Wall clock time and date at job start Mon Mar 30 2020 04:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37102 * 119.99759 * 2 1 4 4 H 1.08001 * 119.99637 * 142.83093 * 3 2 1 5 5 C 1.38946 * 120.00207 * 322.82606 * 3 2 1 6 6 N 1.31409 * 119.99927 * 158.41056 * 5 3 2 7 7 Si 1.86807 * 120.00008 * 338.41119 * 5 3 2 8 8 H 1.48490 * 109.47003 * 95.72229 * 7 5 3 9 9 H 1.48499 * 109.46862 * 215.71999 * 7 5 3 10 10 H 1.48495 * 109.47117 * 335.71769 * 7 5 3 11 11 C 1.34773 * 119.99722 * 180.02562 * 2 1 3 12 12 O 1.21302 * 119.99599 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00248 * 359.97438 * 11 2 1 14 14 C 1.53005 * 109.47199 * 180.02562 * 13 11 2 15 15 C 1.50691 * 109.47170 * 180.02562 * 14 13 11 16 16 C 1.38261 * 119.96806 * 270.02093 * 15 14 13 17 17 C 1.38213 * 120.07454 * 179.97438 * 16 15 14 18 18 C 1.38413 * 119.99599 * 0.02562 * 17 16 15 19 19 F 1.35106 * 120.03104 * 180.27683 * 18 17 16 20 20 C 1.38649 * 119.93360 * 359.97438 * 18 17 16 21 21 F 1.35093 * 120.03352 * 180.02562 * 20 18 17 22 22 C 1.38217 * 119.96614 * 90.00387 * 15 14 13 23 23 H 1.09001 * 109.46650 * 265.13662 * 1 2 3 24 24 H 1.09002 * 109.46706 * 25.13311 * 1 2 3 25 25 H 1.09001 * 109.46648 * 145.13245 * 1 2 3 26 26 H 0.97005 * 119.99967 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.46974 * 60.01182 * 13 11 2 28 28 H 1.08989 * 109.47283 * 300.00408 * 13 11 2 29 29 H 1.09006 * 109.46750 * 60.00367 * 14 13 11 30 30 H 1.09002 * 109.47243 * 300.00583 * 14 13 11 31 31 H 1.08001 * 119.95843 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.00191 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.99549 * 0.04363 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.0660 1.2823 0.5651 5 6 1.6675 2.2684 -0.7271 6 7 2.0433 3.4890 -0.4175 7 14 0.4840 1.9867 -2.1446 8 1 -0.9112 2.1587 -1.6662 9 1 0.7617 2.9683 -3.2238 10 1 0.6607 0.6094 -2.6708 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 6 1.6262 -4.9403 -0.0012 16 6 1.2801 -5.5385 1.1963 17 6 0.5885 -6.7352 1.1983 18 6 0.2422 -7.3362 0.0005 19 9 -0.4387 -8.5032 0.0017 20 6 0.5892 -6.7364 -1.2003 21 9 0.2518 -7.3210 -2.3705 22 6 1.2815 -5.5378 -1.1989 23 1 -0.3633 -0.0871 1.0240 24 1 -0.3633 0.9304 -0.4365 25 1 -0.3633 -0.8432 -0.5875 26 1 1.7064 4.2437 -0.9253 27 1 0.7586 -2.5299 -0.8904 28 1 0.7591 -2.5302 0.8896 29 1 3.0063 -3.5775 0.8896 30 1 3.0064 -3.5775 -0.8905 31 1 1.5504 -5.0701 2.1312 32 1 0.3184 -7.2012 2.1343 33 1 1.5528 -5.0698 -2.1336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701206096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:34 Heat of formation + Delta-G solvation = -114.985939 kcal Electronic energy + Delta-G solvation = -19679.349652 eV Core-core repulsion = 16147.594625 eV Total energy + Delta-G solvation = -3531.755027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.49366 -49.57840 -40.73024 -39.92011 -36.76470 -34.76803 -34.04941 -31.81993 -30.54003 -28.14824 -27.18125 -25.04966 -24.18392 -22.38116 -20.42530 -19.03610 -18.93518 -18.18612 -18.12409 -17.65623 -17.34289 -17.18904 -16.46250 -16.00988 -15.61088 -15.52784 -15.31061 -14.91135 -14.69152 -14.52401 -14.17790 -14.04478 -13.67162 -13.42765 -13.31739 -12.75589 -12.63888 -12.52490 -12.18807 -12.18111 -11.87908 -11.79675 -11.04550 -10.37804 -10.04288 -9.67874 -9.60460 -8.50691 -6.13187 -0.11001 0.03312 1.21098 1.34306 1.46157 1.99733 2.18688 2.34588 2.75960 2.83012 2.98114 3.31413 3.55002 3.68323 4.00519 4.07819 4.16574 4.25848 4.34129 4.37338 4.59756 4.75050 4.81225 4.84751 4.86876 4.88954 5.03761 5.08494 5.28229 5.49657 5.54676 5.77221 6.05147 6.57839 6.96561 7.33804 7.91100 8.66916 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.003975 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.571897 B = 7041.512085 C = 7381.851136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.488 5.488 3 C -0.338 4.338 4 H 0.043 0.957 5 C 0.009 3.991 6 N -0.914 5.914 7 Si 0.955 3.045 8 H -0.240 1.240 9 H -0.293 1.293 10 H -0.256 1.256 11 C 0.454 3.546 12 O -0.618 6.618 13 C -0.118 4.118 14 C -0.059 4.059 15 C -0.053 4.053 16 C -0.087 4.087 17 C -0.112 4.112 18 C 0.044 3.956 19 F -0.141 7.141 20 C 0.051 3.949 21 F -0.142 7.142 22 C -0.124 4.124 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.098 0.902 26 H 0.279 0.721 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 -20.183 1.234 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.210 5.210 3 C -0.466 4.466 4 H 0.061 0.939 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.778 3.222 8 H -0.165 1.165 9 H -0.221 1.221 10 H -0.180 1.180 11 C 0.245 3.755 12 O -0.503 6.503 13 C -0.157 4.157 14 C -0.096 4.096 15 C -0.054 4.054 16 C -0.105 4.105 17 C -0.130 4.130 18 C 0.024 3.976 19 F -0.120 7.120 20 C 0.031 3.969 21 F -0.121 7.121 22 C -0.143 4.143 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.631 -20.033 1.172 21.845 hybrid contribution -0.134 0.301 -0.924 0.981 sum -8.765 -19.732 0.248 21.592 Atomic orbital electron populations 1.22254 0.80122 1.02696 1.03473 1.43877 1.06086 1.04735 1.66312 1.18691 1.09341 0.88296 1.30305 0.93929 1.26202 0.99905 0.93853 0.99338 1.69881 1.46245 0.99301 1.39760 0.85749 0.79249 0.78909 0.78255 1.16467 1.22054 1.17951 1.21459 0.88036 0.86503 0.79478 1.90534 1.16609 1.88108 1.55034 1.21617 0.98788 0.89392 1.05929 1.20242 0.96267 0.88676 1.04447 1.19799 0.97084 0.95999 0.92494 1.21350 0.96135 0.93970 0.99067 1.21354 0.98725 0.96109 0.96804 1.17971 1.00378 0.85022 0.94202 1.91496 1.77637 1.45489 1.97356 1.17862 1.03618 0.95147 0.80266 1.91490 1.90810 1.83847 1.45965 1.21124 0.98919 0.93411 1.00843 0.90468 0.92958 0.88375 0.91100 0.87602 0.86637 0.89973 0.91138 0.81660 0.80954 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.92 8.78 127.77 1.12 3.04 16 2 N -0.49 -22.57 2.59 -658.86 -1.70 -24.27 16 3 C -0.34 -19.66 9.37 84.04 0.79 -18.88 16 4 H 0.04 2.92 7.90 -2.91 -0.02 2.90 16 5 C 0.01 0.49 5.29 84.93 0.45 0.94 16 6 N -0.91 -54.27 13.96 21.66 0.30 -53.97 16 7 Si 0.96 41.04 24.96 68.60 1.71 42.76 16 8 H -0.24 -8.91 6.69 99.48 0.67 -8.25 16 9 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 11 C 0.45 19.51 7.63 87.66 0.67 20.18 16 12 O -0.62 -32.59 15.85 -3.10 -0.05 -32.64 16 13 C -0.12 -3.14 4.30 29.85 0.13 -3.01 16 14 C -0.06 -1.41 4.63 29.85 0.14 -1.27 16 15 C -0.05 -1.00 5.13 -19.87 -0.10 -1.10 16 16 C -0.09 -1.27 9.70 22.27 0.22 -1.05 16 17 C -0.11 -1.60 10.02 22.31 0.22 -1.37 16 18 C 0.04 0.87 7.31 22.41 0.16 1.04 16 19 F -0.14 -3.10 17.18 44.97 0.77 -2.33 16 20 C 0.05 1.10 7.31 22.41 0.16 1.26 16 21 F -0.14 -3.47 17.18 44.97 0.77 -2.70 16 22 C -0.12 -2.44 9.68 22.31 0.22 -2.22 16 23 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.05 1.92 3.42 -2.39 -0.01 1.91 16 25 H 0.10 2.47 6.64 -2.39 -0.02 2.46 16 26 H 0.28 15.17 8.31 -92.70 -0.77 14.40 16 27 H 0.11 2.40 7.41 -2.39 -0.02 2.38 16 28 H 0.12 2.40 8.11 -2.39 -0.02 2.38 16 29 H 0.08 2.07 8.04 -2.38 -0.02 2.05 16 30 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 31 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -74.37 291.97 7.08 -67.29 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.10 Total: 8.31 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.18 Total: -2.45 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.40 Total: -78.24 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 1.55 Total: -5.03 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.71 Total: 42.76 kcal Total: -74.37 7.08 -67.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701206096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.698 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds