Wall clock time and date at job start Mon Mar 30 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40074 * 126.03739 * 2 1 4 4 C 1.30842 * 108.23889 * 180.15506 * 3 2 1 5 5 C 1.50696 * 125.89388 * 179.88358 * 4 3 2 6 6 N 1.46897 * 109.47326 * 274.69126 * 5 4 3 7 7 C 1.46898 * 110.99954 * 169.99759 * 6 5 4 8 8 C 1.50699 * 109.47307 * 285.58690 * 7 6 5 9 9 H 1.07998 * 120.00295 * 4.84679 * 8 7 6 10 10 C 1.37878 * 119.99913 * 184.85430 * 8 7 6 11 11 N 1.31515 * 120.00040 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99803 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47269 * 89.99906 * 12 10 8 14 14 H 1.48503 * 109.46892 * 209.99607 * 12 10 8 15 15 H 1.48495 * 109.47388 * 329.99517 * 12 10 8 16 16 C 1.46899 * 111.00158 * 293.95309 * 6 5 4 17 17 C 1.52998 * 117.49952 * 246.67842 * 16 6 5 18 18 C 1.52996 * 117.49998 * 178.01976 * 16 6 5 19 19 C 1.39865 * 108.21303 * 359.62166 * 4 3 2 20 20 C 1.34980 * 126.03183 * 179.73158 * 2 1 3 21 21 Cl 1.73606 * 126.14433 * 0.03927 * 20 2 1 22 22 H 1.09003 * 109.47014 * 270.26733 * 1 2 3 23 23 H 1.08998 * 109.46975 * 30.26542 * 1 2 3 24 24 H 1.08992 * 109.47232 * 150.26964 * 1 2 3 25 25 H 1.09000 * 109.46770 * 34.69322 * 5 4 3 26 26 H 1.09007 * 109.46796 * 154.68760 * 5 4 3 27 27 H 1.09007 * 109.47415 * 45.58411 * 7 6 5 28 28 H 1.08998 * 109.47314 * 165.58141 * 7 6 5 29 29 H 0.97008 * 119.99659 * 180.02562 * 11 10 8 30 30 H 1.08998 * 115.54631 * 32.35271 * 16 6 5 31 31 H 1.09001 * 117.49485 * 0.02562 * 17 16 6 32 32 H 1.08998 * 117.49783 * 145.01871 * 17 16 6 33 33 H 1.09004 * 117.50186 * 214.98286 * 18 16 6 34 34 H 1.09007 * 117.49673 * 0.02562 * 18 16 6 35 35 H 1.08004 * 126.04490 * 180.22206 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5349 0.7327 -0.0034 5 6 4.7493 1.6250 -0.0071 6 7 5.0730 2.0058 -1.3884 7 6 6.0976 3.0580 -1.4181 8 6 5.4804 4.3718 -1.0130 9 1 4.4525 4.4068 -0.6837 10 6 6.2281 5.5292 -1.0629 11 7 7.4801 5.4865 -1.4635 12 14 5.4629 7.1578 -0.5614 13 1 5.6753 7.3780 0.8917 14 1 6.0985 8.2600 -1.3272 15 1 4.0065 7.1302 -0.8502 16 6 5.4958 0.8370 -2.1714 17 6 6.9498 0.7927 -2.6456 18 6 5.8249 1.0581 -3.6491 19 6 3.5451 -0.6659 0.0032 20 6 2.2591 -1.0916 0.0051 21 17 1.7277 -2.7443 0.0119 22 1 -0.3633 0.0048 1.0277 23 1 -0.3633 0.8876 -0.5179 24 1 -0.3633 -0.8923 -0.5096 25 1 4.5434 2.5213 0.5781 26 1 5.5934 1.0916 0.4302 27 1 6.8994 2.8041 -0.7246 28 1 6.5027 3.1424 -2.4265 29 1 8.0062 6.3008 -1.4982 30 1 5.0272 -0.1078 -1.8960 31 1 7.5927 1.6307 -2.3761 32 1 7.4377 -0.1813 -2.6824 33 1 5.5731 0.2585 -4.3459 34 1 5.7280 2.0709 -4.0402 35 1 4.4229 -1.2950 0.0058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706165341.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:47 Heat of formation + Delta-G solvation = 91.369103 kcal Electronic energy + Delta-G solvation = -18302.406637 eV Core-core repulsion = 15363.689267 eV Total energy + Delta-G solvation = -2938.717370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.31173 -39.61679 -37.90471 -35.55588 -34.90156 -33.52729 -31.00752 -29.88155 -27.90881 -25.88381 -24.50513 -23.12698 -22.22494 -21.46575 -20.26565 -18.71302 -18.13199 -17.12254 -16.79950 -16.55629 -16.01783 -15.45461 -15.26136 -14.92298 -14.54317 -14.09678 -13.77778 -13.68668 -13.41163 -13.19641 -12.96734 -12.81924 -12.63041 -12.55250 -12.48676 -12.28696 -11.90601 -11.76098 -11.44102 -11.12661 -11.10417 -10.57761 -10.20784 -9.62842 -8.81080 -8.17419 -6.26508 0.40502 0.62389 1.40969 1.41976 1.52867 1.55308 1.70418 2.42089 2.99857 3.14169 3.38393 3.42728 3.95333 4.10067 4.18643 4.23584 4.34175 4.35573 4.41269 4.59410 4.63963 4.73804 4.80979 4.83284 4.97096 5.11935 5.22662 5.33632 5.36643 5.44283 5.68518 5.76753 6.09769 6.35931 6.56236 6.67738 6.88413 7.42314 8.92445 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.005080 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.804478 B = 5510.699986 C = 6446.233823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.370 5.370 3 N -0.291 5.291 4 C 0.092 3.908 5 C 0.144 3.856 6 N -0.511 5.511 7 C 0.212 3.788 8 C -0.523 4.523 9 H 0.054 0.946 10 C 0.007 3.993 11 N -0.930 5.930 12 Si 0.963 3.037 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.271 1.271 16 C 0.016 3.984 17 C -0.216 4.216 18 C -0.172 4.172 19 C -0.250 4.250 20 C 0.123 3.877 21 Cl 0.017 6.983 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.061 0.939 27 H -0.028 1.028 28 H 0.020 0.980 29 H 0.264 0.736 30 H 0.133 0.867 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 -17.256 2.558 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.155 5.155 3 N -0.115 5.115 4 C -0.074 4.074 5 C 0.015 3.985 6 N -0.234 5.234 7 C 0.086 3.914 8 C -0.562 4.562 9 H 0.073 0.927 10 C -0.191 4.191 11 N -0.571 5.571 12 Si 0.788 3.212 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.196 1.196 16 C -0.094 4.094 17 C -0.255 4.255 18 C -0.210 4.210 19 C -0.281 4.281 20 C -0.031 4.031 21 Cl 0.045 6.955 22 H 0.113 0.887 23 H 0.114 0.886 24 H 0.129 0.871 25 H 0.091 0.909 26 H 0.079 0.921 27 H -0.010 1.010 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.836 -16.093 2.335 20.718 hybrid contribution 1.116 0.088 0.438 1.202 sum -11.720 -16.006 2.773 20.031 Atomic orbital electron populations 1.22281 0.71719 1.06067 1.05212 1.49034 1.08157 1.01805 1.56463 1.77597 1.02378 1.06442 1.25112 1.22088 0.92982 0.93747 0.98542 1.20194 0.91050 0.96566 0.90710 1.61793 1.42904 1.07863 1.10813 1.19441 0.88059 0.88567 0.95330 1.21468 0.98145 0.92946 1.43592 0.92748 1.25782 0.95267 1.02684 0.95367 1.70065 1.08992 1.29410 1.48628 0.85484 0.78546 0.78774 0.78434 1.19702 1.20574 1.19583 1.22849 0.96119 0.94898 0.95511 1.23511 0.92834 1.03210 1.05933 1.23019 1.03097 1.02207 0.92704 1.21247 0.96206 0.93870 1.16728 1.21761 0.91248 0.83823 1.06258 1.98396 1.90433 1.09735 1.96967 0.88682 0.88561 0.87136 0.90936 0.92103 1.01045 0.96238 0.92703 0.84991 0.90873 0.86537 0.86186 0.91420 0.80919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.46 11.31 127.77 1.45 2.91 16 2 N -0.37 -9.98 4.01 -359.25 -1.44 -11.42 16 3 N -0.29 -10.50 12.57 -47.39 -0.60 -11.10 16 4 C 0.09 3.23 6.09 43.10 0.26 3.50 16 5 C 0.14 5.78 5.36 85.56 0.46 6.24 16 6 N -0.51 -22.86 4.64 -880.09 -4.08 -26.94 16 7 C 0.21 11.30 3.38 85.56 0.29 11.59 16 8 C -0.52 -30.43 8.58 25.60 0.22 -30.21 16 9 H 0.05 3.21 7.58 -2.91 -0.02 3.18 16 10 C 0.01 0.42 5.46 84.65 0.46 0.88 16 11 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 12 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 16 C 0.02 0.58 5.82 44.91 0.26 0.84 16 17 C -0.22 -7.60 9.56 30.62 0.29 -7.30 16 18 C -0.17 -6.07 9.91 30.62 0.30 -5.77 16 19 C -0.25 -6.96 9.31 22.02 0.20 -6.76 16 20 C 0.12 3.05 7.46 83.57 0.62 3.68 16 21 Cl 0.02 0.29 28.76 -2.72 -0.08 0.21 16 22 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.11 1.28 7.80 -2.39 -0.02 1.26 16 25 H 0.07 3.26 7.21 -2.39 -0.02 3.24 16 26 H 0.06 2.23 8.12 -2.38 -0.02 2.21 16 27 H -0.03 -1.59 7.82 -2.38 -0.02 -1.61 16 28 H 0.02 1.13 5.63 -2.39 -0.01 1.11 16 29 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 30 H 0.13 4.19 6.14 -2.39 -0.01 4.18 16 31 H 0.07 3.11 6.02 -2.39 -0.01 3.10 16 32 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.07 2.80 7.46 -2.38 -0.02 2.78 16 35 H 0.17 3.97 8.04 -2.91 -0.02 3.95 16 Total: -1.00 -68.73 309.08 2.03 -66.70 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.09 Total: 11.32 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.82 Total: -20.41 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -5.84 Total: -105.35 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -68.73 2.03 -66.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706165341.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.067 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds