Wall clock time and date at job start Mon Mar 30 2020 05:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86798 * 120.00064 * 2 1 4 4 H 1.48506 * 109.47156 * 240.00370 * 3 2 1 5 5 H 1.48506 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47543 * 120.00286 * 3 2 1 7 7 C 1.40346 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.40190 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.32467 * 125.30654 * 0.19734 * 9 7 2 11 11 C 1.33974 * 109.77901 * 180.27760 * 10 9 7 12 12 C 1.40541 * 133.19391 * 179.76683 * 11 10 9 13 13 C 1.36351 * 119.84539 * 179.97438 * 12 11 10 14 14 C 1.39040 * 120.76193 * 0.02562 * 13 12 11 15 15 C 1.37957 * 120.57378 * 359.97438 * 14 13 12 16 16 C 1.38715 * 119.76802 * 0.02562 * 15 14 13 17 17 N 1.37855 * 125.30427 * 179.97438 * 9 7 2 18 18 C 1.46496 * 126.53457 * 359.97438 * 17 9 7 19 19 C 1.50707 * 109.46989 * 269.68475 * 18 17 9 20 20 N 1.33236 * 125.52555 * 269.96083 * 19 18 17 21 21 C 1.30839 * 109.82829 * 180.02562 * 20 19 18 22 22 N 1.34432 * 108.07342 * 0.02562 * 21 20 19 23 23 H 0.97005 * 126.81819 * 180.25953 * 22 21 20 24 24 N 1.30707 * 125.52314 * 90.00037 * 19 18 17 25 25 H 0.97002 * 119.99429 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.07620 * 359.95580 * 12 11 10 27 27 H 1.08006 * 119.61857 * 180.02562 * 13 12 11 28 28 H 1.08006 * 119.71337 * 179.97438 * 14 13 12 29 29 H 1.08000 * 120.11518 * 180.02562 * 15 14 13 30 30 H 1.09004 * 109.47247 * 149.68892 * 18 17 9 31 31 H 1.09000 * 109.47331 * 29.68609 * 18 17 9 32 32 H 1.08001 * 125.96093 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0937 1.6964 -1.2126 5 1 1.2749 2.7465 -0.0006 6 1 3.0938 1.6964 1.2124 7 6 2.0076 -1.2154 0.0005 8 1 3.0876 -1.2154 0.0001 9 6 1.3067 -2.4295 0.0005 10 7 -0.0123 -2.5520 -0.0037 11 6 -0.3472 -3.8491 0.0038 12 6 -1.5798 -4.5244 0.0079 13 6 -1.6066 -5.8877 0.0152 14 6 -0.4261 -6.6222 0.0193 15 6 0.7972 -5.9844 0.0154 16 6 0.8512 -4.5983 0.0080 17 7 1.8826 -3.6820 0.0005 18 6 3.3163 -3.9826 0.0000 19 6 3.8058 -4.0936 -1.4210 20 7 3.8354 -5.2120 -2.1445 21 6 4.3174 -4.9584 -3.3342 22 7 4.6112 -3.6479 -3.3945 23 1 4.9805 -3.1693 -4.1531 24 7 4.2707 -3.1084 -2.1433 25 1 -0.4849 0.8401 0.0004 26 1 -2.5035 -3.9649 0.0055 27 1 -2.5559 -6.4029 0.0179 28 1 -0.4671 -7.7014 0.0255 29 1 1.7096 -6.5622 0.0182 30 1 3.4901 -4.9254 0.5188 31 1 3.8554 -3.1833 0.5086 32 1 4.4552 -5.6765 -4.1290 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694624658.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:17 Heat of formation + Delta-G solvation = 136.497605 kcal Electronic energy + Delta-G solvation = -19788.264498 eV Core-core repulsion = 16750.396553 eV Total energy + Delta-G solvation = -3037.867945 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.09581 -42.06026 -37.80250 -35.63794 -34.98081 -33.24594 -32.31702 -30.92300 -30.39809 -27.91808 -27.55905 -23.79066 -23.09839 -22.44250 -22.06676 -20.90530 -19.32761 -18.75319 -17.83632 -17.66366 -16.58398 -16.44434 -16.08500 -15.80547 -15.63851 -14.66707 -14.50630 -14.39292 -14.30074 -13.49259 -13.24102 -13.10346 -13.00159 -12.61092 -12.30484 -12.19292 -12.00649 -11.92051 -11.19693 -11.10955 -11.07011 -10.84164 -10.75858 -9.79593 -9.01849 -8.63601 -8.49631 -6.52335 0.54325 0.61721 1.02258 1.38707 1.45810 1.52897 1.70304 1.82627 2.18689 2.35896 2.59112 3.07877 3.32399 3.57219 3.66172 3.99832 4.11138 4.30940 4.35160 4.36567 4.51458 4.74479 4.94476 5.01049 5.18507 5.22008 5.25033 5.26727 5.58996 5.70603 5.95153 5.98972 6.17760 6.26071 6.27565 6.56054 6.79842 7.08853 7.17720 8.08713 8.42723 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.009587 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.446966 B = 2919.969475 C = 4784.567555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.031 3.969 3 Si 0.996 3.004 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.454 4.454 8 H 0.098 0.902 9 C 0.397 3.603 10 N -0.586 5.586 11 C 0.055 3.945 12 C -0.153 4.153 13 C -0.113 4.113 14 C -0.166 4.166 15 C -0.095 4.095 16 C -0.016 4.016 17 N -0.532 5.532 18 C 0.220 3.780 19 C 0.200 3.800 20 N -0.566 5.566 21 C 0.271 3.729 22 N -0.476 5.476 23 H 0.457 0.543 24 N -0.325 5.325 25 H 0.283 0.717 26 H 0.102 0.898 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.433 -7.577 -5.827 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.192 4.192 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.492 4.492 8 H 0.116 0.884 9 C 0.159 3.841 10 N -0.311 5.311 11 C -0.070 4.070 12 C -0.174 4.174 13 C -0.133 4.133 14 C -0.186 4.186 15 C -0.116 4.116 16 C -0.123 4.123 17 N -0.229 5.229 18 C 0.094 3.906 19 C -0.084 4.084 20 N -0.295 5.295 21 C -0.027 4.027 22 N -0.196 5.196 23 H 0.306 0.694 24 N -0.155 5.155 25 H 0.093 0.907 26 H 0.120 0.880 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 8.733 -6.429 -5.415 12.121 hybrid contribution 0.865 0.489 -0.761 1.251 sum 9.598 -5.940 -6.175 12.866 Atomic orbital electron populations 1.70122 1.09217 1.29783 1.29936 1.26935 0.95602 1.04436 0.92190 0.85062 0.78394 0.74701 0.80320 1.18400 1.19320 1.17501 1.18826 0.94595 0.87774 1.47981 0.88447 1.20766 0.87286 0.84810 0.91194 1.71267 1.10561 1.14795 1.34524 1.20106 0.94242 0.91512 1.01133 1.20035 0.93963 0.94883 1.08530 1.20660 0.99226 0.92098 1.01353 1.20877 0.90733 1.00009 1.06968 1.20019 0.99086 0.89025 1.03485 1.19214 0.88936 0.92718 1.11447 1.45456 1.04273 1.05584 1.67566 1.19563 0.78937 1.04211 0.87843 1.24581 0.98063 0.86851 0.98888 1.70346 1.24449 1.29584 1.05136 1.27092 0.92445 0.86395 0.96808 1.48095 1.49790 1.08852 1.12847 0.69421 1.78031 1.22336 1.22164 0.92988 0.90671 0.87961 0.83829 0.83317 0.85902 0.86546 0.87443 0.70734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.66 11.85 21.89 0.26 -43.40 16 2 C 0.03 1.62 5.50 85.39 0.47 2.09 16 3 Si 1.00 38.80 29.56 68.60 2.03 40.83 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 7 C -0.45 -24.75 8.99 23.26 0.21 -24.55 16 8 H 0.10 4.90 7.09 -2.91 -0.02 4.88 16 9 C 0.40 22.89 7.41 133.69 0.99 23.89 16 10 N -0.59 -36.40 9.33 -186.51 -1.74 -38.14 16 11 C 0.06 3.08 7.21 40.14 0.29 3.37 16 12 C -0.15 -7.33 10.07 22.39 0.23 -7.10 16 13 C -0.11 -4.34 9.96 22.02 0.22 -4.12 16 14 C -0.17 -5.98 10.03 22.40 0.22 -5.75 16 15 C -0.09 -3.89 10.04 22.32 0.22 -3.67 16 16 C -0.02 -0.81 6.88 39.05 0.27 -0.54 16 17 N -0.53 -26.43 2.84 -516.98 -1.47 -27.90 16 18 C 0.22 8.72 6.53 85.64 0.56 9.28 16 19 C 0.20 7.58 7.72 138.64 1.07 8.65 16 20 N -0.57 -18.57 11.19 -191.79 -2.15 -20.72 16 21 C 0.27 5.99 13.13 180.36 2.37 8.36 16 22 N -0.48 -11.58 7.45 -60.48 -0.45 -12.03 16 23 H 0.46 7.03 8.96 -213.09 -1.91 5.11 16 24 N -0.32 -11.91 12.80 -51.33 -0.66 -12.57 16 25 H 0.28 14.56 8.29 -92.71 -0.77 13.79 16 26 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.12 3.98 8.14 -2.38 -0.02 3.96 16 31 H 0.11 4.07 7.31 -2.39 -0.02 4.05 16 32 H 0.28 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -81.55 289.90 2.21 -79.33 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.73 Total: 24.69 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 7.12 Total: 9.90 kcal Atomic # 7 Polarization: -148.55 SS G_CDS: -6.20 Total: -154.75 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -81.55 2.21 -79.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694624658.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.831 kcal (2) G-P(sol) polarization free energy of solvation -81.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds