Wall clock time and date at job start Mon Mar 30 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.63561 * 300.69385 * 9 7 2 11 11 C 1.55160 * 110.71986 * 177.55871 * 9 7 2 12 12 C 1.54907 * 101.57851 * 206.13148 * 11 9 7 13 13 N 1.47426 * 104.83416 * 37.00998 * 12 11 9 14 14 C 1.34778 * 125.64947 * 155.91091 * 13 12 11 15 15 O 1.21693 * 120.00128 * 179.97438 * 14 13 12 16 16 C 1.43203 * 119.99955 * 359.97318 * 14 13 12 17 17 C 7.94083 * 82.58831 * 205.02876 * 2 1 3 18 18 C 9.30142 * 84.77247 * 202.99165 * 2 1 3 19 19 C 1.39838 * 120.16960 * 292.26501 * 18 17 16 20 20 C 1.37892 * 119.82307 * 179.72711 * 19 18 17 21 21 C 1.38401 * 120.17117 * 0.57259 * 20 19 18 22 22 C 1.38407 * 120.34431 * 359.70531 * 21 20 19 23 23 C 1.37882 * 120.17130 * 359.97438 * 22 21 20 24 24 C 1.47320 * 108.73395 * 335.71180 * 13 12 11 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09004 * 111.00124 * 324.20222 * 11 9 7 27 27 H 1.09002 * 111.00637 * 88.01884 * 11 9 7 28 28 H 1.09008 * 110.36571 * 155.84783 * 12 11 9 29 29 H 1.09002 * 110.36712 * 278.16514 * 12 11 9 30 30 H 1.08000 * 120.08924 * 0.02688 * 19 18 17 31 31 H 1.07995 * 119.91352 * 180.32413 * 20 19 18 32 32 H 1.08002 * 119.82530 * 179.71899 * 21 20 19 33 33 H 1.08002 * 119.91140 * 180.02562 * 22 21 20 34 34 H 1.08003 * 120.08625 * 180.02562 * 23 22 21 35 35 H 1.09001 * 110.06469 * 241.87330 * 24 13 12 36 36 H 1.09001 * 109.84433 * 120.61251 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6077 -2.5713 0.8775 11 6 2.2324 -3.6995 -0.0606 12 6 1.3504 -4.7887 -0.7204 13 7 0.5323 -4.0639 -1.7097 14 6 -0.0304 -4.6026 -2.8096 15 8 -0.6889 -3.9062 -3.5594 16 6 0.1465 -5.9946 -3.0958 17 6 0.2908 -7.1350 -3.3315 18 6 0.4677 -8.5269 -3.6180 19 6 0.1283 -9.4898 -2.6624 20 6 0.2962 -10.8283 -2.9480 21 6 0.8103 -11.2192 -4.1720 22 6 1.1540 -10.2719 -5.1208 23 6 0.9858 -8.9299 -4.8527 24 6 0.4274 -2.6541 -1.2952 25 1 -0.4850 -0.8401 -0.0004 26 1 3.0964 -3.4664 -0.6831 27 1 2.5438 -4.0009 0.9395 28 1 1.9739 -5.5330 -1.2159 29 1 0.7122 -5.2631 0.0252 30 1 -0.2689 -9.1861 -1.7051 31 1 0.0297 -11.5734 -2.2130 32 1 0.9438 -12.2690 -4.3881 33 1 1.5542 -10.5848 -6.0739 34 1 1.2540 -8.1919 -5.5943 35 1 -0.6146 -2.3968 -1.1052 36 1 0.8350 -2.0084 -2.0731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701229111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:47 Heat of formation + Delta-G solvation = 18.899997 kcal Electronic energy + Delta-G solvation = -18667.783101 eV Core-core repulsion = 15696.063333 eV Total energy + Delta-G solvation = -2971.719768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18307 -40.11353 -38.72423 -35.50839 -35.07823 -32.53207 -31.96732 -31.38071 -29.78692 -27.30803 -25.40598 -24.03946 -23.49037 -22.42614 -21.67821 -19.62428 -18.94535 -18.31485 -17.47457 -17.16759 -16.73232 -16.08709 -15.71305 -15.63233 -15.09651 -14.87528 -14.41179 -14.32949 -14.27400 -14.06849 -13.81089 -13.23893 -12.65522 -12.57738 -12.48984 -12.44852 -12.38246 -11.97982 -11.90077 -11.74916 -11.57294 -11.49491 -10.69284 -10.58654 -9.97663 -9.91397 -9.64000 -8.63825 -6.39681 -0.37219 0.40277 0.41606 1.33449 1.54680 1.61894 1.79538 1.80850 2.25848 2.57003 2.81585 2.93396 3.14909 3.72891 3.79834 3.97810 3.98657 4.11867 4.20674 4.25902 4.28880 4.45527 4.46623 4.55684 4.62656 4.85496 4.90231 4.95939 5.05893 5.06169 5.21746 5.38694 5.41060 5.47521 5.51090 5.92446 5.96137 5.99478 6.14010 6.29513 6.56666 6.75105 7.41293 8.74374 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041939 B = 0.003218 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.482256 B = 8700.081222 C = 8918.225949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.031 4.031 3 Si 1.114 2.886 4 H -0.288 1.288 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.604 4.604 8 H 0.059 0.941 9 C 0.019 3.981 10 H 0.021 0.979 11 C -0.108 4.108 12 C 0.101 3.899 13 N -0.601 5.601 14 C 0.632 3.368 15 O -0.580 6.580 16 C -0.228 4.228 17 C -0.008 4.008 18 C -0.036 4.036 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.095 4.095 22 C -0.122 4.122 23 C -0.097 4.097 24 C 0.129 3.871 25 H 0.260 0.740 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.032 0.968 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -25.154 -4.756 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.230 4.230 3 Si 0.935 3.065 4 H -0.214 1.214 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.642 4.642 8 H 0.077 0.923 9 C 0.000 4.000 10 H 0.039 0.961 11 C -0.146 4.146 12 C -0.020 4.020 13 N -0.332 5.332 14 C 0.423 3.577 15 O -0.463 6.463 16 C -0.230 4.230 17 C -0.011 4.011 18 C -0.036 4.036 19 C -0.110 4.110 20 C -0.138 4.138 21 C -0.112 4.112 22 C -0.139 4.139 23 C -0.115 4.115 24 C 0.006 3.994 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.173 0.827 34 H 0.147 0.853 35 H 0.050 0.950 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.339 -23.167 -5.167 24.130 hybrid contribution -0.374 -0.867 -0.107 0.950 sum 3.965 -24.034 -5.274 24.923 Atomic orbital electron populations 1.70939 1.08022 1.30433 1.47887 1.27305 0.96523 1.06700 0.92488 0.82969 0.74144 0.71346 0.77994 1.21422 1.19979 1.18816 1.22262 0.94634 0.91885 1.55437 0.92285 1.19895 0.93924 0.95553 0.90667 0.96125 1.22705 0.97163 0.93239 1.01491 1.22611 0.93424 0.95281 0.90726 1.48784 1.49824 1.11780 1.22824 1.14665 0.79228 0.83517 0.80335 1.90822 1.42826 1.62806 1.49821 1.20073 1.06525 0.92207 1.04231 1.19759 0.94038 0.91335 0.95968 1.16302 1.05649 0.84596 0.97093 1.21499 0.97926 0.93069 0.98467 1.21475 0.98972 0.95014 0.98373 1.21842 0.95246 1.01407 0.92747 1.21450 0.99796 0.91446 1.01227 1.21490 0.97329 0.97954 0.94697 1.22415 0.98966 0.79199 0.98786 0.92935 0.91473 0.88210 0.88794 0.89575 0.84693 0.82441 0.82249 0.82659 0.85304 0.94987 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.45 21.45 0.29 -57.01 16 2 C -0.03 -1.76 5.34 84.65 0.45 -1.31 16 3 Si 1.11 49.80 29.90 68.60 2.05 51.85 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.60 -32.81 8.38 25.60 0.21 -32.59 16 8 H 0.06 3.10 7.77 -2.91 -0.02 3.07 16 9 C 0.02 0.92 2.46 -10.35 -0.03 0.89 16 10 H 0.02 1.06 8.00 -2.39 -0.02 1.04 16 11 C -0.11 -3.99 6.50 31.99 0.21 -3.78 16 12 C 0.10 3.35 6.67 86.85 0.58 3.92 16 13 N -0.60 -25.83 3.33 -819.87 -2.73 -28.56 16 14 C 0.63 28.00 7.70 85.49 0.66 28.65 16 15 O -0.58 -30.46 17.42 -4.33 -0.08 -30.53 16 16 C -0.23 -8.17 12.49 30.02 0.38 -7.79 16 17 C -0.01 -0.25 13.24 30.02 0.40 0.15 16 18 C -0.04 -0.80 5.74 -21.26 -0.12 -0.92 16 19 C -0.09 -1.55 9.77 22.58 0.22 -1.32 16 20 C -0.12 -1.35 10.03 22.23 0.22 -1.12 16 21 C -0.09 -0.89 10.04 22.35 0.22 -0.66 16 22 C -0.12 -1.44 10.03 22.23 0.22 -1.21 16 23 C -0.10 -1.74 9.77 22.57 0.22 -1.52 16 24 C 0.13 6.54 5.48 86.67 0.48 7.01 16 25 H 0.26 16.02 5.63 -92.71 -0.52 15.49 16 26 H 0.07 2.52 8.03 -2.38 -0.02 2.50 16 27 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.09 2.63 7.69 -2.38 -0.02 2.61 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 31 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 33 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.03 1.75 7.01 -2.39 -0.02 1.73 16 36 H 0.04 2.03 7.81 -2.39 -0.02 2.01 16 Total: -1.00 -73.80 317.60 5.18 -68.62 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.33 Total: 7.24 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.32 Total: -11.61 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.44 Total: -85.57 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.08 Total: -30.53 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -73.80 5.18 -68.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701229111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.519 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds