Wall clock time and date at job start Mon Mar 30 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 N 1.46499 * 109.47001 * 119.99915 * 2 1 3 5 5 C 1.37101 * 120.00046 * 300.86388 * 4 2 1 6 6 H 1.08001 * 120.00155 * 43.39367 * 5 4 2 7 7 C 1.38948 * 119.99622 * 223.39665 * 5 4 2 8 8 N 1.31409 * 120.00458 * 22.25950 * 7 5 4 9 9 Si 1.86804 * 119.99628 * 202.26222 * 7 5 4 10 10 H 1.48499 * 109.47281 * 269.99767 * 9 7 5 11 11 H 1.48504 * 109.47271 * 29.99861 * 9 7 5 12 12 H 1.48505 * 109.47362 * 149.99915 * 9 7 5 13 13 C 1.34778 * 119.99892 * 120.86086 * 4 2 1 14 14 O 1.21301 * 119.99625 * 184.58601 * 13 4 2 15 15 C 1.50693 * 120.00069 * 4.58641 * 13 4 2 16 16 H 1.09001 * 109.46548 * 40.14445 * 15 13 4 17 17 C 1.53038 * 109.46392 * 280.17509 * 15 13 4 18 18 C 1.50806 * 109.18655 * 286.68057 * 17 15 13 19 19 O 1.21232 * 120.01996 * 145.74076 * 18 17 15 20 20 N 1.34564 * 119.96719 * 325.76866 * 18 17 15 21 21 C 1.34340 * 120.98331 * 4.43174 * 20 18 17 22 22 O 1.21542 * 119.20818 * 191.99622 * 21 20 18 23 23 N 1.34292 * 121.58461 * 12.01907 * 21 20 18 24 24 H 1.08994 * 109.47113 * 305.50571 * 1 2 3 25 25 H 1.09001 * 109.46700 * 65.50757 * 1 2 3 26 26 H 1.09000 * 109.47105 * 185.50065 * 1 2 3 27 27 H 1.09000 * 109.47514 * 240.00154 * 2 1 3 28 28 H 1.09002 * 109.47258 * 183.37299 * 3 2 1 29 29 H 1.08995 * 109.47164 * 303.37696 * 3 2 1 30 30 H 1.09000 * 109.47088 * 63.37736 * 3 2 1 31 31 H 0.96994 * 120.00244 * 3.75436 * 8 7 5 32 32 H 1.09004 * 109.52187 * 46.59394 * 17 15 13 33 33 H 1.08999 * 109.52351 * 166.76965 * 17 15 13 34 34 H 0.96990 * 119.50843 * 184.45534 * 20 18 17 35 35 H 0.96998 * 119.53398 * 185.70856 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6725 -0.2326 2.4413 6 1 0.6558 0.0714 2.6417 7 6 2.6303 -0.1596 3.4453 8 7 3.9054 -0.0970 3.1338 9 14 2.1052 -0.1504 5.2380 10 1 1.8903 1.2497 5.6837 11 1 0.8422 -0.9169 5.3879 12 1 3.1658 -0.7767 6.0677 13 6 2.8074 -1.7762 1.0726 14 8 3.1436 -2.3970 2.0590 15 6 3.2721 -2.2187 -0.2909 16 1 3.5298 -1.3442 -0.8883 17 6 2.1513 -2.9970 -0.9839 18 6 2.0223 -4.3561 -0.3433 19 8 0.9330 -4.8789 -0.2441 20 7 3.1168 -4.9881 0.1187 21 6 4.3199 -4.3907 0.0998 22 8 5.3151 -5.0545 0.3146 23 7 4.4494 -3.0776 -0.1502 24 1 -0.3633 0.5968 0.8365 25 1 -0.3633 0.4261 -0.9352 26 1 -0.3633 -1.0229 0.0985 27 1 1.8934 -0.5138 -0.8900 28 1 3.1283 1.4431 -0.0605 29 1 1.6281 1.9735 -0.8581 30 1 1.7269 1.9385 0.9187 31 1 4.1755 -0.0468 2.2036 32 1 1.2119 -2.4541 -0.8786 33 1 2.3888 -3.1139 -2.0412 34 1 3.0359 -5.8884 0.4702 35 1 5.3354 -2.6929 -0.2390 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701247423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:59 Heat of formation + Delta-G solvation = -116.766108 kcal Electronic energy + Delta-G solvation = -22271.509686 eV Core-core repulsion = 18883.057732 eV Total energy + Delta-G solvation = -3388.451955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.86749 -40.59420 -39.96460 -37.42920 -36.72706 -35.38409 -34.31698 -32.19859 -31.46084 -28.02706 -27.57184 -25.70882 -24.57667 -22.75722 -21.78277 -20.99002 -19.18670 -19.17233 -18.21176 -18.17020 -17.32461 -17.03631 -16.47954 -16.13768 -15.72557 -15.59908 -15.34908 -15.16575 -14.83821 -14.46101 -14.04529 -13.77600 -13.36091 -13.05330 -12.85442 -12.72394 -12.59405 -12.11938 -12.04951 -12.02915 -11.88279 -11.48857 -11.46594 -11.38531 -11.08714 -10.61332 -9.90155 -9.38061 -8.55713 -5.99692 0.60735 1.39479 1.47409 1.59077 1.72990 1.97666 2.05621 2.23129 2.46252 2.90762 3.25434 3.28357 3.52913 3.78415 3.97672 4.11370 4.20405 4.39409 4.41270 4.50187 4.82213 4.91566 5.01144 5.08908 5.10156 5.18017 5.49578 5.55221 5.74810 5.85219 6.17840 6.26232 6.37120 6.84498 7.08874 7.18434 7.54143 8.11954 8.76256 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.008745 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.073852 B = 3201.079752 C = 3818.083998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.107 3.893 3 C -0.143 4.143 4 N -0.455 5.455 5 C -0.419 4.419 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.880 5.880 9 Si 1.105 2.895 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.300 1.300 13 C 0.419 3.581 14 O -0.588 6.588 15 C 0.128 3.872 16 H 0.164 0.836 17 C -0.141 4.141 18 C 0.527 3.473 19 O -0.536 6.536 20 N -0.669 5.669 21 C 0.726 3.274 22 O -0.600 6.600 23 N -0.691 5.691 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.043 0.957 27 H 0.108 0.892 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.135 0.865 33 H 0.176 0.824 34 H 0.425 0.575 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 1.522 -14.216 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.005 3.995 3 C -0.201 4.201 4 N -0.178 5.178 5 C -0.547 4.547 6 H 0.085 0.915 7 C -0.212 4.212 8 N -0.513 5.513 9 Si 0.930 3.070 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.226 1.226 13 C 0.206 3.794 14 O -0.470 6.470 15 C 0.018 3.982 16 H 0.182 0.818 17 C -0.181 4.181 18 C 0.317 3.683 19 O -0.411 6.411 20 N -0.337 5.337 21 C 0.427 3.573 22 O -0.479 6.479 23 N -0.347 5.347 24 H 0.059 0.941 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.193 0.807 34 H 0.266 0.734 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -3.333 0.774 -12.097 12.571 hybrid contribution -0.110 -0.311 -0.662 0.739 sum -3.443 0.463 -12.758 13.223 Atomic orbital electron populations 1.22017 0.94608 1.01349 1.02679 1.21630 0.95549 0.94193 0.88158 1.21942 1.00186 0.95984 1.01978 1.43853 1.45399 1.22614 1.05891 1.19851 0.96451 1.49052 0.89333 0.91524 1.27062 0.93228 0.92804 1.08140 1.70694 1.17789 1.41857 1.20966 0.83040 0.74929 0.77458 0.71601 1.18892 1.20764 1.22629 1.21506 0.84592 0.81901 0.91393 1.90637 1.59080 1.56145 1.41157 1.21290 0.86312 0.95806 0.94760 0.81837 1.22447 1.01574 0.90194 1.03905 1.21402 0.82703 0.88283 0.75938 1.90743 1.26533 1.68465 1.55342 1.44083 1.08056 1.20695 1.60817 1.15619 0.82689 0.82944 0.76097 1.90961 1.36790 1.64181 1.55944 1.44667 1.10775 1.04994 1.74303 0.94065 0.88648 0.93791 0.87404 0.94093 0.89107 0.94519 0.92990 0.84706 0.80689 0.73438 0.72897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 8.95 71.98 0.64 -3.30 16 2 C 0.11 3.12 2.39 44.99 0.11 3.23 16 3 C -0.14 -4.05 9.23 71.98 0.66 -3.39 16 4 N -0.46 -19.21 2.21 -613.13 -1.35 -20.56 16 5 C -0.42 -21.42 7.79 84.04 0.65 -20.76 16 6 H 0.07 3.41 7.08 -2.91 -0.02 3.39 16 7 C -0.01 -0.29 4.26 84.93 0.36 0.07 16 8 N -0.88 -51.57 12.52 21.66 0.27 -51.29 16 9 Si 1.11 51.75 29.97 68.60 2.06 53.81 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 13 C 0.42 17.99 5.15 87.65 0.45 18.44 16 14 O -0.59 -32.59 14.25 -3.09 -0.04 -32.63 16 15 C 0.13 3.53 2.77 44.27 0.12 3.66 16 16 H 0.16 3.07 6.89 -2.39 -0.02 3.05 16 17 C -0.14 -3.15 5.20 29.89 0.16 -3.00 16 18 C 0.53 16.54 7.44 87.72 0.65 17.20 16 19 O -0.54 -19.79 17.93 -2.88 -0.05 -19.84 16 20 N -0.67 -21.78 5.18 -441.64 -2.29 -24.06 16 21 C 0.73 25.50 7.98 179.34 1.43 26.93 16 22 O -0.60 -24.65 17.97 -3.85 -0.07 -24.72 16 23 N -0.69 -20.77 4.90 -462.65 -2.27 -23.04 16 24 H 0.04 1.28 7.29 -2.39 -0.02 1.26 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.24 7.92 -2.39 -0.02 1.22 16 27 H 0.11 2.17 4.75 -2.39 -0.01 2.16 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.28 7.57 -2.39 -0.02 1.26 16 31 H 0.26 15.00 7.26 -92.71 -0.67 14.32 16 32 H 0.13 2.92 6.53 -2.39 -0.02 2.90 16 33 H 0.18 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.42 13.08 8.86 -92.72 -0.82 12.25 16 35 H 0.43 11.58 8.90 -92.71 -0.83 10.76 16 Total: -1.00 -81.73 293.03 1.10 -80.62 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.40 Total: 22.65 kcal Atomic # 6 Polarization: 33.82 SS G_CDS: 5.25 Total: 39.07 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -5.64 Total: -118.96 kcal Atomic # 8 Polarization: -77.03 SS G_CDS: -0.16 Total: -77.19 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.06 Total: 53.81 kcal Total: -81.73 1.10 -80.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701247423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.141 kcal (2) G-P(sol) polarization free energy of solvation -81.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds