Wall clock time and date at job start Mon Mar 30 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36885 * 126.39965 * 2 1 4 4 Cl 1.73604 * 126.59574 * 0.02562 * 3 2 1 5 5 C 1.34796 * 106.80433 * 180.22176 * 3 2 1 6 6 N 1.34171 * 108.01181 * 359.77905 * 5 3 2 7 7 C 1.30474 * 109.27010 * 359.97438 * 6 5 3 8 8 C 1.50699 * 125.64311 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.47567 * 264.22950 * 8 7 6 10 10 C 1.47843 * 111.00340 * 54.49075 * 9 8 7 11 11 C 1.54902 * 104.79583 * 146.36654 * 10 9 8 12 12 C 1.55139 * 101.65332 * 322.92884 * 11 10 9 13 13 H 1.09000 * 110.86030 * 277.20555 * 12 11 10 14 14 C 1.50700 * 110.70588 * 154.03410 * 12 11 10 15 15 H 1.08001 * 120.00632 * 252.06539 * 14 12 11 16 16 C 1.37879 * 119.99712 * 72.06767 * 14 12 11 17 17 N 1.31520 * 120.00305 * 6.65362 * 16 14 12 18 18 Si 1.86798 * 119.99946 * 186.65720 * 16 14 12 19 19 H 1.48500 * 109.47129 * 84.98327 * 18 16 14 20 20 H 1.48499 * 109.47267 * 324.98123 * 18 16 14 21 21 H 1.48505 * 109.47364 * 204.97827 * 18 16 14 22 22 C 1.47443 * 111.00082 * 175.34025 * 9 8 7 23 23 H 1.09006 * 109.47277 * 274.23297 * 1 2 3 24 24 H 1.08996 * 109.47562 * 34.23215 * 1 2 3 25 25 H 1.08995 * 109.47272 * 154.23598 * 1 2 3 26 26 H 1.07995 * 125.99148 * 179.81061 * 5 3 2 27 27 H 1.08996 * 109.46740 * 144.22324 * 8 7 6 28 28 H 1.09007 * 109.46963 * 24.23153 * 8 7 6 29 29 H 1.09001 * 110.37469 * 265.19705 * 10 9 8 30 30 H 1.09000 * 110.37389 * 27.53772 * 10 9 8 31 31 H 1.09007 * 110.99180 * 204.83914 * 11 10 9 32 32 H 1.08997 * 110.99403 * 81.02383 * 11 10 9 33 33 H 0.96996 * 120.00042 * 180.02562 * 17 16 14 34 34 H 1.08998 * 109.89181 * 117.33121 * 22 9 8 35 35 H 1.08997 * 110.02050 * 356.21768 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 17 1.7696 2.7619 0.0006 5 6 3.5472 0.6497 -0.0050 6 7 3.5101 -0.6915 -0.0030 7 6 2.2670 -1.0879 0.0035 8 6 1.8025 -2.5215 0.0071 9 7 1.5121 -2.9457 -1.3689 10 6 2.6763 -2.7164 -2.2509 11 6 2.6290 -3.8752 -3.2777 12 6 2.1425 -5.0554 -2.3961 13 1 2.9754 -5.5055 -1.8560 14 6 1.4321 -6.0880 -3.2328 15 1 0.3601 -6.1973 -3.1607 16 6 2.1509 -6.8934 -4.0906 17 7 3.4655 -6.8528 -4.0844 18 14 1.2576 -8.0423 -5.2617 19 1 0.8870 -7.3022 -6.4946 20 1 0.0294 -8.5597 -4.6068 21 1 2.1464 -9.1784 -5.6148 22 6 1.1608 -4.3768 -1.4177 23 1 -0.3634 0.0759 1.0249 24 1 -0.3634 0.8496 -0.5781 25 1 -0.3633 -0.9255 -0.4467 26 1 4.4381 1.2601 -0.0093 27 1 0.9004 -2.6094 0.6125 28 1 2.5841 -3.1556 0.4256 29 1 2.5848 -1.7559 -2.7582 30 1 3.6016 -2.7563 -1.6761 31 1 3.6195 -4.0756 -3.6863 32 1 1.9157 -3.6626 -4.0739 33 1 3.9711 -7.4191 -4.6881 34 1 0.1383 -4.4956 -1.7762 35 1 1.2598 -4.8193 -0.4265 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700102946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:41 Heat of formation + Delta-G solvation = 41.242258 kcal Electronic energy + Delta-G solvation = -18404.429610 eV Core-core repulsion = 15463.538577 eV Total energy + Delta-G solvation = -2940.891033 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.23833 -39.68118 -37.78999 -35.27079 -35.06537 -33.08022 -30.27912 -30.02393 -28.07974 -26.95492 -25.64979 -22.58831 -22.08959 -21.38144 -20.75788 -18.58624 -18.28210 -17.27389 -16.66979 -16.38820 -16.20208 -15.80552 -15.05776 -14.72815 -14.41501 -14.23256 -13.97650 -13.82898 -13.51140 -13.12244 -13.02214 -12.90919 -12.67387 -12.55872 -12.48636 -12.37893 -12.05100 -11.56856 -11.22593 -11.08609 -10.93055 -10.68019 -10.48122 -9.45611 -9.21132 -8.13164 -6.21357 0.54690 0.74267 1.43576 1.44794 1.53863 1.87466 1.96340 2.44732 3.11128 3.18984 3.39112 3.82064 3.88397 4.12664 4.26826 4.35255 4.38811 4.51349 4.54064 4.57805 4.62380 4.69323 4.85288 5.04083 5.07817 5.24232 5.30603 5.46954 5.58732 5.65130 5.86651 5.93377 6.04192 6.16368 6.35187 6.89080 6.90592 7.45877 8.97234 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.044220 B = 0.003877 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.050386 B = 7220.577241 C = 7373.187643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.440 5.440 3 C 0.009 3.991 4 Cl 0.008 6.992 5 C -0.011 4.011 6 N -0.511 5.511 7 C 0.230 3.770 8 C 0.132 3.868 9 N -0.522 5.522 10 C 0.064 3.936 11 C -0.103 4.103 12 C 0.025 3.975 13 H 0.004 0.996 14 C -0.525 4.525 15 H 0.062 0.938 16 C 0.012 3.988 17 N -0.924 5.924 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.263 1.263 21 H -0.288 1.288 22 C 0.061 3.939 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.194 0.806 27 H 0.119 0.881 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.260 0.740 34 H 0.076 0.924 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 16.653 9.807 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.123 5.123 3 C -0.133 4.133 4 Cl 0.036 6.964 5 C -0.162 4.162 6 N -0.231 5.231 7 C -0.033 4.033 8 C 0.003 3.997 9 N -0.247 5.247 10 C -0.064 4.064 11 C -0.142 4.142 12 C 0.006 3.994 13 H 0.022 0.978 14 C -0.564 4.564 15 H 0.080 0.920 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.780 3.220 19 H -0.202 1.202 20 H -0.187 1.187 21 H -0.214 1.214 22 C -0.066 4.066 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.211 0.789 27 H 0.137 0.863 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.610 16.508 9.578 20.198 hybrid contribution 0.077 -0.427 -0.594 0.736 sum -6.533 16.081 8.984 19.544 Atomic orbital electron populations 1.22450 0.73779 1.06506 1.05379 1.45243 1.09272 1.04624 1.53202 1.21866 0.91207 0.83219 1.16999 1.98371 1.91582 1.08952 1.97466 1.22511 0.95720 0.90683 1.07251 1.70406 1.19755 1.12034 1.20927 1.23002 0.85337 0.90666 1.04287 1.20728 1.01576 0.85604 0.91795 1.63803 1.34951 1.19284 1.06659 1.22772 0.91611 0.97728 0.94314 1.22505 0.99079 0.95183 0.97453 1.19798 0.93823 0.92760 0.93048 0.97790 1.21439 0.93880 1.18048 1.22990 0.91999 1.25793 0.95402 0.98530 0.98971 1.70104 1.06686 1.41041 1.38525 0.85623 0.78669 0.78261 0.79443 1.20186 1.18742 1.21374 1.22801 1.00042 0.85051 0.98698 0.88043 0.88540 0.87659 0.78878 0.86279 0.92214 0.92287 0.94394 0.94541 0.93488 0.93118 0.90581 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 10.76 127.77 1.37 2.31 16 2 N -0.44 -10.45 3.16 -526.51 -1.66 -12.11 16 3 C 0.01 0.21 7.49 83.11 0.62 0.83 16 4 Cl 0.01 0.15 29.04 -2.72 -0.08 0.07 16 5 C -0.01 -0.30 11.86 83.55 0.99 0.69 16 6 N -0.51 -16.55 10.90 -187.95 -2.05 -18.60 16 7 C 0.23 6.66 6.32 138.10 0.87 7.54 16 8 C 0.13 3.78 4.58 85.56 0.39 4.17 16 9 N -0.52 -18.04 5.27 -890.12 -4.69 -22.73 16 10 C 0.06 2.53 5.68 86.77 0.49 3.02 16 11 C -0.10 -4.92 6.35 31.98 0.20 -4.72 16 12 C 0.03 1.25 2.68 -10.36 -0.03 1.22 16 13 H 0.00 0.22 8.07 -2.39 -0.02 0.20 16 14 C -0.53 -28.38 8.42 25.60 0.22 -28.16 16 15 H 0.06 3.21 7.51 -2.91 -0.02 3.19 16 16 C 0.01 0.65 5.38 84.65 0.46 1.10 16 17 N -0.92 -54.51 13.16 21.45 0.28 -54.23 16 18 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 C 0.06 2.37 6.47 86.65 0.56 2.93 16 23 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.10 1.30 8.05 -2.39 -0.02 1.28 16 25 H 0.10 1.71 7.61 -2.39 -0.02 1.70 16 26 H 0.19 4.17 8.06 -2.91 -0.02 4.14 16 27 H 0.12 2.60 7.92 -2.39 -0.02 2.58 16 28 H 0.06 1.86 8.11 -2.38 -0.02 1.84 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.04 1.59 7.45 -2.39 -0.02 1.57 16 31 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 33 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.08 2.92 7.61 -2.39 -0.02 2.91 16 35 H 0.05 1.93 7.57 -2.39 -0.02 1.92 16 Total: -1.00 -64.17 307.10 1.06 -63.11 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.08 Total: 8.21 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 6.15 Total: -9.07 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -8.12 Total: -107.66 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -64.17 1.06 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700102946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.351 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds