Wall clock time and date at job start Mon Mar 30 2020 05:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40089 * 126.03138 * 2 1 4 4 C 1.30830 * 108.23197 * 180.10956 * 3 2 1 5 5 C 1.50700 * 125.88972 * 179.90692 * 4 3 2 6 6 N 1.46890 * 109.47462 * 274.69544 * 5 4 3 7 7 C 1.48554 * 111.00614 * 69.86742 * 6 5 4 8 8 C 1.54376 * 104.60062 * 200.96350 * 7 6 5 9 9 C 1.54263 * 105.05965 * 23.85470 * 8 7 6 10 10 H 1.09006 * 110.32086 * 241.00616 * 9 8 7 11 11 C 1.50695 * 110.32795 * 118.89465 * 9 8 7 12 12 H 1.07995 * 120.00496 * 241.45549 * 11 9 8 13 13 C 1.37880 * 119.99572 * 61.45483 * 11 9 8 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99951 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 59.99744 * 15 13 11 17 17 H 1.48503 * 109.47261 * 299.99924 * 15 13 11 18 18 H 1.48500 * 109.47454 * 179.97438 * 15 13 11 19 19 C 1.48567 * 110.99531 * 314.45049 * 6 5 4 20 20 C 1.39866 * 108.22111 * 359.64545 * 4 3 2 21 21 C 1.34978 * 126.03873 * 179.70839 * 2 1 3 22 22 Cl 1.73601 * 126.14131 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.47539 * 270.29300 * 1 2 3 24 24 H 1.08996 * 109.47211 * 30.29801 * 1 2 3 25 25 H 1.08999 * 109.46673 * 150.29379 * 1 2 3 26 26 H 1.08996 * 109.47393 * 154.68602 * 5 4 3 27 27 H 1.09010 * 109.46579 * 34.69084 * 5 4 3 28 28 H 1.08996 * 110.41372 * 82.18165 * 7 6 5 29 29 H 1.09002 * 110.51422 * 319.79630 * 7 6 5 30 30 H 1.08998 * 110.32371 * 264.95954 * 8 7 6 31 31 H 1.09000 * 110.32759 * 142.74523 * 8 7 6 32 32 H 0.97006 * 119.99995 * 359.97438 * 14 13 11 33 33 H 1.08998 * 110.41212 * 40.26537 * 19 6 5 34 34 H 1.08995 * 110.41038 * 277.81728 * 19 6 5 35 35 H 1.08000 * 126.04670 * 180.22940 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5348 0.7330 -0.0024 5 6 4.7491 1.6254 -0.0052 6 7 5.0738 2.0061 -1.3863 7 6 4.0526 2.9339 -1.9370 8 6 4.2024 2.8128 -3.4687 9 6 4.8398 1.4272 -3.7007 10 1 5.8051 1.5327 -4.1960 11 6 3.9222 0.5601 -4.5236 12 1 3.5372 -0.3613 -4.1124 13 6 3.5742 0.9432 -5.8016 14 7 4.0433 2.0650 -6.3025 15 14 2.4362 -0.1312 -6.8214 16 1 1.1337 -0.2754 -6.1228 17 1 3.0513 -1.4705 -7.0034 18 1 2.2185 0.4985 -8.1486 19 6 5.0214 0.8278 -2.2896 20 6 3.5451 -0.6656 0.0043 21 6 2.2592 -1.0914 0.0056 22 17 1.7279 -2.7442 0.0133 23 1 -0.3634 0.0053 1.0276 24 1 -0.3633 0.8873 -0.5184 25 1 -0.3632 -0.8926 -0.5093 26 1 5.5929 1.0922 0.4327 27 1 4.5426 2.5217 0.5798 28 1 4.2540 3.9555 -1.6149 29 1 3.0529 2.6288 -1.6275 30 1 4.8557 3.5983 -3.8484 31 1 3.2259 2.8656 -3.9500 32 1 4.6340 2.6232 -5.7728 33 1 4.1740 0.1911 -2.0352 34 1 5.9523 0.2638 -2.2332 35 1 4.4230 -1.2947 0.0077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706169367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:20 Heat of formation + Delta-G solvation = 56.002300 kcal Electronic energy + Delta-G solvation = -18972.654574 eV Core-core repulsion = 16032.403584 eV Total energy + Delta-G solvation = -2940.250990 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50992 -39.79364 -37.95556 -35.91349 -34.34482 -32.17223 -31.07811 -29.96625 -28.31170 -26.56554 -25.51643 -22.44215 -22.39979 -21.39334 -20.66504 -18.98692 -18.28484 -17.07116 -16.65162 -16.14765 -15.86749 -15.62731 -15.22276 -15.19612 -14.87970 -14.12057 -13.93287 -13.59173 -13.51997 -13.36274 -12.85932 -12.82763 -12.64649 -12.46065 -12.36439 -12.21594 -11.99700 -11.81665 -11.62953 -11.34897 -10.58943 -10.44808 -10.27607 -9.63742 -9.54493 -8.58773 -6.30737 0.34532 0.55768 1.47963 1.51154 1.55767 1.62603 1.75187 2.54838 3.15642 3.20338 3.39398 3.85488 4.02489 4.03544 4.27316 4.29159 4.33659 4.35761 4.52164 4.57059 4.63353 4.75925 4.78607 4.81492 4.93639 5.09465 5.17076 5.37992 5.41672 5.63634 5.65149 5.73403 6.08276 6.15476 6.23924 6.46008 6.67760 7.48928 8.80400 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.007442 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.320951 B = 3761.660277 C = 4789.983142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.371 5.371 3 N -0.290 5.290 4 C 0.049 3.951 5 C 0.120 3.880 6 N -0.498 5.498 7 C 0.041 3.959 8 C -0.104 4.104 9 C 0.021 3.979 10 H -0.005 1.005 11 C -0.599 4.599 12 H 0.038 0.962 13 C -0.030 4.030 14 N -0.936 5.936 15 Si 1.107 2.893 16 H -0.276 1.276 17 H -0.270 1.270 18 H -0.282 1.282 19 C 0.054 3.946 20 C -0.247 4.247 21 C 0.117 3.883 22 Cl 0.011 6.989 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.262 0.738 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 -6.435 16.110 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.156 5.156 3 N -0.115 5.115 4 C -0.118 4.118 5 C -0.010 4.010 6 N -0.221 5.221 7 C -0.087 4.087 8 C -0.143 4.143 9 C 0.002 3.998 10 H 0.013 0.987 11 C -0.637 4.637 12 H 0.056 0.944 13 C -0.228 4.228 14 N -0.573 5.573 15 Si 0.930 3.070 16 H -0.202 1.202 17 H -0.195 1.195 18 H -0.208 1.208 19 C -0.073 4.073 20 C -0.278 4.278 21 C -0.037 4.037 22 Cl 0.039 6.961 23 H 0.120 0.880 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.783 -5.460 14.679 17.067 hybrid contribution 0.350 -0.999 1.103 1.529 sum -6.432 -6.459 15.782 18.225 Atomic orbital electron populations 1.22254 0.71980 1.05742 1.05297 1.48939 1.08070 1.01958 1.56677 1.77443 1.01989 1.06825 1.25279 1.23295 0.94568 0.94891 0.99040 1.21171 0.90890 0.97477 0.91474 1.65709 1.43153 1.11660 1.01559 1.23084 0.94137 0.97432 0.94095 1.22269 0.98977 0.98235 0.94805 1.19537 0.94292 0.92919 0.93017 0.98726 1.22253 1.31659 1.08054 1.01760 0.94413 1.27092 0.99643 0.98462 0.97625 1.70872 1.32566 1.13251 1.40607 0.83060 0.74679 0.74417 0.74872 1.20207 1.19505 1.20786 1.23078 1.00008 0.92307 0.91952 1.21312 0.95914 0.94787 1.15790 1.21820 0.91659 0.83793 1.06446 1.98393 1.90519 1.10219 1.96968 0.87956 0.88736 0.88077 0.86058 0.88144 0.89517 0.93847 0.94319 0.94942 0.92725 0.93602 0.91107 0.81354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 11.31 127.77 1.45 3.19 16 2 N -0.37 -10.87 4.01 -359.27 -1.44 -12.31 16 3 N -0.29 -9.83 11.29 -47.39 -0.54 -10.37 16 4 C 0.05 1.57 4.57 43.10 0.20 1.76 16 5 C 0.12 3.48 6.14 85.56 0.53 4.01 16 6 N -0.50 -18.42 5.65 -886.07 -5.01 -23.43 16 7 C 0.04 1.63 6.32 86.45 0.55 2.18 16 8 C -0.10 -5.13 5.03 31.49 0.16 -4.97 16 9 C 0.02 1.12 2.65 -10.64 -0.03 1.10 16 10 H -0.01 -0.31 8.04 -2.38 -0.02 -0.33 16 11 C -0.60 -34.52 8.37 25.60 0.21 -34.30 16 12 H 0.04 2.18 7.58 -2.91 -0.02 2.16 16 13 C -0.03 -1.73 5.09 84.66 0.43 -1.29 16 14 N -0.94 -57.92 13.27 21.45 0.28 -57.64 16 15 Si 1.11 51.36 29.90 68.60 2.05 53.42 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 C 0.05 2.32 5.70 86.45 0.49 2.81 16 20 C -0.25 -7.39 9.21 22.02 0.20 -7.18 16 21 C 0.12 3.33 7.46 83.57 0.62 3.95 16 22 Cl 0.01 0.25 28.76 -2.72 -0.08 0.17 16 23 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.10 1.72 7.80 -2.39 -0.02 1.70 16 26 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.10 2.61 8.09 -2.38 -0.02 2.59 16 28 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.04 1.82 6.19 -2.39 -0.01 1.80 16 30 H 0.04 1.88 7.92 -2.39 -0.02 1.86 16 31 H 0.03 1.77 7.24 -2.39 -0.02 1.76 16 32 H 0.26 16.35 6.00 -92.70 -0.56 15.79 16 33 H 0.05 2.05 4.62 -2.39 -0.01 2.04 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -69.13 298.31 1.39 -67.74 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.30 Total: 11.16 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 4.81 Total: -28.75 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -6.70 Total: -103.74 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.42 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -69.13 1.39 -67.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706169367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.744 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds