Wall clock time and date at job start Mon Mar 30 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00323 * 2 1 4 4 C 1.50694 * 109.47423 * 293.95150 * 3 2 1 5 5 H 1.08001 * 119.99723 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00361 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99763 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00397 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46730 * 60.00193 * 8 6 4 10 10 H 1.48493 * 109.47280 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46885 * 300.00767 * 8 6 4 12 12 C 1.46906 * 110.99751 * 123.95259 * 2 1 3 13 13 C 1.50709 * 109.46795 * 66.04542 * 12 2 1 14 14 C 1.33815 * 122.44699 * 269.97612 * 13 12 2 15 15 S 1.70616 * 110.95046 * 179.78500 * 14 13 12 16 16 C 1.75833 * 91.56312 * 0.30804 * 15 14 13 17 17 C 1.46586 * 125.45770 * 179.97438 * 16 15 14 18 18 O 1.21700 * 120.00341 * 179.69383 * 17 16 15 19 19 N 1.34779 * 119.99683 * 359.68719 * 17 16 15 20 20 N 1.36605 * 119.99744 * 180.02562 * 19 17 16 21 21 C 1.36641 * 109.08309 * 359.69649 * 16 15 14 22 22 H 1.08999 * 109.47250 * 296.05262 * 1 2 3 23 23 H 1.09010 * 109.46776 * 56.04127 * 1 2 3 24 24 H 1.08990 * 109.47330 * 176.04261 * 1 2 3 25 25 H 1.09001 * 109.47071 * 53.95627 * 3 2 1 26 26 H 1.09000 * 109.47327 * 173.94881 * 3 2 1 27 27 H 0.97005 * 119.99758 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47268 * 306.04769 * 12 2 1 29 29 H 1.08999 * 109.47009 * 186.04319 * 12 2 1 30 30 H 1.07995 * 124.52294 * 0.02562 * 14 13 12 31 31 H 0.97001 * 120.00240 * 0.02562 * 19 17 16 32 32 H 1.00896 * 111.00330 * 56.04498 * 20 19 17 33 33 H 1.00902 * 111.00023 * 180.02562 * 20 19 17 34 34 H 1.08005 * 123.35231 * 180.25556 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2984 5 1 1.0741 1.5115 -2.0484 6 6 2.0270 3.3494 -1.5284 7 7 2.7122 4.0018 -0.6149 8 14 1.5822 4.1873 -3.1376 9 1 0.1049 4.2238 -3.2847 10 1 2.1145 5.5735 -3.1376 11 1 2.1738 3.4302 -4.2700 12 6 1.9954 -0.7660 1.1377 13 6 1.6368 -2.2205 0.9729 14 6 0.5027 -2.7397 1.4576 15 16 0.3921 -4.4043 1.1000 16 6 1.9448 -4.3794 0.2753 17 6 2.5898 -5.5334 -0.3581 18 8 3.6673 -5.4021 -0.9084 19 7 1.9896 -6.7398 -0.3308 20 7 2.5909 -7.8153 -0.9207 21 6 2.4510 -3.1108 0.3141 22 1 -0.3634 0.4513 0.9232 23 1 -0.3633 0.5741 -0.8525 24 1 -0.3633 -1.0251 -0.0709 25 1 1.5612 1.9273 0.8309 26 1 3.0798 1.3443 0.1083 27 1 2.9868 4.9179 -0.7769 28 1 1.5610 -0.3873 2.0629 29 1 3.0797 -0.6612 1.1757 30 1 -0.2447 -2.1790 1.9991 31 1 1.1306 -6.8444 0.1076 32 1 3.5173 -7.9608 -0.5484 33 1 2.0261 -8.6454 -0.8204 34 1 3.3965 -2.8350 -0.1291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701658722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:58 Heat of formation + Delta-G solvation = 29.836449 kcal Electronic energy + Delta-G solvation = -17687.608649 eV Core-core repulsion = 14748.266729 eV Total energy + Delta-G solvation = -2939.341920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.94582 -38.50178 -36.06295 -35.56736 -32.52842 -30.96611 -28.90446 -27.50690 -27.00807 -24.47782 -23.51852 -21.17896 -20.43096 -19.00619 -18.85885 -17.41125 -16.40970 -16.31438 -15.49704 -15.23560 -14.88627 -14.51047 -14.28701 -13.97929 -13.66905 -13.04787 -12.75008 -12.59003 -11.95478 -11.80881 -11.51881 -11.46728 -11.12931 -10.91860 -10.84986 -10.63197 -10.44613 -10.22809 -9.86109 -9.24650 -8.89315 -8.49271 -8.43613 -8.35192 -7.26794 -6.01938 -4.03239 0.50725 1.43580 1.81339 2.41633 2.55248 3.17093 3.35322 3.39179 3.42843 4.44508 4.53262 4.72054 5.03498 5.16634 5.23596 5.34314 5.53894 5.77023 5.88527 6.06175 6.17771 6.25232 6.29672 6.39257 6.58581 6.73430 6.97777 7.21773 7.26459 7.31329 7.79447 8.06773 8.17868 8.20090 8.53091 9.03956 9.60958 11.08917 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.003882 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.730072 B = 7211.743942 C = 7659.732807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.535 5.535 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.108 3.892 13 C -0.090 4.090 14 C -0.215 4.215 15 S 0.163 5.837 16 C -0.276 4.276 17 C 0.599 3.401 18 O -0.516 6.516 19 N -0.580 5.580 20 N -0.599 5.599 21 C -0.015 4.015 22 H 0.010 0.990 23 H 0.075 0.925 24 H 0.046 0.954 25 H -0.008 1.008 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.398 0.602 32 H 0.347 0.653 33 H 0.357 0.643 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 -21.133 6.849 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.259 5.259 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.023 4.023 13 C -0.103 4.103 14 C -0.353 4.353 15 S 0.430 5.570 16 C -0.397 4.397 17 C 0.385 3.615 18 O -0.391 6.391 19 N -0.325 5.325 20 N -0.226 5.226 21 C -0.049 4.049 22 H 0.028 0.972 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.010 0.990 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.185 0.815 31 H 0.235 0.765 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.701 -21.795 5.693 23.236 hybrid contribution 0.040 1.540 0.834 1.752 sum -5.661 -20.255 6.528 22.021 Atomic orbital electron populations 1.22266 0.88946 0.99616 1.00474 1.62114 1.07045 1.17713 1.39031 1.19754 0.95495 0.81162 0.96742 1.21115 1.34934 0.96889 1.01692 0.91872 1.24982 0.95273 0.97325 0.96999 1.69949 1.38322 1.11525 1.34115 0.86549 0.78664 0.78313 0.83832 1.20304 1.21360 1.20085 1.20789 1.00746 0.87422 0.93331 1.18891 0.94108 0.98001 0.99333 1.25124 1.02916 0.98957 1.08271 1.82529 1.16902 1.06471 1.51079 1.24145 1.02069 0.98321 1.15166 1.16756 0.84765 0.80474 0.79522 1.90854 1.21045 1.83619 1.43569 1.44528 1.22910 1.05833 1.59278 1.59890 1.05766 1.01181 1.55733 1.20721 1.00503 0.89367 0.94291 0.97194 0.90666 0.93541 0.99048 0.95046 0.92858 0.94733 0.90031 0.81541 0.76483 0.83730 0.82938 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.02 60.06 0.54 1.23 16 2 N -0.53 -11.48 4.74 -245.82 -1.17 -12.65 16 3 C 0.19 5.02 4.72 -4.98 -0.02 4.99 16 4 C -0.51 -14.34 8.46 -34.44 -0.29 -14.63 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.11 1.89 5.22 -4.97 -0.03 1.86 16 13 C -0.09 -1.35 4.77 -106.45 -0.51 -1.86 16 14 C -0.21 -2.64 9.05 29.18 0.26 -2.38 16 15 S 0.16 1.62 22.16 -107.50 -2.38 -0.76 16 16 C -0.28 -3.67 6.45 -36.79 -0.24 -3.91 16 17 C 0.60 8.33 7.85 -12.89 -0.10 8.23 16 18 O -0.52 -9.22 17.06 5.19 0.09 -9.13 16 19 N -0.58 -5.68 6.47 30.24 0.20 -5.48 16 20 N -0.60 -5.03 10.03 60.35 0.61 -4.43 16 21 C -0.01 -0.22 9.80 -40.44 -0.40 -0.62 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.07 1.58 6.76 -51.92 -0.35 1.23 16 24 H 0.05 0.78 6.23 -51.93 -0.32 0.45 16 25 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 26 H 0.03 0.87 7.93 -51.93 -0.41 0.45 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 30 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.40 2.73 7.94 -185.15 -1.47 1.26 16 32 H 0.35 2.79 9.00 -181.37 -1.63 1.16 16 33 H 0.36 1.55 9.21 -181.36 -1.67 -0.12 16 34 H 0.16 2.50 8.06 -52.48 -0.42 2.08 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -33.90 306.30 -11.09 -44.99 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.89 Total: -2.32 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.87 Total: -5.59 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.37 Total: -48.62 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.38 Total: -0.76 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.90 -11.09 -44.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701658722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.825 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds