 3.2424 0.0606 2.3618 14 8 3.7447 -0.4448 3.3433 15 6 2.7388 1.4798 2.4191 16 1 1.8177 1.5848 1.8458 17 6 2.5276 1.9328 3.8852 18 6 2.6232 3.4713 3.8232 19 1 1.7378 4.0463 4.0942 20 6 3.4439 3.8105 2.5666 21 1 3.1579 4.6297 1.9069 22 6 3.8179 2.4664 1.9084 23 6 4.0271 4.1280 3.9451 24 9 5.0880 3.3347 4.3951 25 9 4.0728 5.4715 4.3324 26 1 -1.0499 0.0001 0.0002 27 1 3.0088 1.0280 -0.0362 28 1 3.0096 -0.5440 -0.8713 29 1 1.6917 -2.9627 -1.2922 30 1 1.5443 1.6257 4.2413 31 1 3.3104 1.5274 4.5263 32 1 4.8091 2.1468 2.2302 33 1 3.7766 2.5490 0.8223 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693365823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:27 Heat of formation + Delta-G solvation = -33.075859 kcal Electronic energy + Delta-G solvation = -20762.650251 eV Core-core repulsion = 17234.447111 eV Total energy + Delta-G solvation = -3528.203140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.54842 -47.23301 -39.62077 -37.63835 -35.19297 -32.27941 -31.29051 -30.82823 -28.31917 -26.48746 -25.06554 -22.86235 -20.95793 -20.17151 -18.64173 -17.88398 -17.74925 -17.04337 -16.50181 -15.89064 -15.74156 -15.09426 -14.65803 -14.07843 -13.98698 -13.87260 -13.48031 -13.08489 -12.95852 -12.74322 -12.31685 -12.20962 -11.79867 -11.49110 -11.36202 -11.12678 -11.00922 -10.79769 -10.56179 -10.34781 -10.10315 -9.67488 -9.42734 -9.29599 -8.86228 -8.45568 -7.87018 -6.32291 -3.93325 2.95428 3.03224 3.17371 3.23101 3.26348 3.65124 3.84651 4.01395 4.14296 4.23937 4.29460 4.66660 4.91960 5.00896 5.07101 5.18086 5.39128 5.44447 5.51497 5.58445 5.70416 5.91978 5.97777 6.02748 6.12688 6.32569 6.37213 6.59354 6.81415 7.03394 7.52565 8.03270 8.40103 8.77682 9.10126 9.32148 9.86156 10.67030 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.030734 B = 0.005467 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.833444 B = 5120.292594 C = 5646.759815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.107 4.107 3 C 0.230 3.770 4 N -0.441 5.441 5 C -0.310 4.310 6 H 0.103 0.897 7 C 0.029 3.971 8 N -0.874 5.874 9 Si 0.928 3.072 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.462 3.538 14 O -0.578 6.578 15 C -0.104 4.104 16 H 0.095 0.905 17 C -0.080 4.080 18 C -0.151 4.151 19 H 0.134 0.866 20 C -0.156 4.156 21 H 0.134 0.866 22 C -0.088 4.088 23 C 0.204 3.796 24 F -0.155 7.155 25 F -0.164 7.164 26 H 0.198 0.802 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.269 0.731 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 11.426 1.007 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.109 4.109 3 C 0.107 3.893 4 N -0.159 5.159 5 C -0.438 4.438 6 H 0.120 0.880 7 C -0.174 4.174 8 N -0.513 5.513 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.250 3.750 14 O -0.462 6.462 15 C -0.126 4.126 16 H 0.113 0.887 17 C -0.117 4.117 18 C -0.170 4.170 19 H 0.152 0.848 20 C -0.175 4.175 21 H 0.151 0.849 22 C -0.126 4.126 23 C 0.167 3.833 24 F -0.135 7.135 25 F -0.144 7.144 26 H 0.215 0.785 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.632 11.059 1.332 11.157 hybrid contribution -0.054 -0.701 -0.219 0.737 sum -0.685 10.357 1.113 10.439 Atomic orbital electron populations 1.24272 0.95389 1.06279 1.02805 1.23224 0.94375 0.95295 0.97972 1.18427 0.84162 0.95332 0.91387 1.43634 1.56018 1.09829 1.06381 1.19658 1.27507 0.83310 1.13279 0.87977 1.25334 0.95265 0.99887 0.96889 1.69961 1.24332 1.37227 1.19804 0.85968 0.78934 0.81683 0.77944 1.19902 1.20995 1.19882 1.19785 0.84494 0.87372 0.83312 1.90523 1.48341 1.72060 1.35247 1.22354 0.99291 0.94120 0.96830 0.88660 1.21839 1.04047 0.88959 0.96902 1.25054 0.92759 0.98746 1.00469 0.84802 1.24618 1.01016 1.01216 0.90632 0.84863 1.22014 1.00040 0.90001 1.00496 1.20695 0.87447 0.74862 1.00255 1.93024 1.57853 1.72337 1.90295 1.92989 1.96809 1.32404 1.92229 0.78466 0.92341 0.86448 0.92044 0.90105 0.88671 0.89757 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.33 19.25 29.55 0.57 -4.76 16 2 C -0.11 -2.29 10.24 -37.12 -0.38 -2.67 16 3 C 0.23 4.88 4.82 -6.83 -0.03 4.85 16 4 N -0.44 -10.74 2.60 -117.94 -0.31 -11.05 16 5 C -0.31 -8.33 9.36 -14.93 -0.14 -8.47 16 6 H 0.10 2.89 7.34 -52.49 -0.39 2.50 16 7 C 0.03 0.75 5.11 -17.47 -0.09 0.66 16 8 N -0.87 -22.32 9.02 55.50 0.50 -21.82 16 9 Si 0.93 20.31 29.57 -169.99 -5.03 15.28 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.46 10.76 6.79 -10.98 -0.07 10.69 16 14 O -0.58 -15.49 15.43 5.55 0.09 -15.40 16 15 C -0.10 -1.83 2.30 -89.79 -0.21 -2.04 16 16 H 0.10 1.63 6.43 -51.93 -0.33 1.29 16 17 C -0.08 -1.27 5.80 -25.07 -0.15 -1.42 16 18 C -0.15 -1.94 7.02 -88.20 -0.62 -2.56 16 19 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 20 C -0.16 -1.94 6.84 -89.50 -0.61 -2.55 16 21 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 22 C -0.09 -1.30 5.61 -25.08 -0.14 -1.44 16 23 C 0.20 2.85 5.22 -25.42 -0.13 2.72 16 24 F -0.15 -2.55 16.34 2.25 0.04 -2.51 16 25 F -0.16 -2.24 17.60 2.25 0.04 -2.20 16 26 H 0.20 3.18 7.80 -54.10 -0.42 2.76 16 27 H 0.06 1.02 5.53 -51.92 -0.29 0.74 16 28 H 0.12 2.67 6.32 -51.93 -0.33 2.35 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.75 6.88 -51.93 -0.36 1.39 16 32 H 0.08 1.39 7.52 -51.93 -0.39 1.00 16 33 H 0.09 1.11 6.69 -51.93 -0.35 0.76 16 LS Contribution 287.47 15.07 4.33 4.33 Total: -1.00 -29.98 287.47 -5.60 -35.57 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.25 Total: 4.78 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.00 Total: -6.98 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.19 Total: -32.87 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.08 Total: -4.71 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.98 -5.60 -35.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693365823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.497 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds