Wall clock time and date at job start Mon Mar 30 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47897 * 110.99555 * 2 1 4 4 C 1.54000 * 107.05672 * 145.84575 * 3 2 1 5 5 C 1.54598 * 105.22213 * 358.72428 * 4 3 2 6 6 C 1.48533 * 111.00245 * 117.39949 * 2 1 3 7 7 H 1.09003 * 110.66452 * 318.71648 * 6 2 1 8 8 C 1.50697 * 110.66703 * 81.67494 * 6 2 1 9 9 N 1.29952 * 126.28657 * 43.57752 * 8 6 2 10 10 O 1.21297 * 110.24877 * 179.97438 * 9 8 6 11 11 C 1.33641 * 109.81321 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.55074 * 180.02562 * 11 10 9 13 13 S 1.80998 * 109.47260 * 270.02538 * 12 11 10 14 14 C 1.76196 * 100.00472 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99727 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00147 * 179.97438 * 14 13 12 17 17 N 1.31629 * 119.99818 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 119.99936 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46983 * 90.00237 * 18 16 14 20 20 H 1.48506 * 109.46882 * 209.99845 * 18 16 14 21 21 H 1.48499 * 109.47327 * 329.99924 * 18 16 14 22 22 N 1.31135 * 106.89964 * 359.76939 * 11 10 9 23 23 H 1.09001 * 109.46958 * 59.87359 * 1 2 3 24 24 H 1.08998 * 109.46822 * 179.87272 * 1 2 3 25 25 H 1.09001 * 109.47005 * 299.86748 * 1 2 3 26 26 H 1.09000 * 109.91881 * 26.49521 * 3 2 1 27 27 H 1.09002 * 110.08496 * 265.28456 * 3 2 1 28 28 H 1.09002 * 110.31026 * 117.69182 * 4 3 2 29 29 H 1.09000 * 110.30915 * 239.76211 * 4 3 2 30 30 H 1.09003 * 110.72246 * 96.45403 * 5 4 3 31 31 H 1.09003 * 110.72391 * 219.72762 * 5 4 3 32 32 H 1.09005 * 109.47613 * 30.02161 * 12 11 10 33 33 H 1.09002 * 109.47563 * 150.02193 * 12 11 10 34 34 H 0.97001 * 119.99821 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8266 5 6 3.4504 -0.0921 1.3175 6 6 2.0014 -0.6381 1.2311 7 1 1.4238 -0.3324 2.1035 8 6 2.0015 -2.1389 1.0949 9 7 2.3778 -2.8165 0.0518 10 8 2.2579 -4.0058 0.2580 11 6 1.7797 -4.2059 1.4898 12 6 1.4880 -5.5367 2.1339 13 16 -0.2215 -6.0157 1.7816 14 6 -0.2877 -7.5592 2.6288 15 1 0.5830 -7.9256 3.1523 16 6 -1.4588 -8.3042 2.6234 17 7 -1.5080 -9.4576 3.2559 18 14 -2.9649 -7.6702 1.7186 19 1 -2.9416 -8.1579 0.3161 20 1 -4.1921 -8.1635 2.3938 21 1 -2.9585 -6.1852 1.7265 22 7 1.6181 -3.0233 2.0328 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3633 -1.0277 -0.0023 25 1 -0.3633 0.5118 0.8912 26 1 1.2758 2.0561 0.4572 27 1 2.2117 1.7001 -1.0203 28 1 4.1470 1.6456 0.2024 29 1 3.2142 2.0442 1.6757 30 1 4.1138 -0.6534 0.6594 31 1 3.8132 -0.1172 2.3451 32 1 2.1662 -6.2905 1.7340 33 1 1.6282 -5.4572 3.2120 34 1 -2.3263 -9.9784 3.2518 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703969037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:00 Heat of formation + Delta-G solvation = 49.606742 kcal Electronic energy + Delta-G solvation = -17936.476503 eV Core-core repulsion = 14997.991888 eV Total energy + Delta-G solvation = -2938.484615 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.66675 -40.16730 -36.88802 -34.70805 -34.59004 -33.23291 -30.55419 -29.79234 -27.88989 -26.75227 -25.03704 -24.07094 -21.91487 -21.39291 -19.89174 -19.21255 -18.60615 -17.17284 -16.99402 -16.88254 -16.27828 -15.90336 -15.36818 -14.93506 -14.84989 -14.73362 -14.44800 -13.59051 -13.49560 -13.41441 -13.24553 -13.10622 -13.02346 -12.86266 -12.55351 -12.33394 -12.15110 -12.11953 -11.89678 -11.56832 -11.18913 -11.07362 -10.58423 -9.60283 -9.09802 -8.52518 -6.27449 -0.15575 0.84693 1.23833 1.31879 1.45824 1.56867 1.77258 2.21815 2.30163 2.58864 2.85982 2.90160 3.09972 3.52616 3.65725 3.86030 3.98930 4.10313 4.22912 4.33434 4.36340 4.43844 4.47922 4.63611 4.72247 4.79764 4.85364 4.86139 4.95398 5.04548 5.22432 5.68561 5.70239 5.89175 6.13180 6.90817 7.08172 8.59709 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037162 B = 0.004154 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.277587 B = 6738.438732 C = 7182.912856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.532 5.532 3 C 0.037 3.963 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.150 3.850 7 H 0.090 0.910 8 C 0.180 3.820 9 N -0.375 5.375 10 O 0.072 5.928 11 C 0.213 3.787 12 C 0.004 3.996 13 S -0.179 6.179 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.049 3.951 17 N -0.913 5.913 18 Si 0.912 3.088 19 H -0.261 1.261 20 H -0.260 1.260 21 H -0.235 1.235 22 N -0.489 5.489 23 H 0.089 0.911 24 H 0.038 0.962 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 21.895 -4.639 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.258 5.258 3 C -0.090 4.090 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.040 3.960 7 H 0.108 0.892 8 C -0.094 4.094 9 N -0.084 5.084 10 O 0.015 5.985 11 C -0.008 4.008 12 C -0.145 4.145 13 S 0.047 5.953 14 C -0.668 4.668 15 H 0.089 0.911 16 C -0.157 4.157 17 N -0.550 5.550 18 Si 0.734 3.266 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.159 1.159 22 N -0.224 5.224 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.017 22.653 -6.068 24.479 hybrid contribution -0.242 -1.133 1.259 1.711 sum 6.775 21.520 -4.809 23.068 Atomic orbital electron populations 1.22506 0.86926 1.01136 1.02362 1.64471 1.09054 1.17070 1.35174 1.22968 0.96604 0.87384 1.02062 1.22411 0.97879 0.95007 1.00514 1.22559 0.92396 0.97067 1.02884 1.21100 0.99448 0.81706 0.93748 0.89197 1.25897 0.98103 1.00099 0.85276 1.74620 1.21679 0.88739 1.23322 1.85338 1.60486 1.20762 1.31917 1.27952 0.93351 0.96864 0.82653 1.21588 1.00415 0.88865 1.03618 1.84417 1.12119 1.26893 1.71896 1.22248 1.02704 1.03853 1.38031 0.91095 1.25526 1.01061 0.94121 0.95004 1.70001 1.29735 1.13243 1.42068 0.85911 0.79557 0.81478 0.79680 1.18522 1.18460 1.15855 1.71912 1.21674 0.98514 1.30325 0.89264 0.94304 0.93627 0.91735 0.89159 0.89219 0.88935 0.91714 0.88861 0.85388 0.85514 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.29 127.69 1.19 1.60 16 2 N -0.53 -12.00 5.23 -888.24 -4.65 -16.65 16 3 C 0.04 0.54 6.70 86.45 0.58 1.12 16 4 C -0.12 -1.48 6.92 31.48 0.22 -1.26 16 5 C -0.11 -2.01 6.51 31.85 0.21 -1.81 16 6 C 0.15 3.61 2.85 44.57 0.13 3.74 16 7 H 0.09 2.06 7.96 -2.39 -0.02 2.04 16 8 C 0.18 5.74 6.90 138.46 0.95 6.70 16 9 N -0.37 -12.96 12.16 -60.32 -0.73 -13.70 16 10 O 0.07 2.56 11.31 74.85 0.85 3.40 16 11 C 0.21 7.51 7.77 88.38 0.69 8.19 16 12 C 0.00 0.14 6.30 71.23 0.45 0.59 16 13 S -0.18 -8.27 19.39 -56.49 -1.10 -9.37 16 14 C -0.52 -28.61 10.04 67.95 0.68 -27.93 16 15 H 0.07 4.12 8.03 -2.91 -0.02 4.10 16 16 C 0.05 2.74 5.50 84.86 0.47 3.21 16 17 N -0.91 -53.65 13.97 21.65 0.30 -53.35 16 18 Si 0.91 42.42 27.74 68.60 1.90 44.32 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.23 -10.70 6.74 99.48 0.67 -10.03 16 22 N -0.49 -17.15 11.55 -303.20 -3.50 -20.65 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.05 8.00 -2.39 -0.02 1.03 16 25 H 0.05 0.84 8.00 -2.39 -0.02 0.82 16 26 H 0.06 0.76 7.73 -2.39 -0.02 0.75 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.39 8.05 -2.39 -0.02 1.37 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.13 4.18 8.14 -2.39 -0.02 4.16 16 33 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 34 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -64.60 304.17 -0.31 -64.92 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.06 Total: 6.93 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.56 Total: -5.85 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -8.58 Total: -104.35 kcal Atomic # 8 Polarization: 2.56 SS G_CDS: 0.85 Total: 3.40 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.90 Total: 44.32 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.10 Total: -9.37 kcal Total: -64.60 -0.31 -64.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703969037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.524 kcal (2) G-P(sol) polarization free energy of solvation -64.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds