Wall clock time and date at job start Mon Mar 30 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47897 * 110.99555 * 2 1 4 4 C 1.54000 * 107.05672 * 145.84575 * 3 2 1 5 5 C 1.54598 * 105.22213 * 358.72428 * 4 3 2 6 6 C 1.48533 * 111.00245 * 117.39949 * 2 1 3 7 7 H 1.09003 * 110.66452 * 318.71648 * 6 2 1 8 8 C 1.50697 * 110.66703 * 81.67494 * 6 2 1 9 9 N 1.29952 * 126.28657 * 43.57752 * 8 6 2 10 10 O 1.21297 * 110.24877 * 179.97438 * 9 8 6 11 11 C 1.33641 * 109.81321 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.55074 * 180.02562 * 11 10 9 13 13 S 1.80998 * 109.47260 * 270.02538 * 12 11 10 14 14 C 1.76196 * 100.00472 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99727 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00147 * 179.97438 * 14 13 12 17 17 N 1.31629 * 119.99818 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 119.99936 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46983 * 90.00237 * 18 16 14 20 20 H 1.48506 * 109.46882 * 209.99845 * 18 16 14 21 21 H 1.48499 * 109.47327 * 329.99924 * 18 16 14 22 22 N 1.31135 * 106.89964 * 359.76939 * 11 10 9 23 23 H 1.09001 * 109.46958 * 59.87359 * 1 2 3 24 24 H 1.08998 * 109.46822 * 179.87272 * 1 2 3 25 25 H 1.09001 * 109.47005 * 299.86748 * 1 2 3 26 26 H 1.09000 * 109.91881 * 26.49521 * 3 2 1 27 27 H 1.09002 * 110.08496 * 265.28456 * 3 2 1 28 28 H 1.09002 * 110.31026 * 117.69182 * 4 3 2 29 29 H 1.09000 * 110.30915 * 239.76211 * 4 3 2 30 30 H 1.09003 * 110.72246 * 96.45403 * 5 4 3 31 31 H 1.09003 * 110.72391 * 219.72762 * 5 4 3 32 32 H 1.09005 * 109.47613 * 30.02161 * 12 11 10 33 33 H 1.09002 * 109.47563 * 150.02193 * 12 11 10 34 34 H 0.97001 * 119.99821 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8266 5 6 3.4504 -0.0921 1.3175 6 6 2.0014 -0.6381 1.2311 7 1 1.4238 -0.3324 2.1035 8 6 2.0015 -2.1389 1.0949 9 7 2.3778 -2.8165 0.0518 10 8 2.2579 -4.0058 0.2580 11 6 1.7797 -4.2059 1.4898 12 6 1.4880 -5.5367 2.1339 13 16 -0.2215 -6.0157 1.7816 14 6 -0.2877 -7.5592 2.6288 15 1 0.5830 -7.9256 3.1523 16 6 -1.4588 -8.3042 2.6234 17 7 -1.5080 -9.4576 3.2559 18 14 -2.9649 -7.6702 1.7186 19 1 -2.9416 -8.1579 0.3161 20 1 -4.1921 -8.1635 2.3938 21 1 -2.9585 -6.1852 1.7265 22 7 1.6181 -3.0233 2.0328 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3633 -1.0277 -0.0023 25 1 -0.3633 0.5118 0.8912 26 1 1.2758 2.0561 0.4572 27 1 2.2117 1.7001 -1.0203 28 1 4.1470 1.6456 0.2024 29 1 3.2142 2.0442 1.6757 30 1 4.1138 -0.6534 0.6594 31 1 3.8132 -0.1172 2.3451 32 1 2.1662 -6.2905 1.7340 33 1 1.6282 -5.4572 3.2120 34 1 -2.3263 -9.9784 3.2518 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703969037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:00 Heat of formation + Delta-G solvation = 71.613350 kcal Electronic energy + Delta-G solvation = -17935.522225 eV Core-core repulsion = 14997.991888 eV Total energy + Delta-G solvation = -2937.530337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.28991 -39.31785 -35.53546 -33.23323 -32.56667 -32.44570 -29.51613 -28.42451 -25.90857 -25.76073 -23.80884 -22.81576 -21.20551 -20.23796 -18.03353 -17.78891 -17.23403 -16.14183 -15.87061 -15.15298 -14.75053 -14.44799 -14.24130 -13.92735 -13.73859 -13.22163 -12.93178 -12.72542 -12.26718 -12.07237 -12.00627 -11.69534 -11.62090 -11.51103 -11.25119 -11.11549 -10.97237 -10.78106 -10.71375 -10.03964 -9.51304 -9.13006 -8.77096 -8.76018 -7.14691 -6.40186 -4.16729 1.31479 2.26202 2.89468 3.10986 3.23447 3.37253 3.39939 3.45452 3.95660 4.19728 4.25309 4.34773 4.48999 4.62761 4.66404 4.92869 4.99134 5.08086 5.18781 5.24407 5.33718 5.41375 5.51726 5.54840 5.63690 5.72626 5.77268 5.83506 5.89087 6.05023 6.22461 6.53056 6.70542 7.82758 8.31946 8.45908 9.03876 10.68707 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037162 B = 0.004154 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.277587 B = 6738.438732 C = 7182.912856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.512 5.512 3 C 0.038 3.962 4 C -0.129 4.129 5 C -0.113 4.113 6 C 0.157 3.843 7 H 0.085 0.915 8 C 0.174 3.826 9 N -0.362 5.362 10 O 0.079 5.921 11 C 0.217 3.783 12 C -0.011 4.011 13 S -0.165 6.165 14 C -0.512 4.512 15 H 0.096 0.904 16 C 0.099 3.901 17 N -0.874 5.874 18 Si 0.856 3.144 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.238 1.238 22 N -0.478 5.478 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.435 19.429 -4.176 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.237 5.237 3 C -0.090 4.090 4 C -0.167 4.167 5 C -0.152 4.152 6 C 0.047 3.953 7 H 0.103 0.897 8 C -0.100 4.100 9 N -0.069 5.069 10 O 0.019 5.981 11 C -0.004 4.004 12 C -0.160 4.160 13 S 0.060 5.940 14 C -0.660 4.660 15 H 0.114 0.886 16 C -0.111 4.111 17 N -0.509 5.509 18 Si 0.681 3.319 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.162 1.162 22 N -0.213 5.213 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.872 20.188 -5.597 22.048 hybrid contribution -0.321 -0.439 1.112 1.238 sum 6.551 19.749 -4.485 21.285 Atomic orbital electron populations 1.22544 0.86957 1.02749 1.00966 1.64498 1.08767 1.14907 1.35492 1.22860 0.95864 0.89068 1.01164 1.22401 0.98006 0.96515 0.99783 1.22546 0.94553 0.95766 1.02315 1.20841 0.97484 0.83836 0.93121 0.89695 1.25204 0.99872 0.98621 0.86305 1.74624 1.20709 0.88845 1.22739 1.85348 1.60276 1.20365 1.32064 1.28152 0.92786 0.97063 0.82411 1.21678 1.03505 0.88014 1.02768 1.84642 1.07799 1.29206 1.72351 1.22088 1.03461 1.02090 1.38318 0.88619 1.24691 0.98241 0.93941 0.94233 1.69917 1.28583 1.11936 1.40513 0.86759 0.82623 0.81886 0.80669 1.19046 1.19665 1.16211 1.71895 1.21589 0.98231 1.29625 0.90804 0.91262 0.94873 0.93307 0.89813 0.90439 0.91005 0.90132 0.90094 0.87242 0.86477 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.29 60.07 0.56 0.75 16 2 N -0.51 -6.24 5.23 -232.10 -1.21 -7.45 16 3 C 0.04 0.34 6.70 -2.75 -0.02 0.32 16 4 C -0.13 -1.01 6.92 -25.37 -0.18 -1.18 16 5 C -0.11 -1.16 6.51 -24.79 -0.16 -1.32 16 6 C 0.16 2.02 2.85 -66.86 -0.19 1.83 16 7 H 0.09 1.05 7.96 -51.93 -0.41 0.64 16 8 C 0.17 2.85 6.90 -156.37 -1.08 1.77 16 9 N -0.36 -6.37 12.16 30.90 0.38 -5.99 16 10 O 0.08 1.42 11.31 18.11 0.20 1.63 16 11 C 0.22 3.90 7.77 -13.06 -0.10 3.80 16 12 C -0.01 -0.20 6.30 36.00 0.23 0.02 16 13 S -0.17 -3.86 19.39 -107.50 -2.08 -5.95 16 14 C -0.51 -13.94 10.04 30.94 0.31 -13.63 16 15 H 0.10 2.71 8.03 -52.48 -0.42 2.29 16 16 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 17 N -0.87 -25.37 13.97 55.49 0.78 -24.59 16 18 Si 0.86 20.68 27.74 -169.99 -4.71 15.96 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.24 -5.69 6.74 56.52 0.38 -5.31 16 22 N -0.48 -8.61 11.55 -9.87 -0.11 -8.72 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 25 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 26 H 0.05 0.38 7.73 -51.93 -0.40 -0.03 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.11 1.84 8.14 -51.91 -0.42 1.41 16 33 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -30.24 304.17 -7.52 -37.76 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.60 Total: -2.24 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.73 Total: -4.99 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.18 Total: -46.76 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.63 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.96 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.08 Total: -5.95 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.24 -7.52 -37.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703969037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.371 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds