Wall clock time and date at job start Mon Mar 30 2020 04:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47414 * 297.97611 * 3 2 1 5 5 C 1.37101 * 119.99934 * 96.07772 * 4 3 2 6 6 H 1.07999 * 119.99843 * 159.27797 * 5 4 3 7 7 C 1.38942 * 120.00080 * 339.27108 * 5 4 3 8 8 N 1.31417 * 120.00234 * 349.31780 * 7 5 4 9 9 Si 1.86800 * 120.00195 * 169.31056 * 7 5 4 10 10 H 1.48507 * 109.46886 * 60.00617 * 9 7 5 11 11 H 1.48503 * 109.47320 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47364 * 300.00714 * 9 7 5 13 13 C 1.34782 * 120.00352 * 276.08188 * 4 3 2 14 14 O 1.21288 * 120.00083 * 185.80080 * 13 4 3 15 15 C 1.50701 * 119.99576 * 5.79809 * 13 4 3 16 16 H 1.09006 * 110.67375 * 37.92528 * 15 13 4 17 17 C 1.54893 * 110.91388 * 161.27369 * 15 13 4 18 18 C 1.54265 * 104.19480 * 156.33082 * 17 15 13 19 19 H 1.08997 * 117.76155 * 116.75127 * 18 17 15 20 20 C 1.53872 * 106.60067 * 336.38779 * 18 17 15 21 21 H 1.08998 * 121.33258 * 138.06690 * 20 18 17 22 22 C 1.54268 * 106.59755 * 0.02562 * 20 18 17 23 23 C 1.53002 * 60.87468 * 246.52691 * 20 18 17 24 24 F 1.39903 * 117.46045 * 108.13130 * 23 20 18 25 25 F 1.39897 * 117.46154 * 252.93003 * 23 20 18 26 26 H 4.40639 * 5.51287 * 179.97438 * 4 1 2 27 27 H 1.09009 * 109.46600 * 177.97944 * 3 2 1 28 28 H 1.08995 * 109.47544 * 57.98005 * 3 2 1 29 29 H 0.97001 * 120.00456 * 179.97438 * 8 7 5 30 30 H 1.09000 * 110.48039 * 275.00856 * 17 15 13 31 31 H 1.08998 * 110.48914 * 37.64835 * 17 15 13 32 32 H 1.09005 * 110.48344 * 264.93212 * 22 20 18 33 33 H 1.08998 * 110.48508 * 142.29254 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1346 -0.6470 1.2197 5 6 3.4823 -1.9731 1.1996 6 1 4.1383 -2.3709 1.9597 7 6 2.9905 -2.8051 0.2015 8 7 2.0348 -2.3820 -0.5951 9 14 3.6879 -4.5253 -0.0083 10 1 3.4775 -5.3005 1.2408 11 1 2.9982 -5.2052 -1.1342 12 1 5.1417 -4.4382 -0.2978 13 6 3.2424 0.0606 2.3618 14 8 3.7447 -0.4448 3.3433 15 6 2.7388 1.4798 2.4191 16 1 1.8177 1.5848 1.8458 17 6 2.5276 1.9328 3.8852 18 6 2.6232 3.4713 3.8232 19 1 1.7378 4.0463 4.0942 20 6 3.4439 3.8105 2.5666 21 1 3.1579 4.6297 1.9069 22 6 3.8179 2.4664 1.9084 23 6 4.0271 4.1280 3.9451 24 9 5.0880 3.3347 4.3951 25 9 4.0728 5.4715 4.3324 26 1 -1.0499 0.0001 0.0002 27 1 3.0088 1.0280 -0.0362 28 1 3.0096 -0.5440 -0.8713 29 1 1.6917 -2.9627 -1.2922 30 1 1.5443 1.6257 4.2413 31 1 3.3104 1.5274 4.5263 32 1 4.8091 2.1468 2.2302 33 1 3.7766 2.5490 0.8223 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693365823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:27 Heat of formation + Delta-G solvation = -49.670167 kcal Electronic energy + Delta-G solvation = -20763.369834 eV Core-core repulsion = 17234.447111 eV Total energy + Delta-G solvation = -3528.922723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.65293 -48.35952 -41.14507 -39.10080 -37.05684 -34.07352 -32.99677 -32.24623 -29.52288 -28.23031 -26.83877 -24.31346 -22.20842 -21.24121 -20.26722 -19.63887 -18.87193 -18.57378 -18.06204 -17.39014 -16.88745 -16.54471 -16.31995 -15.77608 -15.58215 -15.05124 -14.74531 -14.59239 -14.27904 -14.16784 -13.88689 -13.75807 -13.35666 -13.13783 -12.78721 -12.56224 -12.49395 -12.37390 -12.20499 -12.03115 -11.32021 -11.22011 -10.98823 -10.73957 -10.53619 -10.30006 -9.78030 -8.27026 -5.95797 1.38263 1.42296 1.51278 1.79642 1.92803 2.07429 2.18684 2.34271 2.43744 3.02130 3.06913 3.18110 3.38441 3.60548 3.89896 3.97249 4.06784 4.11864 4.18988 4.29488 4.54067 4.57637 4.64856 4.80512 4.93714 5.03160 5.08157 5.11332 5.27854 5.46107 5.49888 6.08969 6.47511 7.15701 7.19426 7.44058 7.99452 8.68938 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.030734 B = 0.005467 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.833444 B = 5120.292594 C = 5646.759815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.148 4.148 3 C 0.233 3.767 4 N -0.453 5.453 5 C -0.348 4.348 6 H 0.072 0.928 7 C 0.002 3.998 8 N -0.878 5.878 9 Si 0.985 3.015 10 H -0.282 1.282 11 H -0.271 1.271 12 H -0.269 1.269 13 C 0.451 3.549 14 O -0.628 6.628 15 C -0.096 4.096 16 H 0.109 0.891 17 C -0.083 4.083 18 C -0.136 4.136 19 H 0.172 0.828 20 C -0.134 4.134 21 H 0.175 0.825 22 C -0.088 4.088 23 C 0.184 3.816 24 F -0.178 7.178 25 F -0.160 7.160 26 H 0.232 0.768 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.272 0.728 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 13.076 -0.228 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.150 4.150 3 C 0.111 3.889 4 N -0.170 5.170 5 C -0.475 4.475 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.516 5.516 9 Si 0.809 3.191 10 H -0.208 1.208 11 H -0.196 1.196 12 H -0.194 1.194 13 C 0.241 3.759 14 O -0.515 6.515 15 C -0.118 4.118 16 H 0.127 0.873 17 C -0.121 4.121 18 C -0.154 4.154 19 H 0.190 0.810 20 C -0.152 4.152 21 H 0.193 0.807 22 C -0.126 4.126 23 C 0.147 3.853 24 F -0.158 7.158 25 F -0.141 7.141 26 H 0.249 0.751 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.270 12.736 0.066 12.936 hybrid contribution 0.430 -1.252 0.185 1.337 sum -1.840 11.483 0.251 11.633 Atomic orbital electron populations 1.25123 0.96316 1.04481 1.00886 1.23415 0.94896 0.96960 0.99701 1.18444 0.84675 0.96606 0.89184 1.43841 1.56041 1.09294 1.07836 1.19550 1.28851 0.85287 1.13845 0.91027 1.25946 0.95253 1.02733 0.96090 1.70069 1.24092 1.38008 1.19449 0.85124 0.78634 0.77671 0.77642 1.20786 1.19578 1.19382 1.20786 0.83278 0.89486 0.82309 1.90482 1.50334 1.73740 1.36905 1.22288 1.00288 0.90750 0.98445 0.87272 1.21790 1.03402 0.91617 0.95297 1.25051 0.93409 0.96440 1.00538 0.81027 1.24669 0.99443 1.00768 0.90328 0.80748 1.21989 0.97778 0.90663 1.02127 1.20989 0.87523 0.74907 1.01858 1.92980 1.59076 1.73087 1.90703 1.92993 1.96784 1.31976 1.92333 0.75135 0.88689 0.88491 0.91825 0.89130 0.91996 0.92221 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.21 19.25 74.32 1.43 -7.78 16 2 C -0.15 -6.11 10.24 31.13 0.32 -5.80 16 3 C 0.23 9.78 4.82 84.58 0.41 10.19 16 4 N -0.45 -22.56 2.60 -645.42 -1.68 -24.24 16 5 C -0.35 -19.36 9.36 84.04 0.79 -18.58 16 6 H 0.07 4.32 7.34 -2.91 -0.02 4.30 16 7 C 0.00 0.12 5.11 84.92 0.43 0.55 16 8 N -0.88 -44.52 9.02 21.66 0.20 -44.33 16 9 Si 0.98 42.00 29.57 68.60 2.03 44.03 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 13 C 0.45 21.61 6.79 87.66 0.59 22.21 16 14 O -0.63 -35.53 15.43 -3.05 -0.05 -35.57 16 15 C -0.10 -3.30 2.30 -10.26 -0.02 -3.32 16 16 H 0.11 3.46 6.43 -2.38 -0.02 3.45 16 17 C -0.08 -2.59 5.80 31.67 0.18 -2.41 16 18 C -0.14 -3.07 7.02 -9.22 -0.06 -3.13 16 19 H 0.17 2.65 8.14 -2.39 -0.02 2.63 16 20 C -0.13 -2.86 6.84 -10.07 -0.07 -2.93 16 21 H 0.18 2.41 8.14 -2.39 -0.02 2.39 16 22 C -0.09 -2.44 5.61 31.66 0.18 -2.26 16 23 C 0.18 4.78 5.22 31.44 0.16 4.95 16 24 F -0.18 -5.92 16.34 44.97 0.73 -5.19 16 25 F -0.16 -3.99 17.60 44.97 0.79 -3.20 16 26 H 0.23 6.51 7.80 -4.42 -0.03 6.48 16 27 H 0.10 3.16 5.53 -2.38 -0.01 3.15 16 28 H 0.10 4.43 6.32 -2.39 -0.02 4.42 16 29 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 2.36 6.88 -2.39 -0.02 2.35 16 32 H 0.06 1.98 7.52 -2.38 -0.02 1.96 16 33 H 0.11 2.51 6.69 -2.39 -0.02 2.49 16 Total: -1.00 -68.11 287.47 7.51 -60.60 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 1.14 Total: 16.21 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 4.34 Total: -8.32 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.48 Total: -68.57 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.05 Total: -35.57 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 1.53 Total: -8.39 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.11 7.51 -60.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693365823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.934 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds