Wall clock time and date at job start Mon Mar 30 2020 04:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37102 * 119.99759 * 2 1 4 4 H 1.08001 * 119.99637 * 142.83093 * 3 2 1 5 5 C 1.38946 * 120.00207 * 322.82606 * 3 2 1 6 6 N 1.31409 * 119.99927 * 158.41056 * 5 3 2 7 7 Si 1.86807 * 120.00008 * 338.41119 * 5 3 2 8 8 H 1.48490 * 109.47003 * 95.72229 * 7 5 3 9 9 H 1.48499 * 109.46862 * 215.71999 * 7 5 3 10 10 H 1.48495 * 109.47117 * 335.71769 * 7 5 3 11 11 C 1.34773 * 119.99722 * 180.02562 * 2 1 3 12 12 O 1.21302 * 119.99599 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00248 * 359.97438 * 11 2 1 14 14 C 1.53005 * 109.47199 * 180.02562 * 13 11 2 15 15 C 1.50691 * 109.47170 * 180.02562 * 14 13 11 16 16 C 1.38261 * 119.96806 * 270.02093 * 15 14 13 17 17 C 1.38213 * 120.07454 * 179.97438 * 16 15 14 18 18 C 1.38413 * 119.99599 * 0.02562 * 17 16 15 19 19 F 1.35106 * 120.03104 * 180.27683 * 18 17 16 20 20 C 1.38649 * 119.93360 * 359.97438 * 18 17 16 21 21 F 1.35093 * 120.03352 * 180.02562 * 20 18 17 22 22 C 1.38217 * 119.96614 * 90.00387 * 15 14 13 23 23 H 1.09001 * 109.46650 * 265.13662 * 1 2 3 24 24 H 1.09002 * 109.46706 * 25.13311 * 1 2 3 25 25 H 1.09001 * 109.46648 * 145.13245 * 1 2 3 26 26 H 0.97005 * 119.99967 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.46974 * 60.01182 * 13 11 2 28 28 H 1.08989 * 109.47283 * 300.00408 * 13 11 2 29 29 H 1.09006 * 109.46750 * 60.00367 * 14 13 11 30 30 H 1.09002 * 109.47243 * 300.00583 * 14 13 11 31 31 H 1.08001 * 119.95843 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.00191 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.99549 * 0.04363 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.0660 1.2823 0.5651 5 6 1.6675 2.2684 -0.7271 6 7 2.0433 3.4890 -0.4175 7 14 0.4840 1.9867 -2.1446 8 1 -0.9112 2.1587 -1.6662 9 1 0.7617 2.9683 -3.2238 10 1 0.6607 0.6094 -2.6708 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 6 1.6262 -4.9403 -0.0012 16 6 1.2801 -5.5385 1.1963 17 6 0.5885 -6.7352 1.1983 18 6 0.2422 -7.3362 0.0005 19 9 -0.4387 -8.5032 0.0017 20 6 0.5892 -6.7364 -1.2003 21 9 0.2518 -7.3210 -2.3705 22 6 1.2815 -5.5378 -1.1989 23 1 -0.3633 -0.0871 1.0240 24 1 -0.3633 0.9304 -0.4365 25 1 -0.3633 -0.8432 -0.5875 26 1 1.7064 4.2437 -0.9253 27 1 0.7586 -2.5299 -0.8904 28 1 0.7591 -2.5302 0.8896 29 1 3.0063 -3.5775 0.8896 30 1 3.0064 -3.5775 -0.8905 31 1 1.5504 -5.0701 2.1312 32 1 0.3184 -7.2012 2.1343 33 1 1.5528 -5.0698 -2.1336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701206096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:34 Heat of formation + Delta-G solvation = -95.121906 kcal Electronic energy + Delta-G solvation = -19678.488283 eV Core-core repulsion = 16147.594625 eV Total energy + Delta-G solvation = -3530.893658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.61857 -48.69640 -39.52891 -38.57625 -34.97250 -33.60641 -32.06102 -31.03271 -29.43951 -26.51202 -25.64402 -23.70539 -23.35936 -21.39373 -18.73962 -18.09256 -17.33808 -17.16030 -17.05065 -16.46068 -16.05932 -15.58427 -15.11615 -15.02986 -14.67141 -14.36719 -14.06249 -13.88106 -13.42869 -12.92881 -12.77768 -12.65101 -12.32392 -12.05421 -11.88396 -11.68602 -11.48037 -11.23666 -10.89242 -10.70469 -10.39424 -9.95707 -9.27963 -9.11139 -8.83650 -8.49408 -7.77809 -6.42590 -3.99836 0.71611 0.79421 3.00102 3.14839 3.19320 3.22986 3.59374 3.69336 4.10986 4.13916 4.29418 4.38264 4.62259 4.81998 4.93559 4.97117 5.31431 5.34177 5.47394 5.57911 5.63392 5.69958 5.78918 5.83090 5.92836 5.96006 6.12313 6.25436 6.32613 6.40109 6.57234 7.51067 8.25276 8.47157 8.93388 9.28806 9.73277 10.69595 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.003975 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.571897 B = 7041.512085 C = 7381.851136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.471 5.471 3 C -0.319 4.319 4 H 0.105 0.895 5 C 0.059 3.941 6 N -0.864 5.864 7 Si 0.881 3.119 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.265 1.265 11 C 0.461 3.539 12 O -0.567 6.567 13 C -0.131 4.131 14 C -0.066 4.066 15 C -0.051 4.051 16 C -0.098 4.098 17 C -0.123 4.123 18 C 0.054 3.946 19 F -0.133 7.133 20 C 0.069 3.931 21 F -0.131 7.131 22 C -0.125 4.125 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.274 0.726 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 -18.240 1.303 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.193 5.193 3 C -0.446 4.446 4 H 0.123 0.877 5 C -0.147 4.147 6 N -0.500 5.500 7 Si 0.708 3.292 8 H -0.203 1.203 9 H -0.214 1.214 10 H -0.189 1.189 11 C 0.250 3.750 12 O -0.449 6.449 13 C -0.172 4.172 14 C -0.103 4.103 15 C -0.052 4.052 16 C -0.116 4.116 17 C -0.142 4.142 18 C 0.034 3.966 19 F -0.112 7.112 20 C 0.049 3.951 21 F -0.110 7.110 22 C -0.143 4.143 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.915 -18.070 1.222 19.053 hybrid contribution -1.077 -0.270 -1.052 1.529 sum -6.992 -18.340 0.170 19.628 Atomic orbital electron populations 1.22006 0.83444 1.01580 1.01003 1.43701 1.04022 1.05820 1.65745 1.19067 1.10169 0.85529 1.29805 0.87698 1.25371 0.97453 0.94774 0.97100 1.69756 1.43883 0.98105 1.38304 0.86917 0.80196 0.78981 0.83084 1.20296 1.21436 1.18949 1.20223 0.88184 0.84730 0.81898 1.90562 1.13873 1.87043 1.53456 1.21624 0.98799 0.93413 1.03323 1.20398 0.96615 0.88040 1.05285 1.20055 0.96547 0.96791 0.91796 1.21098 0.97404 0.94270 0.98818 1.21081 0.99965 0.96604 0.96511 1.17691 1.00214 0.85110 0.93611 1.91514 1.77403 1.44985 1.97295 1.17690 1.02551 0.94566 0.80312 1.91522 1.90568 1.83606 1.45273 1.21085 0.99217 0.93630 1.00403 0.92966 0.91665 0.92702 0.91571 0.90004 0.89920 0.89437 0.89649 0.83963 0.83759 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.19 8.78 59.85 0.53 1.72 16 2 N -0.47 -11.08 2.59 -122.18 -0.32 -11.39 16 3 C -0.32 -8.93 9.37 -14.93 -0.14 -9.07 16 4 H 0.11 3.31 7.90 -52.49 -0.41 2.89 16 5 C 0.06 1.61 5.29 -17.47 -0.09 1.52 16 6 N -0.86 -24.81 13.96 55.50 0.77 -24.04 16 7 Si 0.88 20.26 24.96 -169.99 -4.24 16.01 16 8 H -0.28 -5.88 6.69 56.52 0.38 -5.50 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 C 0.46 10.09 7.63 -10.99 -0.08 10.00 16 12 O -0.57 -14.56 15.85 5.54 0.09 -14.47 16 13 C -0.13 -1.98 4.30 -27.88 -0.12 -2.10 16 14 C -0.07 -0.87 4.63 -27.89 -0.13 -1.00 16 15 C -0.05 -0.56 5.13 -104.63 -0.54 -1.10 16 16 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 17 C -0.12 -1.12 10.02 -39.53 -0.40 -1.51 16 18 C 0.05 0.60 7.31 -39.37 -0.29 0.31 16 19 F -0.13 -1.59 17.18 2.25 0.04 -1.56 16 20 C 0.07 0.81 7.31 -39.37 -0.29 0.52 16 21 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 22 C -0.12 -1.37 9.68 -39.53 -0.38 -1.75 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.32 3.42 -51.93 -0.18 1.14 16 25 H 0.05 0.85 6.64 -51.93 -0.34 0.50 16 26 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.08 1.13 7.41 -51.93 -0.38 0.74 16 28 H 0.08 1.07 8.11 -51.94 -0.42 0.65 16 29 H 0.09 1.18 8.04 -51.93 -0.42 0.76 16 30 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -31.79 291.97 -4.96 -36.75 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.43 Total: -0.32 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.31 Total: -3.76 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.46 Total: -35.43 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.24 Total: 16.01 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.79 -4.96 -36.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701206096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.369 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds