Wall clock time and date at job start Mon Mar 30 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29199 * 125.34931 * 2 1 4 4 N 1.40273 * 107.86767 * 180.15952 * 3 2 1 5 5 C 1.46504 * 126.63387 * 179.82410 * 4 3 2 6 6 C 1.53006 * 109.46883 * 269.68308 * 5 4 3 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99801 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99846 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47212 * 90.00427 * 11 9 7 13 13 H 1.07999 * 119.99752 * 359.97438 * 12 11 9 14 14 C 1.37882 * 120.00202 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99568 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99968 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47013 * 60.00505 * 16 14 12 18 18 H 1.48503 * 109.47021 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47718 * 300.00216 * 16 14 12 20 20 C 1.35034 * 106.72780 * 359.55564 * 4 3 2 21 21 O 1.21704 * 126.37367 * 180.23506 * 20 4 3 22 22 O 1.34314 * 107.25082 * 0.26555 * 20 4 3 23 23 H 1.08997 * 109.46757 * 180.30783 * 1 2 3 24 24 H 1.08999 * 109.47063 * 300.30202 * 1 2 3 25 25 H 1.09000 * 109.47187 * 60.31059 * 1 2 3 26 26 H 1.09001 * 109.46891 * 149.68742 * 5 4 3 27 27 H 1.08993 * 109.47378 * 29.68114 * 5 4 3 28 28 H 1.09001 * 109.46801 * 300.00349 * 6 5 4 29 29 H 1.09001 * 109.46998 * 59.99945 * 6 5 4 30 30 H 1.08996 * 109.47300 * 89.99776 * 10 9 7 31 31 H 1.09010 * 109.46976 * 209.99920 * 10 9 7 32 32 H 1.09007 * 109.47283 * 329.99472 * 10 9 7 33 33 H 1.09004 * 109.46870 * 210.00004 * 11 9 7 34 34 H 1.08996 * 109.47490 * 330.00312 * 11 9 7 35 35 H 0.97001 * 119.99819 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2545 1.0538 0.0000 4 7 3.5924 0.6324 -0.0037 5 6 4.7794 1.4912 -0.0086 6 6 5.1926 1.7817 -1.4529 7 6 6.4132 2.6655 -1.4581 8 8 6.9046 3.0271 -0.4098 9 7 6.9594 3.0534 -2.6275 10 6 6.3663 2.6162 -3.8937 11 6 8.1463 3.9121 -2.6325 12 6 9.3862 3.0555 -2.6270 13 1 9.2988 1.9791 -2.6201 14 6 10.6322 3.6460 -2.6309 15 7 10.7385 4.9568 -2.6398 16 14 12.1689 2.5842 -2.6234 17 1 12.1784 1.7187 -3.8301 18 1 13.3721 3.4547 -2.6285 19 1 12.1782 1.7351 -1.4052 20 6 3.5747 -0.7178 0.0042 21 8 4.5451 -1.4523 0.0080 22 8 2.2869 -1.0992 0.0064 23 1 -0.3633 -1.0276 0.0055 24 1 -0.3633 0.5185 0.8873 25 1 -0.3633 0.5090 -0.8927 26 1 5.5954 0.9860 0.5081 27 1 4.5521 2.4281 0.4997 28 1 5.4199 0.8447 -1.9613 29 1 4.3766 2.2868 -1.9697 30 1 5.6167 3.3403 -4.2129 31 1 7.1450 2.5406 -4.6528 32 1 5.8959 1.6424 -3.7575 33 1 8.1397 4.5360 -3.5263 34 1 8.1393 4.5468 -1.7464 35 1 11.6150 5.3723 -2.6421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694843433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:58 Heat of formation + Delta-G solvation = -38.819404 kcal Electronic energy + Delta-G solvation = -20244.528370 eV Core-core repulsion = 16859.456438 eV Total energy + Delta-G solvation = -3385.071932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.58684 -39.18084 -38.13385 -36.55533 -34.91341 -33.62771 -32.66115 -31.69573 -28.82871 -27.64951 -25.97124 -24.93485 -23.18574 -22.51469 -21.71103 -18.59678 -17.95862 -17.74275 -16.73786 -16.57139 -16.29521 -15.76958 -15.40231 -15.06292 -14.51687 -14.37202 -14.21637 -13.61010 -13.33470 -13.22539 -12.74916 -12.51716 -12.27102 -12.19052 -12.16244 -11.88037 -11.61429 -11.30317 -11.17603 -10.95032 -10.86204 -10.56724 -10.16955 -9.66362 -9.24497 -8.94354 -8.43875 -7.70823 -6.05244 -4.10217 1.27985 1.45808 2.06506 2.39870 3.29955 3.33199 3.37027 3.42043 3.81892 3.96028 4.44806 4.53382 4.79408 4.83514 4.85449 5.03195 5.06086 5.14975 5.29335 5.36320 5.43207 5.61261 5.74087 5.80882 5.91093 5.97491 6.18191 6.99837 7.21055 7.39496 7.40731 7.48548 7.90644 8.21408 8.33312 8.85501 9.00885 9.54969 11.02875 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034350 B = 0.003768 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.932607 B = 7429.181452 C = 7771.666713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.233 3.767 3 N -0.264 5.264 4 N -0.452 5.452 5 C 0.172 3.828 6 C -0.160 4.160 7 C 0.512 3.488 8 O -0.542 6.542 9 N -0.599 5.599 10 C 0.082 3.918 11 C 0.245 3.755 12 C -0.529 4.529 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.601 3.399 21 O -0.480 6.480 22 O -0.276 6.276 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.443 -7.868 1.615 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.006 3.994 3 N -0.094 5.094 4 N -0.284 5.284 5 C 0.053 3.947 6 C -0.201 4.201 7 C 0.297 3.703 8 O -0.421 6.421 9 N -0.331 5.331 10 C -0.062 4.062 11 C 0.126 3.874 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.353 3.647 21 O -0.360 6.360 22 O -0.172 6.172 23 H 0.117 0.883 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.391 -7.203 2.151 22.673 hybrid contribution 1.026 -1.279 -0.237 1.657 sum -20.365 -8.482 1.915 22.143 Atomic orbital electron populations 1.20493 0.79933 1.05884 1.05861 1.26546 0.96946 0.79002 0.96864 1.77142 0.88791 1.22102 1.21372 1.50207 1.04179 1.05417 1.68600 1.21442 0.81216 0.94638 0.97431 1.22081 0.98545 1.01627 0.97872 1.19904 0.84441 0.81430 0.84517 1.90693 1.63495 1.56861 1.31006 1.48146 1.30294 1.50228 1.04425 1.21666 0.98594 0.98403 0.87526 1.19318 0.80116 0.89416 0.98528 1.21403 0.90695 0.93358 1.51334 0.92463 1.24935 0.99098 0.95051 0.94972 1.69923 1.24452 1.08733 1.50294 0.86543 0.81956 0.80142 0.78713 1.20228 1.21146 1.20102 1.19384 0.81923 0.83537 0.79866 1.91247 1.31153 1.58206 1.55435 1.85164 1.18404 1.35086 1.78595 0.88334 0.87621 0.87592 0.87104 0.87219 0.88826 0.88683 0.93583 0.90574 0.92530 0.94883 0.93688 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.01 0.38 0.20 16 2 C 0.23 2.03 8.36 -13.38 -0.11 1.92 16 3 N -0.26 -2.98 12.55 32.46 0.41 -2.57 16 4 N -0.45 -6.14 3.64 -65.25 -0.24 -6.38 16 5 C 0.17 2.48 5.71 -4.04 -0.02 2.45 16 6 C -0.16 -2.39 4.58 -27.88 -0.13 -2.51 16 7 C 0.51 10.44 7.67 -10.99 -0.08 10.35 16 8 O -0.54 -13.21 15.56 5.56 0.09 -13.13 16 9 N -0.60 -12.69 2.86 -182.96 -0.52 -13.21 16 10 C 0.08 1.30 10.24 59.85 0.61 1.92 16 11 C 0.25 6.43 5.16 -5.20 -0.03 6.40 16 12 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 16 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.60 8.91 9.26 54.17 0.50 9.41 16 21 O -0.48 -8.69 17.93 -19.01 -0.34 -9.03 16 22 O -0.28 -3.26 10.71 -19.82 -0.21 -3.47 16 23 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 24 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 25 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.11 1.73 8.08 -51.93 -0.42 1.31 16 27 H 0.11 1.52 8.10 -51.93 -0.42 1.10 16 28 H 0.09 1.36 7.40 -51.93 -0.38 0.98 16 29 H 0.09 1.22 8.11 -51.93 -0.42 0.79 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.25 8.07 -51.92 -0.42 0.83 16 32 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 33 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -36.12 314.11 -4.11 -40.23 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -4.44 Total: -4.61 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 0.70 Total: 16.32 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.38 Total: -48.16 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.47 Total: -25.63 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.12 -4.11 -40.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694843433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.409 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds