Wall clock time and date at job start Mon Mar 30 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29199 * 125.34931 * 2 1 4 4 N 1.40273 * 107.86767 * 180.15952 * 3 2 1 5 5 C 1.46504 * 126.63387 * 179.82410 * 4 3 2 6 6 C 1.53006 * 109.46883 * 269.68308 * 5 4 3 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99801 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99846 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47212 * 90.00427 * 11 9 7 13 13 H 1.07999 * 119.99752 * 359.97438 * 12 11 9 14 14 C 1.37882 * 120.00202 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99568 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99968 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47013 * 60.00505 * 16 14 12 18 18 H 1.48503 * 109.47021 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47718 * 300.00216 * 16 14 12 20 20 C 1.35034 * 106.72780 * 359.55564 * 4 3 2 21 21 O 1.21704 * 126.37367 * 180.23506 * 20 4 3 22 22 O 1.34314 * 107.25082 * 0.26555 * 20 4 3 23 23 H 1.08997 * 109.46757 * 180.30783 * 1 2 3 24 24 H 1.08999 * 109.47063 * 300.30202 * 1 2 3 25 25 H 1.09000 * 109.47187 * 60.31059 * 1 2 3 26 26 H 1.09001 * 109.46891 * 149.68742 * 5 4 3 27 27 H 1.08993 * 109.47378 * 29.68114 * 5 4 3 28 28 H 1.09001 * 109.46801 * 300.00349 * 6 5 4 29 29 H 1.09001 * 109.46998 * 59.99945 * 6 5 4 30 30 H 1.08996 * 109.47300 * 89.99776 * 10 9 7 31 31 H 1.09010 * 109.46976 * 209.99920 * 10 9 7 32 32 H 1.09007 * 109.47283 * 329.99472 * 10 9 7 33 33 H 1.09004 * 109.46870 * 210.00004 * 11 9 7 34 34 H 1.08996 * 109.47490 * 330.00312 * 11 9 7 35 35 H 0.97001 * 119.99819 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2545 1.0538 0.0000 4 7 3.5924 0.6324 -0.0037 5 6 4.7794 1.4912 -0.0086 6 6 5.1926 1.7817 -1.4529 7 6 6.4132 2.6655 -1.4581 8 8 6.9046 3.0271 -0.4098 9 7 6.9594 3.0534 -2.6275 10 6 6.3663 2.6162 -3.8937 11 6 8.1463 3.9121 -2.6325 12 6 9.3862 3.0555 -2.6270 13 1 9.2988 1.9791 -2.6201 14 6 10.6322 3.6460 -2.6309 15 7 10.7385 4.9568 -2.6398 16 14 12.1689 2.5842 -2.6234 17 1 12.1784 1.7187 -3.8301 18 1 13.3721 3.4547 -2.6285 19 1 12.1782 1.7351 -1.4052 20 6 3.5747 -0.7178 0.0042 21 8 4.5451 -1.4523 0.0080 22 8 2.2869 -1.0992 0.0064 23 1 -0.3633 -1.0276 0.0055 24 1 -0.3633 0.5185 0.8873 25 1 -0.3633 0.5090 -0.8927 26 1 5.5954 0.9860 0.5081 27 1 4.5521 2.4281 0.4997 28 1 5.4199 0.8447 -1.9613 29 1 4.3766 2.2868 -1.9697 30 1 5.6167 3.3403 -4.2129 31 1 7.1450 2.5406 -4.6528 32 1 5.8959 1.6424 -3.7575 33 1 8.1397 4.5360 -3.5263 34 1 8.1393 4.5468 -1.7464 35 1 11.6150 5.3723 -2.6421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694843433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:58 Heat of formation + Delta-G solvation = -66.983455 kcal Electronic energy + Delta-G solvation = -20245.749655 eV Core-core repulsion = 16859.456438 eV Total energy + Delta-G solvation = -3386.293217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.54121 -40.80129 -39.30883 -37.61942 -36.65883 -34.84786 -34.47595 -32.68597 -30.15127 -29.02964 -27.41148 -26.37176 -24.66614 -23.70061 -22.83811 -20.13726 -19.06901 -18.77624 -18.70577 -17.97774 -17.47555 -17.15641 -16.94468 -16.52857 -16.18435 -15.34405 -15.04592 -14.93281 -14.62744 -14.12864 -14.02286 -13.73036 -13.51936 -13.47166 -13.43268 -13.17671 -13.02321 -12.84397 -12.65265 -12.49913 -12.42884 -12.21570 -12.04337 -11.74409 -10.77885 -10.65934 -10.11974 -9.48165 -8.24697 -6.39436 0.40657 0.54909 0.93956 1.35456 1.39658 1.46828 1.62991 1.71925 2.28958 2.43060 3.03038 3.05086 3.55193 3.68576 3.76946 3.97992 4.22093 4.27457 4.41001 4.54039 4.61972 4.68911 4.71843 4.80442 4.84705 4.92152 4.99624 5.20221 5.21134 5.52248 5.79138 6.03522 6.18368 6.41065 6.63896 6.72186 7.23477 7.38698 8.82261 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034350 B = 0.003768 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.932607 B = 7429.181452 C = 7771.666713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.254 3.746 3 N -0.288 5.288 4 N -0.453 5.453 5 C 0.177 3.823 6 C -0.137 4.137 7 C 0.504 3.496 8 O -0.592 6.592 9 N -0.608 5.608 10 C 0.077 3.923 11 C 0.259 3.741 12 C -0.548 4.548 13 H 0.051 0.949 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.279 1.279 20 C 0.597 3.403 21 O -0.524 6.524 22 O -0.274 6.274 23 H 0.119 0.881 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.002 0.998 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.729 -9.079 0.749 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.029 3.971 3 N -0.117 5.117 4 N -0.284 5.284 5 C 0.058 3.942 6 C -0.178 4.178 7 C 0.292 3.708 8 O -0.474 6.474 9 N -0.339 5.339 10 C -0.065 4.065 11 C 0.138 3.862 12 C -0.586 4.586 13 H 0.070 0.930 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.205 1.205 20 C 0.349 3.651 21 O -0.408 6.408 22 O -0.171 6.171 23 H 0.137 0.863 24 H 0.145 0.855 25 H 0.147 0.853 26 H 0.109 0.891 27 H 0.131 0.869 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.021 0.979 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.748 -8.415 1.249 25.226 hybrid contribution 1.548 -0.884 0.047 1.783 sum -22.201 -9.299 1.296 24.104 Atomic orbital electron populations 1.20969 0.75427 1.07897 1.07825 1.27933 0.98569 0.77360 0.93250 1.77225 0.87367 1.22820 1.24324 1.50047 1.05131 1.04786 1.68398 1.21210 0.81411 0.94623 0.97004 1.21917 0.96447 1.00770 0.98674 1.20801 0.85440 0.81156 0.83410 1.90663 1.65250 1.58696 1.32753 1.48167 1.29176 1.49685 1.06867 1.21953 0.98892 1.00838 0.84798 1.18787 0.81891 0.89469 0.96064 1.21694 0.92081 0.93301 1.51567 0.93044 1.25830 1.02408 0.96366 0.94356 1.70033 1.25436 1.10338 1.50807 0.85496 0.78052 0.78510 0.78933 1.18559 1.20102 1.20469 1.19441 0.82379 0.83619 0.79647 1.91204 1.32942 1.59225 1.57412 1.85183 1.17442 1.36176 1.78270 0.86290 0.85500 0.85306 0.89104 0.86850 0.87838 0.85532 0.90570 0.91397 0.89409 0.95517 0.97937 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.09 10.51 71.24 0.75 0.66 16 2 C 0.25 3.68 8.36 88.50 0.74 4.42 16 3 N -0.29 -5.84 12.55 -166.07 -2.08 -7.93 16 4 N -0.45 -11.83 3.64 -590.56 -2.15 -13.99 16 5 C 0.18 5.08 5.71 86.38 0.49 5.58 16 6 C -0.14 -3.91 4.58 29.85 0.14 -3.78 16 7 C 0.50 20.72 7.67 87.66 0.67 21.39 16 8 O -0.59 -30.01 15.56 -3.04 -0.05 -30.06 16 9 N -0.61 -25.83 2.86 -851.13 -2.43 -28.26 16 10 C 0.08 2.30 10.24 127.77 1.31 3.61 16 11 C 0.26 14.05 5.16 85.63 0.44 14.49 16 12 C -0.55 -32.09 9.39 25.60 0.24 -31.85 16 13 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 14 C 0.01 0.56 5.46 84.66 0.46 1.03 16 15 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 16 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 20 C 0.60 17.32 9.26 129.75 1.20 18.52 16 21 O -0.52 -19.22 17.93 18.77 0.34 -18.88 16 22 O -0.27 -5.97 10.71 15.84 0.17 -5.80 16 23 H 0.12 -0.23 8.14 -2.39 -0.02 -0.24 16 24 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.09 2.96 8.08 -2.39 -0.02 2.94 16 27 H 0.11 3.14 8.10 -2.39 -0.02 3.12 16 28 H 0.10 2.81 7.40 -2.39 -0.02 2.79 16 29 H 0.13 2.84 8.11 -2.39 -0.02 2.82 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 2.14 8.07 -2.38 -0.02 2.12 16 32 H 0.09 2.07 6.44 -2.38 -0.02 2.05 16 33 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 34 H 0.00 0.16 7.42 -2.39 -0.02 0.14 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -82.23 314.11 3.65 -78.58 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.10 Total: 0.69 kcal Atomic # 6 Polarization: 27.63 SS G_CDS: 6.44 Total: 34.07 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -6.38 Total: -106.29 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: 0.46 Total: -54.74 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -82.23 3.65 -78.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694843433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.593 kcal (2) G-P(sol) polarization free energy of solvation -82.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds