Wall clock time and date at job start Mon Mar 30 2020 05:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 N 1.46499 * 109.47001 * 119.99915 * 2 1 3 5 5 C 1.37101 * 120.00046 * 300.86388 * 4 2 1 6 6 H 1.08001 * 120.00155 * 43.39367 * 5 4 2 7 7 C 1.38948 * 119.99622 * 223.39665 * 5 4 2 8 8 N 1.31409 * 120.00458 * 22.25950 * 7 5 4 9 9 Si 1.86804 * 119.99628 * 202.26222 * 7 5 4 10 10 H 1.48499 * 109.47281 * 269.99767 * 9 7 5 11 11 H 1.48504 * 109.47271 * 29.99861 * 9 7 5 12 12 H 1.48505 * 109.47362 * 149.99915 * 9 7 5 13 13 C 1.34778 * 119.99892 * 120.86086 * 4 2 1 14 14 O 1.21301 * 119.99625 * 184.58601 * 13 4 2 15 15 C 1.50693 * 120.00069 * 4.58641 * 13 4 2 16 16 H 1.09001 * 109.46548 * 40.14445 * 15 13 4 17 17 C 1.53038 * 109.46392 * 280.17509 * 15 13 4 18 18 C 1.50806 * 109.18655 * 286.68057 * 17 15 13 19 19 O 1.21232 * 120.01996 * 145.74076 * 18 17 15 20 20 N 1.34564 * 119.96719 * 325.76866 * 18 17 15 21 21 C 1.34340 * 120.98331 * 4.43174 * 20 18 17 22 22 O 1.21542 * 119.20818 * 191.99622 * 21 20 18 23 23 N 1.34292 * 121.58461 * 12.01907 * 21 20 18 24 24 H 1.08994 * 109.47113 * 305.50571 * 1 2 3 25 25 H 1.09001 * 109.46700 * 65.50757 * 1 2 3 26 26 H 1.09000 * 109.47105 * 185.50065 * 1 2 3 27 27 H 1.09000 * 109.47514 * 240.00154 * 2 1 3 28 28 H 1.09002 * 109.47258 * 183.37299 * 3 2 1 29 29 H 1.08995 * 109.47164 * 303.37696 * 3 2 1 30 30 H 1.09000 * 109.47088 * 63.37736 * 3 2 1 31 31 H 0.96994 * 120.00244 * 3.75436 * 8 7 5 32 32 H 1.09004 * 109.52187 * 46.59394 * 17 15 13 33 33 H 1.08999 * 109.52351 * 166.76965 * 17 15 13 34 34 H 0.96990 * 119.50843 * 184.45534 * 20 18 17 35 35 H 0.96998 * 119.53398 * 185.70856 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6725 -0.2326 2.4413 6 1 0.6558 0.0714 2.6417 7 6 2.6303 -0.1596 3.4453 8 7 3.9054 -0.0970 3.1338 9 14 2.1052 -0.1504 5.2380 10 1 1.8903 1.2497 5.6837 11 1 0.8422 -0.9169 5.3879 12 1 3.1658 -0.7767 6.0677 13 6 2.8074 -1.7762 1.0726 14 8 3.1436 -2.3970 2.0590 15 6 3.2721 -2.2187 -0.2909 16 1 3.5298 -1.3442 -0.8883 17 6 2.1513 -2.9970 -0.9839 18 6 2.0223 -4.3561 -0.3433 19 8 0.9330 -4.8789 -0.2441 20 7 3.1168 -4.9881 0.1187 21 6 4.3199 -4.3907 0.0998 22 8 5.3151 -5.0545 0.3146 23 7 4.4494 -3.0776 -0.1502 24 1 -0.3633 0.5968 0.8365 25 1 -0.3633 0.4261 -0.9352 26 1 -0.3633 -1.0229 0.0985 27 1 1.8934 -0.5138 -0.8900 28 1 3.1283 1.4431 -0.0605 29 1 1.6281 1.9735 -0.8581 30 1 1.7269 1.9385 0.9187 31 1 4.1755 -0.0468 2.2036 32 1 1.2119 -2.4541 -0.8786 33 1 2.3888 -3.1139 -2.0412 34 1 3.0359 -5.8884 0.4702 35 1 5.3354 -2.6929 -0.2390 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701247423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:00 Heat of formation + Delta-G solvation = -87.709952 kcal Electronic energy + Delta-G solvation = -22270.249717 eV Core-core repulsion = 18883.057732 eV Total energy + Delta-G solvation = -3387.191985 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.49941 -38.98035 -38.55605 -35.92751 -35.14975 -33.99469 -32.49657 -30.87450 -29.88822 -26.75867 -26.06155 -24.03765 -23.20681 -21.30663 -20.23949 -19.56710 -17.82662 -17.59648 -16.78166 -16.58589 -15.91024 -15.64222 -14.85888 -14.66183 -14.21955 -13.99030 -13.75354 -13.63638 -13.46443 -13.03263 -12.71578 -12.30938 -12.12712 -11.66763 -11.40364 -11.25712 -10.86250 -10.73594 -10.58481 -10.42150 -10.14819 -10.09457 -9.97089 -9.78686 -9.57300 -8.74622 -8.23090 -7.54418 -6.53166 -4.00277 1.94725 2.73394 3.27540 3.36077 3.47695 3.53787 3.61338 3.65572 4.16703 4.47507 4.58279 4.78581 5.00369 5.14436 5.24272 5.32547 5.36379 5.49061 5.69058 5.74039 6.01008 6.09477 6.26485 6.29092 6.33586 6.44216 6.71328 6.83708 7.01800 7.50686 7.68848 7.79606 8.26476 8.43938 8.62894 8.99725 9.41057 9.86911 10.78663 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.008745 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.073852 B = 3201.079752 C = 3818.083998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.115 3.885 3 C -0.149 4.149 4 N -0.442 5.442 5 C -0.421 4.421 6 H 0.074 0.926 7 C 0.039 3.961 8 N -0.843 5.843 9 Si 1.076 2.924 10 H -0.290 1.290 11 H -0.286 1.286 12 H -0.282 1.282 13 C 0.429 3.571 14 O -0.525 6.525 15 C 0.117 3.883 16 H 0.116 0.884 17 C -0.149 4.149 18 C 0.534 3.466 19 O -0.507 6.507 20 N -0.669 5.669 21 C 0.727 3.273 22 O -0.569 6.569 23 N -0.700 5.700 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.269 0.731 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.423 0.577 35 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 0.569 -11.331 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.011 3.989 3 C -0.207 4.207 4 N -0.165 5.165 5 C -0.547 4.547 6 H 0.092 0.908 7 C -0.174 4.174 8 N -0.474 5.474 9 Si 0.903 3.097 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.207 1.207 13 C 0.214 3.786 14 O -0.403 6.403 15 C 0.007 3.993 16 H 0.134 0.866 17 C -0.190 4.190 18 C 0.321 3.679 19 O -0.379 6.379 20 N -0.337 5.337 21 C 0.428 3.572 22 O -0.445 6.445 23 N -0.357 5.357 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.264 0.736 35 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.406 -0.238 -9.177 9.491 hybrid contribution -0.301 0.016 -1.514 1.544 sum -2.707 -0.222 -10.692 11.031 Atomic orbital electron populations 1.22046 0.95754 1.02009 1.01338 1.21259 0.94652 0.93887 0.89119 1.21990 1.00534 0.96298 1.01877 1.43583 1.45534 1.22145 1.05271 1.19809 0.97096 1.50448 0.87360 0.90821 1.26180 0.93118 0.92721 1.05335 1.70613 1.16900 1.38272 1.21624 0.83415 0.75779 0.76207 0.74290 1.21656 1.21164 1.20693 1.20376 0.86080 0.82744 0.89394 1.90666 1.57166 1.54277 1.38206 1.21224 0.85882 0.94011 0.98194 0.86581 1.22269 1.02245 0.93058 1.01381 1.20702 0.83417 0.87214 0.76517 1.90750 1.25679 1.67407 1.54096 1.44047 1.08162 1.20416 1.61070 1.15468 0.82874 0.82421 0.76459 1.90983 1.35694 1.63279 1.54547 1.44683 1.09988 1.05697 1.75293 0.91674 0.92982 0.92862 0.91799 0.93340 0.93340 0.91076 0.92052 0.85516 0.86561 0.73599 0.73783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.95 37.16 0.33 -1.97 16 2 C 0.12 1.88 2.39 -67.93 -0.16 1.72 16 3 C -0.15 -2.34 9.23 37.16 0.34 -2.00 16 4 N -0.44 -9.63 2.21 -107.73 -0.24 -9.87 16 5 C -0.42 -10.69 7.79 -14.93 -0.12 -10.81 16 6 H 0.07 1.86 7.08 -52.49 -0.37 1.49 16 7 C 0.04 1.07 4.26 -17.47 -0.07 0.99 16 8 N -0.84 -24.16 12.52 55.50 0.69 -23.47 16 9 Si 1.08 25.12 29.97 -169.99 -5.10 20.02 16 10 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.43 9.49 5.15 -10.99 -0.06 9.44 16 14 O -0.53 -14.40 14.25 5.54 0.08 -14.32 16 15 C 0.12 1.83 2.77 -69.11 -0.19 1.64 16 16 H 0.12 1.44 6.89 -51.93 -0.36 1.08 16 17 C -0.15 -2.00 5.20 -27.81 -0.14 -2.15 16 18 C 0.53 8.95 7.44 -11.03 -0.08 8.87 16 19 O -0.51 -9.70 17.93 5.60 0.10 -9.60 16 20 N -0.67 -11.21 5.18 -16.02 -0.08 -11.29 16 21 C 0.73 13.17 7.98 -87.74 -0.70 12.47 16 22 O -0.57 -11.74 17.97 5.33 0.10 -11.65 16 23 N -0.70 -11.32 4.90 -60.11 -0.29 -11.61 16 24 H 0.06 1.07 7.29 -51.93 -0.38 0.69 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.83 7.92 -51.93 -0.41 0.42 16 27 H 0.06 0.84 4.75 -51.93 -0.25 0.59 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.29 7.57 -51.93 -0.39 0.90 16 31 H 0.27 7.60 7.26 -40.82 -0.30 7.31 16 32 H 0.13 1.70 6.53 -51.93 -0.34 1.36 16 33 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.42 6.50 8.86 -40.82 -0.36 6.14 16 35 H 0.42 6.13 8.90 -40.82 -0.36 5.77 16 LS Contribution 293.03 15.07 4.42 4.42 Total: -1.00 -35.29 293.03 -5.18 -40.47 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.01 Total: 8.69 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: -0.85 Total: 18.20 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.08 Total: -56.24 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: 0.28 Total: -35.57 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.10 Total: 20.02 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.29 -5.18 -40.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701247423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.237 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds