Wall clock time and date at job start Mon Mar 30 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45455 * 2 1 4 4 C 1.53317 * 109.45804 * 240.03114 * 2 1 3 5 5 C 1.51195 * 108.61878 * 320.07419 * 4 2 1 6 6 O 1.21274 * 119.76976 * 108.73080 * 5 4 2 7 7 N 1.33634 * 120.45549 * 288.75031 * 5 4 2 8 8 C 1.46923 * 120.63028 * 359.70908 * 7 5 4 9 9 C 1.53220 * 108.82478 * 71.95983 * 8 7 5 10 10 N 1.46071 * 109.72056 * 278.41132 * 9 8 7 11 11 C 1.34778 * 118.72914 * 243.81015 * 10 9 8 12 12 O 1.21436 * 120.00062 * 173.39704 * 11 10 9 13 13 C 1.48832 * 120.00052 * 353.40565 * 11 10 9 14 14 O 1.21502 * 120.00298 * 5.94577 * 13 11 10 15 15 N 1.34778 * 119.99834 * 185.95517 * 13 11 10 16 16 C 1.36123 * 119.99707 * 179.97438 * 15 13 11 17 17 H 1.07998 * 120.00524 * 359.97438 * 16 15 13 18 18 C 1.39584 * 119.99914 * 179.97438 * 16 15 13 19 19 N 1.31015 * 120.00156 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00174 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47048 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47386 * 120.00193 * 20 18 16 23 23 H 1.48498 * 109.47281 * 239.99971 * 20 18 16 24 24 H 1.09005 * 109.46680 * 300.02168 * 1 2 3 25 25 H 1.08997 * 109.47540 * 60.01723 * 1 2 3 26 26 H 1.09001 * 109.47586 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.61129 * 79.81216 * 4 2 1 28 28 H 1.09001 * 109.61014 * 200.16080 * 4 2 1 29 29 H 0.97005 * 119.68637 * 179.69738 * 7 5 4 30 30 H 1.08999 * 109.57279 * 312.16315 * 8 7 5 31 31 H 1.08998 * 109.57939 * 191.76627 * 8 7 5 32 32 H 1.09007 * 109.42752 * 158.33402 * 9 8 7 33 33 H 1.08997 * 109.42932 * 38.49220 * 9 8 7 34 34 H 0.96996 * 120.00329 * 359.97438 * 15 13 11 35 35 H 0.96998 * 120.00498 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0407 -0.7221 -1.2523 5 6 1.1655 -1.9290 -1.5044 6 8 0.3984 -1.9308 -2.4437 7 7 1.2311 -2.9933 -0.6990 8 6 2.1579 -3.0136 0.4409 9 6 1.6349 -2.0601 1.5203 10 7 2.0170 -0.6886 1.1936 11 6 2.8504 -0.0327 2.0253 12 8 3.2782 1.0614 1.7177 13 6 3.2464 -0.6493 3.3207 14 8 2.9072 -1.7866 3.5811 15 7 3.9813 0.0539 4.2050 16 6 4.3431 -0.5099 5.3899 17 1 4.0410 -1.5205 5.6217 18 6 5.1046 0.2182 6.3055 19 7 5.4708 1.4444 6.0247 20 14 5.6018 -0.5557 7.9314 21 1 5.0671 -1.9392 8.0050 22 1 7.0831 -0.5921 8.0299 23 1 5.0509 0.2487 9.0515 24 1 -0.3633 0.5142 0.8899 25 1 -0.3634 0.5135 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.9914 -0.0492 -2.1083 28 1 3.0714 -1.0406 -1.0962 29 1 0.6613 -3.7599 -0.8685 30 1 3.1457 -2.6887 0.1141 31 1 2.2186 -4.0243 0.8444 32 1 2.0616 -2.3355 2.4848 33 1 0.5485 -2.1315 1.5716 34 1 4.2524 0.9617 3.9970 35 1 5.9997 1.9505 6.6611 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707208352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:00 Heat of formation + Delta-G solvation = -101.884345 kcal Electronic energy + Delta-G solvation = -21333.228392 eV Core-core repulsion = 17945.421759 eV Total energy + Delta-G solvation = -3387.806633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.14764 -40.79760 -39.21082 -37.88613 -36.34197 -35.71152 -33.77994 -33.23065 -29.63092 -29.00262 -27.85705 -25.40637 -24.88742 -22.19931 -21.32396 -20.47882 -19.87786 -18.54613 -18.13352 -17.94431 -17.35538 -17.02638 -16.82690 -16.07346 -16.06237 -15.67761 -15.38511 -14.74244 -14.73431 -14.17305 -13.84576 -13.79058 -13.57543 -13.37489 -13.19512 -12.96539 -12.80780 -12.65484 -12.50563 -12.14693 -12.04352 -11.68832 -11.66463 -10.91565 -10.48435 -10.28747 -9.76658 -9.38465 -8.65014 -6.09380 0.57263 1.45024 1.49032 1.53462 1.59442 1.71004 2.28336 2.33608 2.35654 3.06061 3.17131 3.41638 3.74894 3.89015 3.92221 4.12791 4.19942 4.23571 4.32793 4.45123 4.62746 4.75575 4.83358 4.98918 5.07441 5.22549 5.34739 5.51921 5.69872 5.83362 6.16191 6.20438 6.41752 6.81808 6.98482 7.18807 7.29175 7.82279 8.50058 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040956 B = 0.004657 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.493949 B = 6010.826993 C = 6422.070106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 H 0.105 0.895 4 C -0.145 4.145 5 C 0.525 3.475 6 O -0.591 6.591 7 N -0.713 5.713 8 C 0.104 3.896 9 C -0.002 4.002 10 N -0.573 5.573 11 C 0.514 3.486 12 O -0.566 6.566 13 C 0.391 3.609 14 O -0.580 6.580 15 N -0.502 5.502 16 C -0.339 4.339 17 H 0.109 0.891 18 C -0.003 4.003 19 N -0.894 5.894 20 Si 1.008 2.992 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.270 1.270 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.407 0.593 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.187 0.813 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -6.252 -7.315 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.123 0.877 4 C -0.186 4.186 5 C 0.312 3.688 6 O -0.473 6.473 7 N -0.365 5.365 8 C -0.021 4.021 9 C -0.123 4.123 10 N -0.305 5.305 11 C 0.300 3.700 12 O -0.445 6.445 13 C 0.177 3.823 14 O -0.472 6.472 15 N -0.133 5.133 16 C -0.469 4.469 17 H 0.127 0.873 18 C -0.208 4.208 19 N -0.532 5.532 20 Si 0.830 3.170 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.196 1.196 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.245 0.755 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.201 0.799 33 H 0.088 0.912 34 H 0.235 0.765 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.066 -6.072 -7.677 11.021 hybrid contribution 0.134 0.228 0.365 0.451 sum -4.933 -5.844 -7.312 10.580 Atomic orbital electron populations 1.22129 0.93376 1.02565 1.03268 1.21095 0.95198 0.97741 0.82682 0.87671 1.22390 1.00275 0.95874 1.00040 1.20539 0.82525 0.84862 0.80828 1.90715 1.41638 1.82713 1.32248 1.46047 1.42378 1.18587 1.29455 1.22247 0.92373 1.02522 0.84915 1.24425 1.02142 0.78882 1.06806 1.47765 1.45128 1.15294 1.22361 1.20189 0.79500 0.84845 0.85497 1.90677 1.55353 1.22110 1.76408 1.19405 0.88070 0.87846 0.86964 1.89768 1.61050 1.19124 1.77257 1.41692 1.41047 1.15722 1.14886 1.20106 1.32195 1.01270 0.93344 0.87350 1.26532 0.95115 0.95542 1.03603 1.69553 1.34443 1.10509 1.38654 0.84649 0.78239 0.78757 0.75394 1.18227 1.19474 1.19556 0.92044 0.89805 0.92458 0.86289 0.88347 0.75533 0.90766 0.85350 0.79933 0.91233 0.76487 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 8.42 71.98 0.61 -3.25 16 2 C 0.14 3.72 3.10 45.16 0.14 3.86 16 3 H 0.11 3.12 6.82 -2.39 -0.02 3.10 16 4 C -0.14 -3.48 5.37 30.11 0.16 -3.32 16 5 C 0.52 13.49 5.07 87.99 0.45 13.94 16 6 O -0.59 -19.06 17.91 -3.01 -0.05 -19.12 16 7 N -0.71 -14.71 5.23 -462.74 -2.42 -17.13 16 8 C 0.10 2.13 6.49 86.37 0.56 2.69 16 9 C 0.00 -0.06 5.62 86.53 0.49 0.43 16 10 N -0.57 -18.04 2.53 -800.96 -2.02 -20.06 16 11 C 0.51 20.57 7.66 87.08 0.67 21.23 16 12 O -0.57 -24.92 15.71 -3.52 -0.06 -24.98 16 13 C 0.39 17.70 7.73 87.08 0.67 18.37 16 14 O -0.58 -26.13 12.45 -3.72 -0.05 -26.18 16 15 N -0.50 -25.07 5.24 -308.87 -1.62 -26.69 16 16 C -0.34 -17.37 9.67 84.35 0.82 -16.55 16 17 H 0.11 5.59 7.15 -2.91 -0.02 5.57 16 18 C 0.00 -0.15 5.51 85.14 0.47 0.32 16 19 N -0.89 -45.47 13.03 21.76 0.28 -45.19 16 20 Si 1.01 37.91 29.56 68.60 2.03 39.93 16 21 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 24 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.45 5.76 -2.39 -0.01 1.43 16 27 H 0.12 2.56 8.13 -2.39 -0.02 2.54 16 28 H 0.10 2.30 7.09 -2.39 -0.02 2.29 16 29 H 0.41 7.03 8.91 -92.70 -0.83 6.21 16 30 H 0.07 1.62 7.03 -2.39 -0.02 1.61 16 31 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.19 6.17 3.30 -108.48 -0.36 5.81 16 33 H 0.07 1.80 7.13 -2.39 -0.02 1.78 16 34 H 0.40 20.66 7.36 -92.71 -0.68 19.97 16 35 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 Total: -1.00 -60.78 289.02 0.42 -60.35 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.69 Total: 41.34 kcal Atomic # 6 Polarization: 32.69 SS G_CDS: 5.03 Total: 37.72 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -5.78 Total: -109.07 kcal Atomic # 8 Polarization: -70.12 SS G_CDS: -0.16 Total: -70.27 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.93 kcal Total: -60.78 0.42 -60.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707208352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.530 kcal (2) G-P(sol) polarization free energy of solvation -60.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds