Wall clock time and date at job start Mon Mar 30 2020 05:19:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 N 1.40074 * 126.03739 * 2 1
4 4 C 1.30842 * 108.23889 * 180.15506 * 3 2 1
5 5 C 1.50696 * 125.89388 * 179.88358 * 4 3 2
6 6 N 1.46897 * 109.47326 * 274.69126 * 5 4 3
7 7 C 1.46898 * 110.99954 * 169.99759 * 6 5 4
8 8 C 1.50699 * 109.47307 * 285.58690 * 7 6 5
9 9 H 1.07998 * 120.00295 * 4.84679 * 8 7 6
10 10 C 1.37878 * 119.99913 * 184.85430 * 8 7 6
11 11 N 1.31515 * 120.00040 * 359.97438 * 10 8 7
12 12 Si 1.86801 * 119.99803 * 179.97438 * 10 8 7
13 13 H 1.48498 * 109.47269 * 89.99906 * 12 10 8
14 14 H 1.48503 * 109.46892 * 209.99607 * 12 10 8
15 15 H 1.48495 * 109.47388 * 329.99517 * 12 10 8
16 16 C 1.46899 * 111.00158 * 293.95309 * 6 5 4
17 17 C 1.52998 * 117.49952 * 246.67842 * 16 6 5
18 18 C 1.52996 * 117.49998 * 178.01976 * 16 6 5
19 19 C 1.39865 * 108.21303 * 359.62166 * 4 3 2
20 20 C 1.34980 * 126.03183 * 179.73158 * 2 1 3
21 21 Cl 1.73606 * 126.14433 * 0.03927 * 20 2 1
22 22 H 1.09003 * 109.47014 * 270.26733 * 1 2 3
23 23 H 1.08998 * 109.46975 * 30.26542 * 1 2 3
24 24 H 1.08992 * 109.47232 * 150.26964 * 1 2 3
25 25 H 1.09000 * 109.46770 * 34.69322 * 5 4 3
26 26 H 1.09007 * 109.46796 * 154.68760 * 5 4 3
27 27 H 1.09007 * 109.47415 * 45.58411 * 7 6 5
28 28 H 1.08998 * 109.47314 * 165.58141 * 7 6 5
29 29 H 0.97008 * 119.99659 * 180.02562 * 11 10 8
30 30 H 1.08998 * 115.54631 * 32.35271 * 16 6 5
31 31 H 1.09001 * 117.49485 * 0.02562 * 17 16 6
32 32 H 1.08998 * 117.49783 * 145.01871 * 17 16 6
33 33 H 1.09004 * 117.50186 * 214.98286 * 18 16 6
34 34 H 1.09007 * 117.49673 * 0.02562 * 18 16 6
35 35 H 1.08004 * 126.04490 * 180.22206 * 19 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 7 2.2891 1.1327 0.0000
4 6 3.5349 0.7327 -0.0034
5 6 4.7493 1.6250 -0.0071
6 7 5.0730 2.0058 -1.3884
7 6 6.0976 3.0580 -1.4181
8 6 5.4804 4.3718 -1.0130
9 1 4.4525 4.4068 -0.6837
10 6 6.2281 5.5292 -1.0629
11 7 7.4801 5.4865 -1.4635
12 14 5.4629 7.1578 -0.5614
13 1 5.6753 7.3780 0.8917
14 1 6.0985 8.2600 -1.3272
15 1 4.0065 7.1302 -0.8502
16 6 5.4958 0.8370 -2.1714
17 6 6.9498 0.7927 -2.6456
18 6 5.8249 1.0581 -3.6491
19 6 3.5451 -0.6659 0.0032
20 6 2.2591 -1.0916 0.0051
21 17 1.7277 -2.7443 0.0119
22 1 -0.3633 0.0048 1.0277
23 1 -0.3633 0.8876 -0.5179
24 1 -0.3633 -0.8923 -0.5096
25 1 4.5434 2.5213 0.5781
26 1 5.5934 1.0916 0.4302
27 1 6.8994 2.8041 -0.7246
28 1 6.5027 3.1424 -2.4265
29 1 8.0062 6.3008 -1.4982
30 1 5.0272 -0.1078 -1.8960
31 1 7.5927 1.6307 -2.3761
32 1 7.4377 -0.1813 -2.6824
33 1 5.5731 0.2585 -4.3459
34 1 5.7280 2.0709 -4.0402
35 1 4.4229 -1.2950 0.0058
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000706165341.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:19:47
Heat of formation + Delta-G solvation = 91.369103 kcal
Electronic energy + Delta-G solvation = -18302.406637 eV
Core-core repulsion = 15363.689267 eV
Total energy + Delta-G solvation = -2938.717370 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 269.099 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.31173 -39.61679 -37.90471 -35.55588 -34.90156 -33.52729 -31.00752 -29.88155
-27.90881 -25.88381 -24.50513 -23.12698 -22.22494 -21.46575 -20.26565 -18.71302
-18.13199 -17.12254 -16.79950 -16.55629 -16.01783 -15.45461 -15.26136 -14.92298
-14.54317 -14.09678 -13.77778 -13.68668 -13.41163 -13.19641 -12.96734 -12.81924
-12.63041 -12.55250 -12.48676 -12.28696 -11.90601 -11.76098 -11.44102 -11.12661
-11.10417 -10.57761 -10.20784 -9.62842 -8.81080 -8.17419 -6.26508 0.40502
0.62389 1.40969 1.41976 1.52867 1.55308 1.70418 2.42089 2.99857
3.14169 3.38393 3.42728 3.95333 4.10067 4.18643 4.23584 4.34175
4.35573 4.41269 4.59410 4.63963 4.73804 4.80979 4.83284 4.97096
5.11935 5.22662 5.33632 5.36643 5.44283 5.68518 5.76753 6.09769
6.35931 6.56236 6.67738 6.88413 7.42314 8.92445
Molecular weight = 269.10amu
Principal moments of inertia in cm(-1)
A = 0.022080 B = 0.005080 C = 0.004343
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1267.804478 B = 5510.699986 C = 6446.233823
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.370 5.370
3 N -0.291 5.291
4 C 0.092 3.908
5 C 0.144 3.856
6 N -0.511 5.511
7 C 0.212 3.788
8 C -0.523 4.523
9 H 0.054 0.946
10 C 0.007 3.993
11 N -0.930 5.930
12 Si 0.963 3.037
13 H -0.272 1.272
14 H -0.280 1.280
15 H -0.271 1.271
16 C 0.016 3.984
17 C -0.216 4.216
18 C -0.172 4.172
19 C -0.250 4.250
20 C 0.123 3.877
21 Cl 0.017 6.983
22 H 0.095 0.905
23 H 0.096 0.904
24 H 0.110 0.890
25 H 0.072 0.928
26 H 0.061 0.939
27 H -0.028 1.028
28 H 0.020 0.980
29 H 0.264 0.736
30 H 0.133 0.867
31 H 0.073 0.927
32 H 0.116 0.884
33 H 0.120 0.880
34 H 0.067 0.933
35 H 0.173 0.827
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.526 -17.256 2.558 20.908
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 N -0.155 5.155
3 N -0.115 5.115
4 C -0.074 4.074
5 C 0.015 3.985
6 N -0.234 5.234
7 C 0.086 3.914
8 C -0.562 4.562
9 H 0.073 0.927
10 C -0.191 4.191
11 N -0.571 5.571
12 Si 0.788 3.212
13 H -0.197 1.197
14 H -0.206 1.206
15 H -0.196 1.196
16 C -0.094 4.094
17 C -0.255 4.255
18 C -0.210 4.210
19 C -0.281 4.281
20 C -0.031 4.031
21 Cl 0.045 6.955
22 H 0.113 0.887
23 H 0.114 0.886
24 H 0.129 0.871
25 H 0.091 0.909
26 H 0.079 0.921
27 H -0.010 1.010
28 H 0.038 0.962
29 H 0.073 0.927
30 H 0.150 0.850
31 H 0.091 0.909
32 H 0.135 0.865
33 H 0.138 0.862
34 H 0.086 0.914
35 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -12.836 -16.093 2.335 20.718
hybrid contribution 1.116 0.088 0.438 1.202
sum -11.720 -16.006 2.773 20.031
Atomic orbital electron populations
1.22281 0.71719 1.06067 1.05212 1.49034 1.08157 1.01805 1.56463
1.77597 1.02378 1.06442 1.25112 1.22088 0.92982 0.93747 0.98542
1.20194 0.91050 0.96566 0.90710 1.61793 1.42904 1.07863 1.10813
1.19441 0.88059 0.88567 0.95330 1.21468 0.98145 0.92946 1.43592
0.92748 1.25782 0.95267 1.02684 0.95367 1.70065 1.08992 1.29410
1.48628 0.85484 0.78546 0.78774 0.78434 1.19702 1.20574 1.19583
1.22849 0.96119 0.94898 0.95511 1.23511 0.92834 1.03210 1.05933
1.23019 1.03097 1.02207 0.92704 1.21247 0.96206 0.93870 1.16728
1.21761 0.91248 0.83823 1.06258 1.98396 1.90433 1.09735 1.96967
0.88682 0.88561 0.87136 0.90936 0.92103 1.01045 0.96238 0.92703
0.84991 0.90873 0.86537 0.86186 0.91420 0.80919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.46 11.31 127.77 1.45 2.91 16
2 N -0.37 -9.98 4.01 -359.25 -1.44 -11.42 16
3 N -0.29 -10.50 12.57 -47.39 -0.60 -11.10 16
4 C 0.09 3.23 6.09 43.10 0.26 3.50 16
5 C 0.14 5.78 5.36 85.56 0.46 6.24 16
6 N -0.51 -22.86 4.64 -880.09 -4.08 -26.94 16
7 C 0.21 11.30 3.38 85.56 0.29 11.59 16
8 C -0.52 -30.43 8.58 25.60 0.22 -30.21 16
9 H 0.05 3.21 7.58 -2.91 -0.02 3.18 16
10 C 0.01 0.42 5.46 84.65 0.46 0.88 16
11 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16
12 Si 0.96 45.50 29.54 68.60 2.03 47.53 16
13 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16
14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
15 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16
16 C 0.02 0.58 5.82 44.91 0.26 0.84 16
17 C -0.22 -7.60 9.56 30.62 0.29 -7.30 16
18 C -0.17 -6.07 9.91 30.62 0.30 -5.77 16
19 C -0.25 -6.96 9.31 22.02 0.20 -6.76 16
20 C 0.12 3.05 7.46 83.57 0.62 3.68 16
21 Cl 0.02 0.29 28.76 -2.72 -0.08 0.21 16
22 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
23 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16
24 H 0.11 1.28 7.80 -2.39 -0.02 1.26 16
25 H 0.07 3.26 7.21 -2.39 -0.02 3.24 16
26 H 0.06 2.23 8.12 -2.38 -0.02 2.21 16
27 H -0.03 -1.59 7.82 -2.38 -0.02 -1.61 16
28 H 0.02 1.13 5.63 -2.39 -0.01 1.11 16
29 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16
30 H 0.13 4.19 6.14 -2.39 -0.01 4.18 16
31 H 0.07 3.11 6.02 -2.39 -0.01 3.10 16
32 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16
33 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16
34 H 0.07 2.80 7.46 -2.38 -0.02 2.78 16
35 H 0.17 3.97 8.04 -2.91 -0.02 3.95 16
Total: -1.00 -68.73 309.08 2.03 -66.70
By element:
Atomic # 1 Polarization: 10.22 SS G_CDS: 1.09 Total: 11.32 kcal
Atomic # 6 Polarization: -25.23 SS G_CDS: 4.82 Total: -20.41 kcal
Atomic # 7 Polarization: -99.51 SS G_CDS: -5.84 Total: -105.35 kcal
Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal
Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal
Total: -68.73 2.03 -66.70 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706165341.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 158.067 kcal
(2) G-P(sol) polarization free energy of solvation -68.725 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.369 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds