Wall clock time and date at job start Mon Mar 30 2020 05:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86798 * 120.00064 * 2 1 4 4 H 1.48506 * 109.47156 * 240.00370 * 3 2 1 5 5 H 1.48506 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47543 * 120.00286 * 3 2 1 7 7 C 1.40346 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.40190 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.32467 * 125.30654 * 0.19734 * 9 7 2 11 11 C 1.33974 * 109.77901 * 180.27760 * 10 9 7 12 12 C 1.40541 * 133.19391 * 179.76683 * 11 10 9 13 13 C 1.36351 * 119.84539 * 179.97438 * 12 11 10 14 14 C 1.39040 * 120.76193 * 0.02562 * 13 12 11 15 15 C 1.37957 * 120.57378 * 359.97438 * 14 13 12 16 16 C 1.38715 * 119.76802 * 0.02562 * 15 14 13 17 17 N 1.37855 * 125.30427 * 179.97438 * 9 7 2 18 18 C 1.46496 * 126.53457 * 359.97438 * 17 9 7 19 19 C 1.50707 * 109.46989 * 269.68475 * 18 17 9 20 20 N 1.33236 * 125.52555 * 269.96083 * 19 18 17 21 21 C 1.30839 * 109.82829 * 180.02562 * 20 19 18 22 22 N 1.34432 * 108.07342 * 0.02562 * 21 20 19 23 23 H 0.97005 * 126.81819 * 180.25953 * 22 21 20 24 24 N 1.30707 * 125.52314 * 90.00037 * 19 18 17 25 25 H 0.97002 * 119.99429 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.07620 * 359.95580 * 12 11 10 27 27 H 1.08006 * 119.61857 * 180.02562 * 13 12 11 28 28 H 1.08006 * 119.71337 * 179.97438 * 14 13 12 29 29 H 1.08000 * 120.11518 * 180.02562 * 15 14 13 30 30 H 1.09004 * 109.47247 * 149.68892 * 18 17 9 31 31 H 1.09000 * 109.47331 * 29.68609 * 18 17 9 32 32 H 1.08001 * 125.96093 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0937 1.6964 -1.2126 5 1 1.2749 2.7465 -0.0006 6 1 3.0938 1.6964 1.2124 7 6 2.0076 -1.2154 0.0005 8 1 3.0876 -1.2154 0.0001 9 6 1.3067 -2.4295 0.0005 10 7 -0.0123 -2.5520 -0.0037 11 6 -0.3472 -3.8491 0.0038 12 6 -1.5798 -4.5244 0.0079 13 6 -1.6066 -5.8877 0.0152 14 6 -0.4261 -6.6222 0.0193 15 6 0.7972 -5.9844 0.0154 16 6 0.8512 -4.5983 0.0080 17 7 1.8826 -3.6820 0.0005 18 6 3.3163 -3.9826 0.0000 19 6 3.8058 -4.0936 -1.4210 20 7 3.8354 -5.2120 -2.1445 21 6 4.3174 -4.9584 -3.3342 22 7 4.6112 -3.6479 -3.3945 23 1 4.9805 -3.1693 -4.1531 24 7 4.2707 -3.1084 -2.1433 25 1 -0.4849 0.8401 0.0004 26 1 -2.5035 -3.9649 0.0055 27 1 -2.5559 -6.4029 0.0179 28 1 -0.4671 -7.7014 0.0255 29 1 1.7096 -6.5622 0.0182 30 1 3.4901 -4.9254 0.5188 31 1 3.8554 -3.1833 0.5086 32 1 4.4552 -5.6765 -4.1290 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694624658.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:18 Heat of formation + Delta-G solvation = 158.581394 kcal Electronic energy + Delta-G solvation = -19787.306873 eV Core-core repulsion = 16750.396553 eV Total energy + Delta-G solvation = -3036.910320 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.88036 -40.26106 -36.07422 -33.94650 -33.25106 -31.90269 -30.92710 -29.23572 -28.57916 -26.28991 -25.74666 -22.63913 -21.31260 -20.82639 -20.42266 -19.27536 -18.17690 -16.92152 -16.09553 -16.02074 -15.15737 -14.84987 -14.77180 -14.35464 -13.96678 -12.96264 -12.83574 -12.67416 -12.60791 -11.97290 -11.85960 -11.50700 -11.34038 -10.95309 -10.54785 -10.50077 -10.33176 -10.27625 -9.91540 -9.83136 -9.51391 -9.34747 -8.96454 -7.85475 -7.19460 -6.82173 -6.63849 -4.56888 1.78955 2.34071 2.70217 2.87273 3.00079 3.04927 3.05335 3.07815 3.85402 4.11947 4.21845 4.37261 4.83402 5.00782 5.15687 5.58158 5.64983 5.74802 5.85256 5.93879 6.14842 6.39209 6.47299 6.56052 6.63987 6.79194 6.90886 7.04993 7.16019 7.32527 7.53292 7.68841 7.78342 7.97315 8.04579 8.28031 8.37936 8.67543 9.04135 9.99370 10.25135 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.009587 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.446966 B = 2919.969475 C = 4784.567555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.077 3.923 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.430 4.430 8 H 0.089 0.911 9 C 0.422 3.578 10 N -0.537 5.537 11 C 0.112 3.888 12 C -0.134 4.134 13 C -0.121 4.121 14 C -0.185 4.185 15 C -0.091 4.091 16 C -0.002 4.002 17 N -0.533 5.533 18 C 0.225 3.775 19 C 0.215 3.785 20 N -0.531 5.531 21 C 0.250 3.750 22 N -0.489 5.489 23 H 0.438 0.562 24 N -0.284 5.284 25 H 0.279 0.721 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.182 -5.547 -4.723 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.467 4.467 8 H 0.107 0.893 9 C 0.187 3.813 10 N -0.261 5.261 11 C -0.015 4.015 12 C -0.156 4.156 13 C -0.142 4.142 14 C -0.206 4.206 15 C -0.112 4.112 16 C -0.109 4.109 17 N -0.231 5.231 18 C 0.097 3.903 19 C -0.069 4.069 20 N -0.259 5.259 21 C -0.050 4.050 22 N -0.207 5.207 23 H 0.283 0.717 24 N -0.114 5.114 25 H 0.090 0.910 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.457 -4.355 -4.286 9.640 hybrid contribution 1.289 0.130 -1.016 1.647 sum 8.746 -4.225 -5.302 11.066 Atomic orbital electron populations 1.69982 1.07195 1.28625 1.28002 1.25864 0.94880 1.00791 0.93512 0.86229 0.79873 0.79858 0.79963 1.18892 1.20095 1.18752 1.18489 0.94131 0.87308 1.46783 0.89304 1.20483 0.87135 0.83302 0.90398 1.71410 1.08884 1.12819 1.32997 1.19561 0.92051 0.91513 0.98394 1.19744 0.94934 0.93185 1.07701 1.20212 0.96918 0.93501 1.03537 1.20285 0.91862 0.97763 1.10707 1.19638 0.97216 0.90301 1.04073 1.18828 0.89476 0.91487 1.11104 1.45379 1.02701 1.06631 1.68402 1.19382 0.81257 1.03265 0.86374 1.24860 0.97107 0.85928 0.99018 1.70401 1.22452 1.29690 1.03386 1.26017 0.95633 0.86161 0.97140 1.48202 1.50427 1.08341 1.13744 0.71677 1.78163 1.21287 1.21023 0.90878 0.90987 0.87539 0.87943 0.87900 0.88171 0.88463 0.87610 0.76518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.34 11.85 55.57 0.66 -18.68 16 2 C 0.08 1.94 5.50 -17.29 -0.10 1.85 16 3 Si 0.92 18.46 29.56 -169.99 -5.03 13.44 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.43 -11.21 8.99 -38.06 -0.34 -11.55 16 8 H 0.09 2.14 7.09 -52.49 -0.37 1.77 16 9 C 0.42 11.58 7.41 -155.67 -1.15 10.43 16 10 N -0.54 -15.78 9.33 -10.30 -0.10 -15.87 16 11 C 0.11 3.01 7.21 -84.89 -0.61 2.40 16 12 C -0.13 -3.18 10.07 -39.39 -0.40 -3.58 16 13 C -0.12 -2.48 9.96 -39.96 -0.40 -2.87 16 14 C -0.19 -3.70 10.03 -39.39 -0.40 -4.09 16 15 C -0.09 -1.95 10.04 -39.51 -0.40 -2.35 16 16 C 0.00 -0.06 6.88 -83.75 -0.58 -0.64 16 17 N -0.53 -12.87 2.84 -114.76 -0.33 -13.20 16 18 C 0.22 4.38 6.53 -5.19 -0.03 4.35 16 19 C 0.22 4.11 7.72 -156.86 -1.21 2.89 16 20 N -0.53 -9.20 11.19 -11.97 -0.13 -9.34 16 21 C 0.25 3.16 13.13 -90.65 -1.19 1.97 16 22 N -0.49 -6.45 7.45 29.53 0.22 -6.23 16 23 H 0.44 3.89 8.96 -182.33 -1.63 2.25 16 24 N -0.28 -5.26 12.80 32.42 0.41 -4.85 16 25 H 0.28 6.81 8.29 -40.82 -0.34 6.48 16 26 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 27 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 28 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 29 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 30 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.11 1.92 7.31 -51.93 -0.38 1.54 16 32 H 0.22 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -34.90 289.90 -10.78 -45.68 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.06 Total: 5.87 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -6.80 Total: -1.19 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: 0.74 Total: -68.16 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.90 -10.78 -45.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694624658.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.257 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds