Wall clock time and date at job start Mon Mar 30 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46507 * 124.17730 * 180.12117 * 7 5 4 9 9 C 1.52999 * 109.47261 * 269.95727 * 8 7 5 10 10 C 1.50694 * 109.47434 * 179.97438 * 9 8 7 11 11 O 1.21293 * 119.99722 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00300 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99813 * 179.97438 * 12 10 9 14 14 H 1.07996 * 120.00112 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99560 * 180.02562 * 13 12 10 16 16 N 1.31406 * 119.99898 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 120.00193 * 0.02562 * 15 13 12 18 18 H 1.48509 * 109.47232 * 89.99834 * 17 15 13 19 19 H 1.48496 * 109.47695 * 209.99952 * 17 15 13 20 20 H 1.48505 * 109.47147 * 330.00241 * 17 15 13 21 21 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 22 22 O 1.21237 * 127.15808 * 180.02562 * 21 7 5 23 23 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 24 24 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 26 26 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 27 27 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 28 28 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 29 29 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 30 30 H 1.08999 * 109.46913 * 29.95392 * 8 7 5 31 31 H 1.08995 * 109.47189 * 149.95687 * 8 7 5 32 32 H 1.09004 * 109.46812 * 300.00411 * 9 8 7 33 33 H 1.09004 * 109.46925 * 59.99250 * 9 8 7 34 34 H 0.96994 * 119.99422 * 0.02562 * 12 10 9 35 35 H 0.97000 * 120.00198 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4686 -2.7992 1.4837 9 6 2.5252 -3.9701 1.7663 10 6 3.2424 -5.0045 2.5948 11 8 4.3947 -4.8229 2.9270 12 7 2.6031 -6.1310 2.9675 13 6 3.2559 -7.0723 3.7208 14 1 4.2822 -6.9109 4.0159 15 6 2.5970 -8.2339 4.1046 16 7 3.2224 -9.1359 4.8271 17 14 0.8222 -8.5133 3.5936 18 1 0.7883 -9.2213 2.2886 19 1 0.1347 -9.3360 4.6211 20 1 0.1323 -7.2045 3.4647 21 6 2.0633 -0.7692 1.1923 22 8 1.8892 -0.5152 2.3650 23 1 -0.3633 0.5247 -0.8836 24 1 -0.3633 -1.0275 -0.0125 25 1 -0.3633 0.5029 0.8962 26 1 1.7232 1.9495 0.8962 27 1 3.1565 1.4125 -0.0126 28 1 1.7029 1.9571 -0.8836 29 1 1.9042 -0.5386 -2.0948 30 1 4.3417 -3.1594 0.9396 31 1 3.7863 -2.3530 2.4260 32 1 1.6519 -3.6099 2.3103 33 1 2.2074 -4.4163 0.8239 34 1 1.6815 -6.2760 2.7022 35 1 2.7626 -9.9470 5.0947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701322330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:44 Heat of formation + Delta-G solvation = -109.934501 kcal Electronic energy + Delta-G solvation = -20665.781730 eV Core-core repulsion = 17277.626016 eV Total energy + Delta-G solvation = -3388.155714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.61034 -40.42076 -39.77181 -37.74010 -36.81069 -36.05938 -33.85406 -32.95274 -31.85139 -28.41015 -27.76857 -25.76792 -24.88272 -22.57984 -21.49273 -21.25823 -20.30322 -19.07317 -18.13598 -17.68051 -17.28274 -16.84164 -16.73713 -16.36130 -16.25842 -15.51402 -15.38987 -15.32667 -14.73391 -14.36172 -14.34400 -14.09917 -13.65153 -13.51501 -13.24323 -13.09059 -13.02300 -12.53805 -12.46136 -12.35191 -12.02427 -11.91909 -11.58387 -11.20441 -11.09207 -10.60269 -10.48018 -10.31668 -8.45848 -6.07656 0.51494 1.06099 1.27705 1.32272 1.41832 1.82857 1.85700 2.10777 2.19451 2.77863 2.92648 3.09620 3.53298 3.72077 3.80242 3.82165 4.02990 4.28090 4.32586 4.46935 4.64216 4.66569 4.70538 4.77343 4.83872 4.92373 5.14248 5.22656 5.48528 5.80492 5.88814 5.99469 6.31101 6.50021 6.79293 7.06481 7.29878 7.83046 8.71381 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030330 B = 0.004271 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.949552 B = 6555.004687 C = 6698.843452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.127 3.873 3 C -0.144 4.144 4 N -0.697 5.697 5 C 0.698 3.302 6 O -0.578 6.578 7 N -0.578 5.578 8 C 0.143 3.857 9 C -0.131 4.131 10 C 0.455 3.545 11 O -0.621 6.621 12 N -0.584 5.584 13 C -0.334 4.334 14 H 0.059 0.941 15 C -0.010 4.010 16 N -0.929 5.929 17 Si 0.962 3.038 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.234 1.234 21 C 0.519 3.481 22 O -0.489 6.489 23 H 0.112 0.888 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.454 0.546 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.390 0.610 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.910 22.620 -14.644 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.037 3.963 3 C -0.202 4.202 4 N -0.364 5.364 5 C 0.398 3.602 6 O -0.454 6.454 7 N -0.324 5.324 8 C 0.021 3.979 9 C -0.173 4.173 10 C 0.242 3.758 11 O -0.508 6.508 12 N -0.224 5.224 13 C -0.463 4.463 14 H 0.078 0.922 15 C -0.210 4.210 16 N -0.569 5.569 17 Si 0.782 3.218 18 H -0.181 1.181 19 H -0.195 1.195 20 H -0.157 1.157 21 C 0.307 3.693 22 O -0.359 6.359 23 H 0.130 0.870 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.302 0.698 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.226 0.774 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.892 22.197 -13.970 28.798 hybrid contribution -0.283 -0.963 -0.048 1.005 sum -12.175 21.234 -14.018 28.207 Atomic orbital electron populations 1.22067 0.87830 1.04076 1.06213 1.21661 0.98624 0.94439 0.81614 1.22059 1.01597 0.90257 1.06238 1.45663 1.53607 1.27185 1.09927 1.16129 0.79929 0.82757 0.81361 1.91020 1.49885 1.42921 1.61615 1.46538 1.49430 1.28272 1.08142 1.21135 0.94313 0.86802 0.95661 1.21701 0.99757 0.94543 1.01251 1.20489 0.87341 0.83768 0.84176 1.90552 1.19966 1.79416 1.60829 1.42025 1.14078 1.17823 1.48496 1.19063 0.98583 0.98795 1.29907 0.92246 1.26104 1.04609 0.94332 0.95947 1.69788 1.40093 1.09981 1.36996 0.85401 0.76659 0.80388 0.79347 1.18051 1.19526 1.15743 1.21635 0.76643 0.80174 0.90807 1.90800 1.57345 1.69629 1.18155 0.86972 0.92116 0.89242 0.89230 0.92346 0.86934 0.69847 0.89291 0.88858 0.87371 0.87534 0.77413 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.98 71.98 0.65 -0.42 16 2 C 0.13 1.56 1.37 2.98 0.00 1.56 16 3 C -0.14 -1.07 8.98 71.98 0.65 -0.43 16 4 N -0.70 -9.49 5.93 -439.35 -2.61 -12.09 16 5 C 0.70 17.25 8.63 179.34 1.55 18.80 16 6 O -0.58 -19.13 17.48 -3.85 -0.07 -19.20 16 7 N -0.58 -15.19 2.60 -772.81 -2.01 -17.21 16 8 C 0.14 4.70 4.99 86.38 0.43 5.13 16 9 C -0.13 -4.44 6.02 29.85 0.18 -4.26 16 10 C 0.45 21.46 7.78 87.65 0.68 22.14 16 11 O -0.62 -35.13 15.56 -3.07 -0.05 -35.18 16 12 N -0.58 -28.66 5.09 -306.99 -1.56 -30.22 16 13 C -0.33 -20.01 10.16 84.04 0.85 -19.15 16 14 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 15 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 16 N -0.93 -56.37 13.96 21.66 0.30 -56.07 16 17 Si 0.96 39.44 27.74 68.60 1.90 41.34 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 20 H -0.23 -8.20 6.52 99.48 0.65 -7.55 16 21 C 0.52 11.76 6.98 87.94 0.61 12.37 16 22 O -0.49 -13.87 17.76 -2.90 -0.05 -13.92 16 23 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.45 3.34 8.96 -92.71 -0.83 2.51 16 30 H 0.09 3.22 7.82 -2.39 -0.02 3.20 16 31 H 0.09 3.24 7.96 -2.39 -0.02 3.22 16 32 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 33 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.39 16.01 5.76 -92.71 -0.53 15.48 16 35 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -83.17 307.58 1.64 -81.53 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.29 Total: 25.38 kcal Atomic # 6 Polarization: 29.56 SS G_CDS: 6.07 Total: 35.64 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -5.88 Total: -115.59 kcal Atomic # 8 Polarization: -68.13 SS G_CDS: -0.17 Total: -68.30 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.90 Total: 41.34 kcal Total: -83.17 1.64 -81.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701322330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.405 kcal (2) G-P(sol) polarization free energy of solvation -83.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds