Wall clock time and date at job start Mon Mar 30 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46507 * 124.17730 * 180.12117 * 7 5 4 9 9 C 1.52999 * 109.47261 * 269.95727 * 8 7 5 10 10 C 1.50694 * 109.47434 * 179.97438 * 9 8 7 11 11 O 1.21293 * 119.99722 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00300 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99813 * 179.97438 * 12 10 9 14 14 H 1.07996 * 120.00112 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99560 * 180.02562 * 13 12 10 16 16 N 1.31406 * 119.99898 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00193 * 0.02562 * 15 13 12 18 18 H 1.48509 * 109.47232 * 89.99834 * 17 15 13 19 19 H 1.48496 * 109.47695 * 209.99952 * 17 15 13 20 20 H 1.48505 * 109.47147 * 330.00241 * 17 15 13 21 21 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 22 22 O 1.21237 * 127.15808 * 180.02562 * 21 7 5 23 23 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 24 24 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 26 26 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 27 27 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 28 28 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 29 29 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 30 30 H 1.08999 * 109.46913 * 29.95392 * 8 7 5 31 31 H 1.08995 * 109.47189 * 149.95687 * 8 7 5 32 32 H 1.09004 * 109.46812 * 300.00411 * 9 8 7 33 33 H 1.09004 * 109.46925 * 59.99250 * 9 8 7 34 34 H 0.96994 * 119.99422 * 0.02562 * 12 10 9 35 35 H 0.97000 * 120.00198 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4686 -2.7992 1.4837 9 6 2.5252 -3.9701 1.7663 10 6 3.2424 -5.0045 2.5948 11 8 4.3947 -4.8229 2.9270 12 7 2.6031 -6.1310 2.9675 13 6 3.2559 -7.0723 3.7208 14 1 4.2822 -6.9109 4.0159 15 6 2.5970 -8.2339 4.1046 16 7 3.2224 -9.1359 4.8271 17 14 0.8222 -8.5133 3.5936 18 1 0.7883 -9.2213 2.2886 19 1 0.1347 -9.3360 4.6211 20 1 0.1323 -7.2045 3.4647 21 6 2.0633 -0.7692 1.1923 22 8 1.8892 -0.5152 2.3650 23 1 -0.3633 0.5247 -0.8836 24 1 -0.3633 -1.0275 -0.0125 25 1 -0.3633 0.5029 0.8962 26 1 1.7232 1.9495 0.8962 27 1 3.1565 1.4125 -0.0126 28 1 1.7029 1.9571 -0.8836 29 1 1.9042 -0.5386 -2.0948 30 1 4.3417 -3.1594 0.9396 31 1 3.7863 -2.3530 2.4260 32 1 1.6519 -3.6099 2.3103 33 1 2.2074 -4.4163 0.8239 34 1 1.6815 -6.2760 2.7022 35 1 2.7626 -9.9470 5.0947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701322330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:45 Heat of formation + Delta-G solvation = -80.897474 kcal Electronic energy + Delta-G solvation = -20664.522590 eV Core-core repulsion = 17277.626016 eV Total energy + Delta-G solvation = -3386.896574 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.65366 -38.72091 -38.51210 -36.80861 -35.61621 -34.04392 -32.04713 -31.67834 -30.69483 -27.98470 -26.09421 -24.44532 -23.56496 -21.63970 -20.44222 -19.37934 -18.34220 -18.09822 -16.86731 -16.49144 -16.04190 -15.88921 -15.08990 -14.88035 -14.75056 -14.55589 -14.29728 -13.92663 -13.44446 -13.06117 -12.79144 -12.72081 -12.68487 -12.62290 -12.18552 -12.10015 -11.96886 -11.25186 -10.92947 -10.88339 -10.59565 -10.23118 -9.99817 -9.89472 -9.71689 -9.60174 -8.60214 -8.20707 -6.32575 -3.84111 1.46850 2.07675 2.86645 2.89790 3.03048 3.07517 3.15308 3.65747 3.69205 4.09661 4.14944 4.34116 4.60272 4.93773 5.02896 5.08676 5.14115 5.18010 5.18927 5.24155 5.42840 5.52567 5.53798 5.62122 5.64999 6.01978 6.06284 6.19208 6.56135 6.95440 7.24472 7.54197 7.99383 8.12007 8.55408 8.91809 9.40058 9.77278 10.80271 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030330 B = 0.004271 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.949552 B = 6555.004687 C = 6698.843452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.116 3.884 3 C -0.146 4.146 4 N -0.726 5.726 5 C 0.700 3.300 6 O -0.535 6.535 7 N -0.574 5.574 8 C 0.138 3.862 9 C -0.149 4.149 10 C 0.456 3.544 11 O -0.578 6.578 12 N -0.584 5.584 13 C -0.307 4.307 14 H 0.121 0.879 15 C 0.043 3.957 16 N -0.878 5.878 17 Si 0.879 3.121 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.269 1.269 21 C 0.527 3.473 22 O -0.459 6.459 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.437 0.563 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.372 0.628 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.178 20.562 -12.511 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.025 3.975 3 C -0.204 4.204 4 N -0.391 5.391 5 C 0.401 3.599 6 O -0.408 6.408 7 N -0.320 5.320 8 C 0.017 3.983 9 C -0.191 4.191 10 C 0.241 3.759 11 O -0.462 6.462 12 N -0.222 5.222 13 C -0.436 4.436 14 H 0.139 0.861 15 C -0.160 4.160 16 N -0.518 5.518 17 Si 0.705 3.295 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.195 1.195 21 C 0.312 3.688 22 O -0.328 6.328 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.282 0.718 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.205 0.795 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.125 20.068 -11.798 24.656 hybrid contribution -1.572 -0.398 -0.751 1.787 sum -9.697 19.669 -12.550 25.266 Atomic orbital electron populations 1.22000 0.90244 1.03952 1.04299 1.21480 0.97179 0.94284 0.84565 1.21992 1.02179 0.91955 1.04295 1.45763 1.55485 1.29031 1.08837 1.16014 0.79768 0.82212 0.81895 1.91044 1.47861 1.40969 1.60934 1.46568 1.49256 1.28362 1.07806 1.21477 0.94643 0.86322 0.95842 1.21821 0.99722 0.96151 1.01409 1.19417 0.87733 0.83508 0.85220 1.90572 1.17619 1.78513 1.59495 1.42200 1.13333 1.18152 1.48539 1.19468 1.00179 0.96457 1.27495 0.86116 1.25045 0.98433 0.95693 0.96852 1.69618 1.37202 1.09166 1.35827 0.86677 0.84596 0.78780 0.79415 1.19513 1.20067 1.19473 1.20798 0.77479 0.80577 0.89905 1.90816 1.56371 1.69063 1.16550 0.90320 0.91267 0.89729 0.89739 0.91324 0.90334 0.71844 0.87548 0.87754 0.89899 0.89614 0.79544 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.98 37.16 0.33 -0.52 16 2 C 0.12 0.90 1.37 -132.09 -0.18 0.72 16 3 C -0.15 -0.82 8.98 37.16 0.33 -0.48 16 4 N -0.73 -6.05 5.93 -52.85 -0.31 -6.36 16 5 C 0.70 9.18 8.63 -87.72 -0.76 8.43 16 6 O -0.54 -9.02 17.48 5.33 0.09 -8.92 16 7 N -0.57 -7.83 2.60 -120.63 -0.31 -8.14 16 8 C 0.14 2.24 4.99 -4.04 -0.02 2.22 16 9 C -0.15 -2.60 6.02 -27.89 -0.17 -2.77 16 10 C 0.46 10.57 7.78 -10.99 -0.09 10.49 16 11 O -0.58 -15.54 15.56 5.55 0.09 -15.45 16 12 N -0.58 -14.29 5.09 -10.97 -0.06 -14.34 16 13 C -0.31 -8.82 10.16 -14.93 -0.15 -8.97 16 14 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 15 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 16 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 17 Si 0.88 19.64 27.74 -169.99 -4.71 14.93 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 21 C 0.53 6.41 6.98 -10.56 -0.07 6.34 16 22 O -0.46 -6.77 17.76 5.59 0.10 -6.67 16 23 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.44 2.44 8.96 -40.82 -0.37 2.07 16 30 H 0.11 1.85 7.82 -51.93 -0.41 1.44 16 31 H 0.10 1.75 7.96 -51.93 -0.41 1.34 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.37 8.03 5.76 -40.82 -0.24 7.80 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -35.34 307.58 -4.93 -40.27 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.36 Total: 8.58 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -0.87 Total: 16.55 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.09 Total: -53.91 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: 0.28 Total: -31.05 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.34 -4.93 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701322330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.629 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds