Wall clock time and date at job start Mon Mar 30 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00323 * 2 1 4 4 C 1.50694 * 109.47423 * 293.95150 * 3 2 1 5 5 H 1.08001 * 119.99723 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00361 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99763 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00397 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46730 * 60.00193 * 8 6 4 10 10 H 1.48493 * 109.47280 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46885 * 300.00767 * 8 6 4 12 12 C 1.46906 * 110.99751 * 123.95259 * 2 1 3 13 13 C 1.50709 * 109.46795 * 66.04542 * 12 2 1 14 14 C 1.33815 * 122.44699 * 269.97612 * 13 12 2 15 15 S 1.70616 * 110.95046 * 179.78500 * 14 13 12 16 16 C 1.75833 * 91.56312 * 0.30804 * 15 14 13 17 17 C 1.46586 * 125.45770 * 179.97438 * 16 15 14 18 18 O 1.21700 * 120.00341 * 179.69383 * 17 16 15 19 19 N 1.34779 * 119.99683 * 359.68719 * 17 16 15 20 20 N 1.36605 * 119.99744 * 180.02562 * 19 17 16 21 21 C 1.36641 * 109.08309 * 359.69649 * 16 15 14 22 22 H 1.08999 * 109.47250 * 296.05262 * 1 2 3 23 23 H 1.09010 * 109.46776 * 56.04127 * 1 2 3 24 24 H 1.08990 * 109.47330 * 176.04261 * 1 2 3 25 25 H 1.09001 * 109.47071 * 53.95627 * 3 2 1 26 26 H 1.09000 * 109.47327 * 173.94881 * 3 2 1 27 27 H 0.97005 * 119.99758 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47268 * 306.04769 * 12 2 1 29 29 H 1.08999 * 109.47009 * 186.04319 * 12 2 1 30 30 H 1.07995 * 124.52294 * 0.02562 * 14 13 12 31 31 H 0.97001 * 120.00240 * 0.02562 * 19 17 16 32 32 H 1.00896 * 111.00330 * 56.04498 * 20 19 17 33 33 H 1.00902 * 111.00023 * 180.02562 * 20 19 17 34 34 H 1.08005 * 123.35231 * 180.25556 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2984 5 1 1.0741 1.5115 -2.0484 6 6 2.0270 3.3494 -1.5284 7 7 2.7122 4.0018 -0.6149 8 14 1.5822 4.1873 -3.1376 9 1 0.1049 4.2238 -3.2847 10 1 2.1145 5.5735 -3.1376 11 1 2.1738 3.4302 -4.2700 12 6 1.9954 -0.7660 1.1377 13 6 1.6368 -2.2205 0.9729 14 6 0.5027 -2.7397 1.4576 15 16 0.3921 -4.4043 1.1000 16 6 1.9448 -4.3794 0.2753 17 6 2.5898 -5.5334 -0.3581 18 8 3.6673 -5.4021 -0.9084 19 7 1.9896 -6.7398 -0.3308 20 7 2.5909 -7.8153 -0.9207 21 6 2.4510 -3.1108 0.3141 22 1 -0.3634 0.4513 0.9232 23 1 -0.3633 0.5741 -0.8525 24 1 -0.3633 -1.0251 -0.0709 25 1 1.5612 1.9273 0.8309 26 1 3.0798 1.3443 0.1083 27 1 2.9868 4.9179 -0.7769 28 1 1.5610 -0.3873 2.0629 29 1 3.0797 -0.6612 1.1757 30 1 -0.2447 -2.1790 1.9991 31 1 1.1306 -6.8444 0.1076 32 1 3.5173 -7.9608 -0.5484 33 1 2.0261 -8.6454 -0.8204 34 1 3.3965 -2.8350 -0.1291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701658722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:58 Heat of formation + Delta-G solvation = 3.111709 kcal Electronic energy + Delta-G solvation = -17688.767520 eV Core-core repulsion = 14748.266729 eV Total energy + Delta-G solvation = -2940.500791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96990 -39.71481 -37.40691 -36.75583 -34.61925 -32.06947 -30.05688 -29.02116 -28.65456 -26.00130 -24.92019 -22.62960 -21.79532 -20.11984 -19.82872 -18.47827 -18.28978 -17.31562 -16.84969 -16.48029 -16.30447 -16.07280 -15.65647 -15.30681 -15.03793 -14.45481 -13.93956 -13.88103 -13.77683 -13.22402 -13.08337 -12.81673 -12.59387 -12.54678 -12.35309 -12.26266 -12.08017 -11.73200 -11.37398 -11.27847 -10.61217 -9.93171 -9.39150 -9.20204 -8.97476 -8.20082 -6.30224 -0.53200 0.48771 0.81623 1.29422 1.41175 1.44737 1.52515 1.73026 2.09665 2.41315 3.12316 3.51094 3.61667 3.99436 4.08401 4.13610 4.37257 4.49460 4.58475 4.69989 4.77918 4.81773 5.07553 5.18452 5.21211 5.30587 5.43674 5.63882 5.65450 6.05031 6.13738 6.33659 6.50303 6.62230 6.85591 7.33537 7.39353 8.90591 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.028690 B = 0.003882 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.730072 B = 7211.743942 C = 7659.732807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.548 5.548 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.271 1.271 12 C 0.111 3.889 13 C -0.112 4.112 14 C -0.217 4.217 15 S 0.287 5.713 16 C -0.293 4.293 17 C 0.591 3.409 18 O -0.568 6.568 19 N -0.560 5.560 20 N -0.611 5.611 21 C -0.042 4.042 22 H 0.017 0.983 23 H 0.053 0.947 24 H 0.077 0.923 25 H -0.032 1.032 26 H 0.003 0.997 27 H 0.265 0.735 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.188 0.812 31 H 0.415 0.585 32 H 0.352 0.648 33 H 0.380 0.620 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 -23.202 6.919 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.272 5.272 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.196 1.196 12 C -0.019 4.019 13 C -0.125 4.125 14 C -0.356 4.356 15 S 0.556 5.444 16 C -0.415 4.415 17 C 0.378 3.622 18 O -0.447 6.447 19 N -0.304 5.304 20 N -0.242 5.242 21 C -0.077 4.077 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.096 0.904 25 H -0.015 1.015 26 H 0.021 0.979 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.206 0.794 31 H 0.255 0.745 32 H 0.168 0.832 33 H 0.198 0.802 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.373 -23.941 5.790 26.016 hybrid contribution 0.774 1.989 0.887 2.311 sum -7.599 -21.952 6.677 24.171 Atomic orbital electron populations 1.22232 0.87378 1.01222 0.99870 1.61995 1.08556 1.15099 1.41557 1.19386 0.93689 0.83590 0.95149 1.21441 1.34970 0.97484 1.02444 0.92040 1.25900 0.94997 0.98034 1.00661 1.70076 1.39283 1.11933 1.36193 0.85450 0.78932 0.77162 0.79165 1.19003 1.20727 1.19648 1.20709 0.99890 0.89073 0.92224 1.18482 0.95789 0.96171 1.02086 1.25484 1.01983 1.01310 1.06810 1.82064 1.12318 1.02963 1.47088 1.24245 1.04375 0.97407 1.15433 1.16922 0.84383 0.81592 0.79322 1.90823 1.23319 1.84528 1.46026 1.44278 1.23077 1.05199 1.57893 1.59796 1.06620 1.01747 1.56014 1.20538 1.00377 0.90750 0.96006 0.96474 0.92770 0.90416 1.01463 0.97914 0.92649 0.93821 0.91510 0.79437 0.74485 0.83229 0.80212 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.02 127.69 1.15 2.71 16 2 N -0.55 -24.11 4.74 -931.63 -4.42 -28.53 16 3 C 0.21 11.29 4.72 85.56 0.40 11.70 16 4 C -0.53 -30.41 8.46 25.60 0.22 -30.20 16 5 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.12 5.46 84.65 0.46 0.58 16 7 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 8 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.11 3.99 5.22 85.56 0.45 4.44 16 13 C -0.11 -3.29 4.77 -21.05 -0.10 -3.39 16 14 C -0.22 -4.67 9.05 66.81 0.60 -4.06 16 15 S 0.29 4.51 22.16 -56.49 -1.25 3.26 16 16 C -0.29 -7.40 6.45 24.08 0.16 -7.25 16 17 C 0.59 15.95 7.85 86.42 0.68 16.63 16 18 O -0.57 -20.78 17.06 -4.35 -0.07 -20.86 16 19 N -0.56 -9.61 6.47 -176.45 -1.14 -10.75 16 20 N -0.61 -8.98 10.03 37.02 0.37 -8.61 16 21 C -0.04 -1.30 9.80 21.71 0.21 -1.09 16 22 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.05 2.26 6.76 -2.38 -0.02 2.24 16 24 H 0.08 2.42 6.23 -2.39 -0.01 2.41 16 25 H -0.03 -1.87 8.12 -2.39 -0.02 -1.88 16 26 H 0.00 0.16 7.93 -2.39 -0.02 0.14 16 27 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 28 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 29 H 0.07 2.53 7.92 -2.39 -0.02 2.51 16 30 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.41 4.11 7.94 -215.49 -1.71 2.40 16 32 H 0.35 5.15 9.00 -210.56 -1.90 3.25 16 33 H 0.38 2.20 9.21 -210.55 -1.94 0.26 16 34 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -76.40 306.30 -4.36 -80.76 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.39 Total: 4.26 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 4.23 Total: -9.92 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -4.90 Total: -104.61 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.07 Total: -20.86 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.25 Total: 3.26 kcal Total: -76.40 -4.36 -80.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701658722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.876 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds