Wall clock time and date at job start Mon Mar 30 2020 05:19:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 N 1.40074 * 126.03739 * 2 1
4 4 C 1.30842 * 108.23889 * 180.15506 * 3 2 1
5 5 C 1.50696 * 125.89388 * 179.88358 * 4 3 2
6 6 N 1.46897 * 109.47326 * 274.69126 * 5 4 3
7 7 C 1.46898 * 110.99954 * 169.99759 * 6 5 4
8 8 C 1.50699 * 109.47307 * 285.58690 * 7 6 5
9 9 H 1.07998 * 120.00295 * 4.84679 * 8 7 6
10 10 C 1.37878 * 119.99913 * 184.85430 * 8 7 6
11 11 N 1.31515 * 120.00040 * 359.97438 * 10 8 7
12 12 Si 1.86801 * 119.99803 * 179.97438 * 10 8 7
13 13 H 1.48498 * 109.47269 * 89.99906 * 12 10 8
14 14 H 1.48503 * 109.46892 * 209.99607 * 12 10 8
15 15 H 1.48495 * 109.47388 * 329.99517 * 12 10 8
16 16 C 1.46899 * 111.00158 * 293.95309 * 6 5 4
17 17 C 1.52998 * 117.49952 * 246.67842 * 16 6 5
18 18 C 1.52996 * 117.49998 * 178.01976 * 16 6 5
19 19 C 1.39865 * 108.21303 * 359.62166 * 4 3 2
20 20 C 1.34980 * 126.03183 * 179.73158 * 2 1 3
21 21 Cl 1.73606 * 126.14433 * 0.03927 * 20 2 1
22 22 H 1.09003 * 109.47014 * 270.26733 * 1 2 3
23 23 H 1.08998 * 109.46975 * 30.26542 * 1 2 3
24 24 H 1.08992 * 109.47232 * 150.26964 * 1 2 3
25 25 H 1.09000 * 109.46770 * 34.69322 * 5 4 3
26 26 H 1.09007 * 109.46796 * 154.68760 * 5 4 3
27 27 H 1.09007 * 109.47415 * 45.58411 * 7 6 5
28 28 H 1.08998 * 109.47314 * 165.58141 * 7 6 5
29 29 H 0.97008 * 119.99659 * 180.02562 * 11 10 8
30 30 H 1.08998 * 115.54631 * 32.35271 * 16 6 5
31 31 H 1.09001 * 117.49485 * 0.02562 * 17 16 6
32 32 H 1.08998 * 117.49783 * 145.01871 * 17 16 6
33 33 H 1.09004 * 117.50186 * 214.98286 * 18 16 6
34 34 H 1.09007 * 117.49673 * 0.02562 * 18 16 6
35 35 H 1.08004 * 126.04490 * 180.22206 * 19 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 7 2.2891 1.1327 0.0000
4 6 3.5349 0.7327 -0.0034
5 6 4.7493 1.6250 -0.0071
6 7 5.0730 2.0058 -1.3884
7 6 6.0976 3.0580 -1.4181
8 6 5.4804 4.3718 -1.0130
9 1 4.4525 4.4068 -0.6837
10 6 6.2281 5.5292 -1.0629
11 7 7.4801 5.4865 -1.4635
12 14 5.4629 7.1578 -0.5614
13 1 5.6753 7.3780 0.8917
14 1 6.0985 8.2600 -1.3272
15 1 4.0065 7.1302 -0.8502
16 6 5.4958 0.8370 -2.1714
17 6 6.9498 0.7927 -2.6456
18 6 5.8249 1.0581 -3.6491
19 6 3.5451 -0.6659 0.0032
20 6 2.2591 -1.0916 0.0051
21 17 1.7277 -2.7443 0.0119
22 1 -0.3633 0.0048 1.0277
23 1 -0.3633 0.8876 -0.5179
24 1 -0.3633 -0.8923 -0.5096
25 1 4.5434 2.5213 0.5781
26 1 5.5934 1.0916 0.4302
27 1 6.8994 2.8041 -0.7246
28 1 6.5027 3.1424 -2.4265
29 1 8.0062 6.3008 -1.4982
30 1 5.0272 -0.1078 -1.8960
31 1 7.5927 1.6307 -2.3761
32 1 7.4377 -0.1813 -2.6824
33 1 5.5731 0.2585 -4.3459
34 1 5.7280 2.0709 -4.0402
35 1 4.4229 -1.2950 0.0058
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000706165341.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:19:47
Heat of formation + Delta-G solvation = 111.432082 kcal
Electronic energy + Delta-G solvation = -18301.536640 eV
Core-core repulsion = 15363.689267 eV
Total energy + Delta-G solvation = -2937.847374 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 269.099 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.14501 -38.02979 -36.95192 -34.12952 -33.11849 -31.91884 -29.83401 -28.24439
-26.31996 -24.49322 -22.62893 -21.66464 -21.09504 -20.10867 -18.73204 -17.13354
-16.62900 -15.75052 -15.21048 -14.96522 -14.43455 -14.18111 -13.97165 -13.45680
-13.17148 -12.80116 -12.60217 -12.18574 -12.08541 -11.87076 -11.65202 -11.27200
-11.09696 -10.85174 -10.66193 -10.65596 -10.36498 -10.09475 -9.79899 -9.63692
-9.17365 -8.96987 -8.51748 -8.39009 -7.10799 -5.99594 -4.00310 1.42814
1.73914 2.67291 2.82226 3.35367 3.41501 3.47410 4.43978 4.46109
4.51636 4.93381 5.03700 5.07566 5.29784 5.36586 5.42480 5.56678
5.58798 5.64021 5.77946 5.83400 6.19332 6.23534 6.26392 6.40960
6.65527 6.70384 6.77180 6.83623 7.25829 7.30383 7.78795 7.85807
8.11110 8.18723 8.55021 9.07793 9.63803 11.10882
Molecular weight = 269.10amu
Principal moments of inertia in cm(-1)
A = 0.022080 B = 0.005080 C = 0.004343
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1267.804478 B = 5510.699986 C = 6446.233823
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.099 3.901
2 N -0.374 5.374
3 N -0.248 5.248
4 C 0.107 3.893
5 C 0.138 3.862
6 N -0.496 5.496
7 C 0.190 3.810
8 C -0.506 4.506
9 H 0.064 0.936
10 C 0.056 3.944
11 N -0.899 5.899
12 Si 0.896 3.104
13 H -0.281 1.281
14 H -0.288 1.288
15 H -0.273 1.273
16 C 0.024 3.976
17 C -0.224 4.224
18 C -0.175 4.175
19 C -0.242 4.242
20 C 0.116 3.884
21 Cl -0.018 7.018
22 H 0.075 0.925
23 H 0.095 0.905
24 H 0.084 0.916
25 H 0.101 0.899
26 H 0.049 0.951
27 H -0.005 1.005
28 H 0.043 0.957
29 H 0.261 0.739
30 H 0.107 0.893
31 H 0.107 0.893
32 H 0.080 0.920
33 H 0.084 0.916
34 H 0.098 0.902
35 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.026 -15.346 2.443 18.493
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.042 4.042
2 N -0.159 5.159
3 N -0.071 5.071
4 C -0.060 4.060
5 C 0.009 3.991
6 N -0.219 5.219
7 C 0.066 3.934
8 C -0.545 4.545
9 H 0.083 0.917
10 C -0.145 4.145
11 N -0.539 5.539
12 Si 0.724 3.276
13 H -0.207 1.207
14 H -0.213 1.213
15 H -0.198 1.198
16 C -0.087 4.087
17 C -0.264 4.264
18 C -0.213 4.213
19 C -0.273 4.273
20 C -0.037 4.037
21 Cl 0.009 6.991
22 H 0.094 0.906
23 H 0.113 0.887
24 H 0.103 0.897
25 H 0.119 0.881
26 H 0.067 0.933
27 H 0.013 0.987
28 H 0.061 0.939
29 H 0.070 0.930
30 H 0.125 0.875
31 H 0.126 0.874
32 H 0.099 0.901
33 H 0.102 0.898
34 H 0.116 0.884
35 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -11.322 -14.169 2.216 18.271
hybrid contribution 0.748 -0.384 0.469 0.963
sum -10.573 -14.552 2.685 18.187
Atomic orbital electron populations
1.21873 0.74197 1.04694 1.03483 1.48751 1.06833 1.02482 1.57799
1.77714 1.01626 1.04065 1.23706 1.22434 0.93813 0.92755 0.97004
1.20388 0.89365 0.97085 0.92298 1.61939 1.44148 1.06840 1.08978
1.19889 0.88024 0.87861 0.97656 1.21198 0.98483 0.91360 1.43431
0.91739 1.24955 0.94852 0.99135 0.95527 1.69953 1.07781 1.28342
1.47830 0.86517 0.79523 0.83153 0.78376 1.20749 1.21344 1.19759
1.22696 0.95235 0.95222 0.95508 1.23590 0.93596 1.02764 1.06425
1.22975 1.03243 1.02639 0.92472 1.21106 0.94779 0.95137 1.16293
1.21619 0.91602 0.82423 1.08007 1.98379 1.90799 1.12686 1.97201
0.90610 0.88662 0.89723 0.88055 0.93252 0.98740 0.93888 0.92967
0.87499 0.87446 0.90102 0.89763 0.88382 0.82810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.95 11.31 59.85 0.68 1.63 16
2 N -0.37 -5.39 4.01 -64.90 -0.26 -5.65 16
3 N -0.25 -4.51 12.57 33.67 0.42 -4.09 16
4 C 0.11 1.89 6.09 -82.41 -0.50 1.39 16
5 C 0.14 2.69 5.36 -4.98 -0.03 2.66 16
6 N -0.50 -10.78 4.64 -229.53 -1.07 -11.85 16
7 C 0.19 4.83 3.38 -4.98 -0.02 4.81 16
8 C -0.51 -14.16 8.58 -34.44 -0.30 -14.45 16
9 H 0.06 1.83 7.58 -52.49 -0.40 1.43 16
10 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16
11 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16
12 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16
13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
16 C 0.02 0.44 5.82 -67.72 -0.39 0.04 16
17 C -0.22 -4.00 9.56 -26.70 -0.26 -4.26 16
18 C -0.18 -3.14 9.91 -26.70 -0.26 -3.41 16
19 C -0.24 -3.60 9.31 -39.96 -0.37 -3.97 16
20 C 0.12 1.59 7.46 -17.16 -0.13 1.46 16
21 Cl -0.02 -0.19 28.76 -51.86 -1.49 -1.68 16
22 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
23 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
24 H 0.08 0.64 7.80 -51.93 -0.41 0.23 16
25 H 0.10 2.14 7.21 -51.93 -0.37 1.77 16
26 H 0.05 0.88 8.12 -51.92 -0.42 0.46 16
27 H -0.01 -0.14 7.82 -51.93 -0.41 -0.54 16
28 H 0.04 1.17 5.63 -51.93 -0.29 0.88 16
29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
30 H 0.11 1.81 6.14 -51.93 -0.32 1.49 16
31 H 0.11 2.20 6.02 -51.93 -0.31 1.89 16
32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16
33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
34 H 0.10 1.97 7.46 -51.92 -0.39 1.58 16
35 H 0.15 1.97 8.04 -52.48 -0.42 1.55 16
LS Contribution 309.08 15.07 4.66 4.66
Total: -1.00 -30.94 309.08 -8.26 -39.20
By element:
Atomic # 1 Polarization: 5.48 SS G_CDS: -4.56 Total: 0.92 kcal
Atomic # 6 Polarization: -10.92 SS G_CDS: -1.68 Total: -12.59 kcal
Atomic # 7 Polarization: -47.11 SS G_CDS: -0.17 Total: -47.28 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal
Atomic # 17 Polarization: -0.19 SS G_CDS: -1.49 Total: -1.68 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -30.94 -8.26 -39.20 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706165341.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.628 kcal
(2) G-P(sol) polarization free energy of solvation -30.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.693 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal
(6) G-S(sol) free energy of system = (1) + (5) 111.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds