Wall clock time and date at job start Mon Mar 30 2020 04:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47905 * 111.00050 * 2 1 4 4 C 1.53991 * 107.22505 * 214.25344 * 3 2 1 5 5 C 1.54594 * 105.14285 * 1.12969 * 4 3 2 6 6 C 1.48813 * 111.18681 * 242.66666 * 2 1 3 7 7 H 1.09002 * 110.66250 * 40.99873 * 6 2 1 8 8 C 1.50705 * 110.69755 * 278.02332 * 6 2 1 9 9 N 1.29944 * 126.28524 * 321.05480 * 8 6 2 10 10 O 1.21301 * 110.24823 * 179.97438 * 9 8 6 11 11 C 1.33639 * 109.81159 * 359.97438 * 10 9 8 12 12 C 1.50708 * 126.54785 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.46813 * 269.96871 * 12 11 10 14 14 C 1.76207 * 99.99891 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99665 * 0.02562 * 14 13 12 16 16 C 1.38791 * 119.99951 * 179.97438 * 14 13 12 17 17 N 1.31629 * 120.00184 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00108 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47325 * 89.99745 * 18 16 14 20 20 H 1.48501 * 109.46929 * 209.99901 * 18 16 14 21 21 H 1.48498 * 109.46998 * 329.99594 * 18 16 14 22 22 N 1.31129 * 106.89813 * 359.76546 * 11 10 9 23 23 H 1.09003 * 109.47065 * 59.87544 * 1 2 3 24 24 H 1.08999 * 109.47271 * 179.87278 * 1 2 3 25 25 H 1.09003 * 109.47401 * 299.87547 * 1 2 3 26 26 H 1.09002 * 109.91668 * 94.80258 * 3 2 1 27 27 H 1.09002 * 109.91761 * 333.70433 * 3 2 1 28 28 H 1.09005 * 110.30467 * 120.04331 * 4 3 2 29 29 H 1.08997 * 110.31304 * 242.20852 * 4 3 2 30 30 H 1.08999 * 110.72754 * 140.31381 * 5 4 3 31 31 H 1.08999 * 110.72080 * 263.59761 * 5 4 3 32 32 H 1.08991 * 109.47091 * 29.97159 * 12 11 10 33 33 H 1.08997 * 109.47138 * 149.97200 * 12 11 10 34 34 H 0.96996 * 120.00641 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2974 1.3708 -0.8279 5 6 3.4527 -0.0871 -1.3180 6 6 2.0068 -0.6371 -1.2326 7 1 1.4281 -0.3351 -2.1056 8 6 2.0158 -2.1379 -1.0960 9 7 2.3154 -2.8109 -0.0255 10 8 2.2276 -4.0016 -0.2399 11 6 1.8516 -4.2074 -1.5057 12 6 1.6281 -5.5417 -2.1698 13 16 3.1755 -6.1104 -2.9170 14 6 2.6398 -7.6436 -3.6005 15 1 1.6135 -7.9583 -3.4822 16 6 3.5366 -8.4462 -4.2918 17 7 3.1367 -9.5918 -4.8020 18 14 5.3116 -7.9015 -4.4969 19 1 6.1195 -8.4074 -3.3583 20 1 5.8527 -8.4458 -5.7682 21 1 5.3738 -6.4181 -4.5274 22 7 1.7089 -3.0266 -2.0577 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 -1.0276 -0.0023 25 1 -0.3634 0.5119 0.8911 26 1 2.2122 1.6967 1.0212 27 1 1.2744 2.0567 -0.4540 28 1 3.2096 2.0482 -1.6774 29 1 4.1459 1.6528 -0.2044 30 1 3.8148 -0.1121 -2.3457 31 1 4.1176 -0.6465 -0.6599 32 1 1.2956 -6.2663 -1.4267 33 1 0.8671 -5.4395 -2.9435 34 1 3.7632 -10.1526 -5.2854 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703969041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:04 Heat of formation + Delta-G solvation = 71.673573 kcal Electronic energy + Delta-G solvation = -17906.372400 eV Core-core repulsion = 14968.844674 eV Total energy + Delta-G solvation = -2937.527726 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.28849 -39.31049 -35.53643 -33.22962 -32.56526 -32.46415 -29.51221 -28.42659 -25.94857 -25.75934 -23.81105 -22.80484 -21.19292 -20.24941 -18.00392 -17.82086 -17.22288 -16.15449 -15.87329 -15.15469 -14.75476 -14.41530 -14.26814 -13.93874 -13.77392 -13.23083 -12.93138 -12.73507 -12.30117 -12.08455 -11.99392 -11.70920 -11.61489 -11.51472 -11.22323 -11.11158 -10.93730 -10.84673 -10.68132 -10.03664 -9.50744 -9.12815 -8.78899 -8.77012 -7.14460 -6.39952 -4.16582 1.31596 2.27747 2.88952 3.11154 3.23670 3.35064 3.37536 3.47218 3.94463 4.20154 4.27372 4.34695 4.49662 4.62702 4.67213 4.92536 4.99316 5.05728 5.13321 5.21638 5.34028 5.39765 5.52736 5.58392 5.62911 5.64399 5.79021 5.84241 5.90960 6.04999 6.22558 6.49617 6.67732 7.82930 8.32133 8.46239 9.04074 10.68945 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.038491 B = 0.004059 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.264253 B = 6897.235475 C = 7328.439336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.512 5.512 3 C 0.038 3.962 4 C -0.129 4.129 5 C -0.114 4.114 6 C 0.158 3.842 7 H 0.085 0.915 8 C 0.173 3.827 9 N -0.362 5.362 10 O 0.079 5.921 11 C 0.216 3.784 12 C -0.011 4.011 13 S -0.165 6.165 14 C -0.512 4.512 15 H 0.096 0.904 16 C 0.099 3.901 17 N -0.874 5.874 18 Si 0.856 3.144 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.238 1.238 22 N -0.478 5.478 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 19.744 7.508 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.237 5.237 3 C -0.089 4.089 4 C -0.167 4.167 5 C -0.153 4.153 6 C 0.048 3.952 7 H 0.103 0.897 8 C -0.101 4.101 9 N -0.069 5.069 10 O 0.019 5.981 11 C -0.004 4.004 12 C -0.160 4.160 13 S 0.061 5.939 14 C -0.660 4.660 15 H 0.114 0.886 16 C -0.111 4.111 17 N -0.510 5.510 18 Si 0.681 3.319 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.162 1.162 22 N -0.213 5.213 23 H 0.050 0.950 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.247 20.451 8.293 22.103 hybrid contribution -0.784 -0.433 -0.955 1.309 sum -2.031 20.018 7.337 21.417 Atomic orbital electron populations 1.22519 0.87198 1.02398 1.00947 1.64562 1.08520 1.14986 1.35594 1.22860 0.95944 0.88963 1.01182 1.22404 0.97937 0.96587 0.99768 1.22524 0.94517 0.95631 1.02606 1.20864 0.97606 0.83819 0.92931 0.89688 1.25207 1.00704 0.98610 0.85545 1.74638 1.20097 0.88801 1.23315 1.85351 1.62304 1.20257 1.30167 1.28155 0.93260 0.97056 0.81950 1.21676 1.04400 0.87863 1.02020 1.84638 1.11025 1.27911 1.70361 1.22088 1.01127 1.01881 1.40877 0.88633 1.24690 0.98976 0.93870 0.93563 1.69913 1.36088 1.10675 1.34288 0.86758 0.84558 0.81732 0.78900 1.19048 1.19666 1.16172 1.71884 1.21920 0.98168 1.29372 0.94969 0.91534 0.90822 0.89837 0.93333 0.90964 0.90385 0.89889 0.90102 0.87259 0.86513 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.31 60.06 0.56 0.74 16 2 N -0.51 -5.99 5.23 -231.97 -1.21 -7.20 16 3 C 0.04 0.33 6.69 -2.75 -0.02 0.31 16 4 C -0.13 -1.05 6.93 -25.38 -0.18 -1.23 16 5 C -0.11 -1.26 6.49 -24.87 -0.16 -1.42 16 6 C 0.16 2.03 2.86 -66.78 -0.19 1.84 16 7 H 0.09 1.03 7.97 -51.93 -0.41 0.62 16 8 C 0.17 2.84 6.93 -156.38 -1.08 1.76 16 9 N -0.36 -6.37 12.14 30.90 0.37 -5.99 16 10 O 0.08 1.42 11.31 18.11 0.20 1.62 16 11 C 0.22 3.91 7.77 -13.05 -0.10 3.80 16 12 C -0.01 -0.20 6.30 36.01 0.23 0.03 16 13 S -0.16 -3.84 19.39 -107.50 -2.08 -5.93 16 14 C -0.51 -13.94 10.04 30.94 0.31 -13.63 16 15 H 0.10 2.71 8.03 -52.48 -0.42 2.29 16 16 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 17 N -0.87 -25.36 13.97 55.49 0.78 -24.58 16 18 Si 0.86 20.63 27.74 -169.99 -4.72 15.91 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 22 N -0.48 -8.61 11.55 -9.87 -0.11 -8.72 16 23 H 0.03 0.29 8.01 -51.93 -0.42 -0.13 16 24 H 0.07 0.78 8.03 -51.93 -0.42 0.37 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.36 7.73 -51.93 -0.40 -0.04 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 32 H 0.11 1.84 8.14 -51.92 -0.42 1.42 16 33 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -30.19 304.21 -7.52 -37.71 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.60 Total: -2.26 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.73 Total: -5.14 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.18 Total: -46.50 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.72 Total: 15.91 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.08 Total: -5.93 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.19 -7.52 -37.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703969041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.382 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds