Wall clock time and date at job start Mon Mar 30 2020 04:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47905 * 111.00050 * 2 1 4 4 C 1.53991 * 107.22505 * 214.25344 * 3 2 1 5 5 C 1.54594 * 105.14285 * 1.12969 * 4 3 2 6 6 C 1.48813 * 111.18681 * 242.66666 * 2 1 3 7 7 H 1.09002 * 110.66250 * 40.99873 * 6 2 1 8 8 C 1.50705 * 110.69755 * 278.02332 * 6 2 1 9 9 N 1.29944 * 126.28524 * 321.05480 * 8 6 2 10 10 O 1.21301 * 110.24823 * 179.97438 * 9 8 6 11 11 C 1.33639 * 109.81159 * 359.97438 * 10 9 8 12 12 C 1.50708 * 126.54785 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.46813 * 269.96871 * 12 11 10 14 14 C 1.76207 * 99.99891 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99665 * 0.02562 * 14 13 12 16 16 C 1.38791 * 119.99951 * 179.97438 * 14 13 12 17 17 N 1.31629 * 120.00184 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00108 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47325 * 89.99745 * 18 16 14 20 20 H 1.48501 * 109.46929 * 209.99901 * 18 16 14 21 21 H 1.48498 * 109.46998 * 329.99594 * 18 16 14 22 22 N 1.31129 * 106.89813 * 359.76546 * 11 10 9 23 23 H 1.09003 * 109.47065 * 59.87544 * 1 2 3 24 24 H 1.08999 * 109.47271 * 179.87278 * 1 2 3 25 25 H 1.09003 * 109.47401 * 299.87547 * 1 2 3 26 26 H 1.09002 * 109.91668 * 94.80258 * 3 2 1 27 27 H 1.09002 * 109.91761 * 333.70433 * 3 2 1 28 28 H 1.09005 * 110.30467 * 120.04331 * 4 3 2 29 29 H 1.08997 * 110.31304 * 242.20852 * 4 3 2 30 30 H 1.08999 * 110.72754 * 140.31381 * 5 4 3 31 31 H 1.08999 * 110.72080 * 263.59761 * 5 4 3 32 32 H 1.08991 * 109.47091 * 29.97159 * 12 11 10 33 33 H 1.08997 * 109.47138 * 149.97200 * 12 11 10 34 34 H 0.96996 * 120.00641 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2974 1.3708 -0.8279 5 6 3.4527 -0.0871 -1.3180 6 6 2.0068 -0.6371 -1.2326 7 1 1.4281 -0.3351 -2.1056 8 6 2.0158 -2.1379 -1.0960 9 7 2.3154 -2.8109 -0.0255 10 8 2.2276 -4.0016 -0.2399 11 6 1.8516 -4.2074 -1.5057 12 6 1.6281 -5.5417 -2.1698 13 16 3.1755 -6.1104 -2.9170 14 6 2.6398 -7.6436 -3.6005 15 1 1.6135 -7.9583 -3.4822 16 6 3.5366 -8.4462 -4.2918 17 7 3.1367 -9.5918 -4.8020 18 14 5.3116 -7.9015 -4.4969 19 1 6.1195 -8.4074 -3.3583 20 1 5.8527 -8.4458 -5.7682 21 1 5.3738 -6.4181 -4.5274 22 7 1.7089 -3.0266 -2.0577 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 -1.0276 -0.0023 25 1 -0.3634 0.5119 0.8911 26 1 2.2122 1.6967 1.0212 27 1 1.2744 2.0567 -0.4540 28 1 3.2096 2.0482 -1.6774 29 1 4.1459 1.6528 -0.2044 30 1 3.8148 -0.1121 -2.3457 31 1 4.1176 -0.6465 -0.6599 32 1 1.2956 -6.2663 -1.4267 33 1 0.8671 -5.4395 -2.9435 34 1 3.7632 -10.1526 -5.2854 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703969041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:03 Heat of formation + Delta-G solvation = 49.782646 kcal Electronic energy + Delta-G solvation = -17907.321661 eV Core-core repulsion = 14968.844674 eV Total energy + Delta-G solvation = -2938.476988 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -46.66666 -40.15073 -36.88828 -34.70286 -34.58634 -33.23780 -30.55125 -29.79754 -27.88558 -26.74369 -25.03606 -24.05851 -21.92156 -21.39269 -19.88110 -19.21800 -18.60152 -17.16509 -16.99726 -16.88058 -16.28453 -15.87667 -15.35098 -14.93233 -14.84679 -14.73411 -14.46116 -13.60269 -13.50847 -13.41220 -13.26133 -13.03296 -13.00970 -12.87383 -12.55775 -12.31934 -12.16128 -12.11911 -11.89408 -11.58257 -11.18251 -11.06641 -10.58197 -9.58933 -9.09015 -8.51858 -6.26922 -0.15473 0.85960 1.24388 1.32932 1.46741 1.56664 1.77654 2.22484 2.28507 2.59478 2.86625 2.89662 3.10714 3.53168 3.65078 3.85552 3.98242 4.10109 4.22401 4.34349 4.37712 4.44573 4.47123 4.63627 4.71601 4.79649 4.85720 4.86254 4.95263 5.03809 5.21598 5.67564 5.70689 5.91081 6.13632 6.91364 7.08454 8.60385 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.038491 B = 0.004059 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.264253 B = 6897.235475 C = 7328.439336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.532 5.532 3 C 0.038 3.962 4 C -0.120 4.120 5 C -0.114 4.114 6 C 0.152 3.848 7 H 0.093 0.907 8 C 0.180 3.820 9 N -0.374 5.374 10 O 0.072 5.928 11 C 0.213 3.787 12 C 0.004 3.996 13 S -0.176 6.176 14 C -0.522 4.522 15 H 0.070 0.930 16 C 0.049 3.951 17 N -0.914 5.914 18 Si 0.912 3.088 19 H -0.261 1.261 20 H -0.261 1.261 21 H -0.233 1.233 22 N -0.488 5.488 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 22.195 7.821 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.089 4.089 4 C -0.158 4.158 5 C -0.153 4.153 6 C 0.042 3.958 7 H 0.111 0.889 8 C -0.094 4.094 9 N -0.083 5.083 10 O 0.015 5.985 11 C -0.008 4.008 12 C -0.145 4.145 13 S 0.050 5.950 14 C -0.669 4.669 15 H 0.088 0.912 16 C -0.157 4.157 17 N -0.551 5.551 18 Si 0.734 3.266 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.157 1.157 22 N -0.224 5.224 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.712 22.902 8.618 24.480 hybrid contribution -1.073 -1.119 -0.976 1.832 sum -1.785 21.783 7.643 23.153 Atomic orbital electron populations 1.22517 0.86598 1.01371 1.02392 1.64538 1.09319 1.16893 1.34954 1.22959 0.96459 0.87540 1.01979 1.22410 0.98086 0.94764 1.00536 1.22535 0.92856 0.97284 1.02670 1.21093 0.99098 0.81699 0.93908 0.88918 1.25897 0.98893 1.00083 0.84558 1.74635 1.21015 0.88698 1.23961 1.85342 1.62483 1.20651 1.30049 1.27954 0.93808 0.96856 0.82206 1.21584 1.01838 0.88563 1.02535 1.84392 1.14297 1.25673 1.70651 1.22254 1.00204 1.03720 1.40749 0.91177 1.25536 1.02945 0.93911 0.93344 1.69999 1.37750 1.11935 1.35422 0.85903 0.79775 0.81550 0.79364 1.18509 1.18494 1.15706 1.71900 1.22068 0.98452 1.29987 0.93630 0.93780 0.89236 0.89162 0.91519 0.88931 0.89376 0.89304 0.92115 0.85476 0.85609 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.31 127.69 1.19 1.55 16 2 N -0.53 -11.40 5.23 -887.83 -4.64 -16.04 16 3 C 0.04 0.54 6.69 86.44 0.58 1.12 16 4 C -0.12 -1.59 6.93 31.47 0.22 -1.38 16 5 C -0.11 -2.31 6.49 31.80 0.21 -2.11 16 6 C 0.15 3.66 2.86 44.46 0.13 3.79 16 7 H 0.09 2.07 7.97 -2.39 -0.02 2.05 16 8 C 0.18 5.72 6.93 138.47 0.96 6.68 16 9 N -0.37 -12.96 12.14 -60.34 -0.73 -13.70 16 10 O 0.07 2.55 11.31 74.87 0.85 3.39 16 11 C 0.21 7.51 7.77 88.38 0.69 8.19 16 12 C 0.00 0.13 6.30 71.24 0.45 0.58 16 13 S -0.18 -8.08 19.39 -56.49 -1.10 -9.18 16 14 C -0.52 -28.62 10.04 67.95 0.68 -27.94 16 15 H 0.07 4.08 8.03 -2.91 -0.02 4.06 16 16 C 0.05 2.72 5.50 84.86 0.47 3.19 16 17 N -0.91 -53.65 13.97 21.65 0.30 -53.35 16 18 Si 0.91 42.21 27.74 68.60 1.90 44.12 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.23 -10.54 6.74 99.48 0.67 -9.87 16 22 N -0.49 -17.13 11.55 -303.21 -3.50 -20.63 16 23 H 0.05 0.71 8.01 -2.39 -0.02 0.69 16 24 H 0.04 1.00 8.03 -2.39 -0.02 0.98 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 0.74 7.73 -2.39 -0.02 0.72 16 28 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.47 8.05 -2.39 -0.02 1.45 16 32 H 0.13 4.17 8.14 -2.40 -0.02 4.15 16 33 H 0.13 4.37 8.14 -2.40 -0.02 4.35 16 34 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -64.30 304.21 -0.30 -64.60 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.06 Total: 7.11 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.56 Total: -6.33 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -8.57 Total: -103.71 kcal Atomic # 8 Polarization: 2.55 SS G_CDS: 0.85 Total: 3.39 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.90 Total: 44.12 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.10 Total: -9.18 kcal Total: -64.30 -0.30 -64.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703969041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.379 kcal (2) G-P(sol) polarization free energy of solvation -64.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds