Wall clock time and date at job start Mon Mar 30 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46195 * 2 1 4 4 C 1.53311 * 109.46426 * 119.97138 * 2 1 3 5 5 C 1.51194 * 108.61969 * 200.10359 * 4 2 1 6 6 O 1.21278 * 119.77335 * 108.74984 * 5 4 2 7 7 N 1.33635 * 120.45796 * 288.77627 * 5 4 2 8 8 C 1.46919 * 120.62522 * 359.70000 * 7 5 4 9 9 C 1.52674 * 108.93610 * 71.88442 * 8 7 5 10 10 N 1.46067 * 109.98811 * 278.58390 * 9 8 7 11 11 C 1.34776 * 118.72872 * 243.83110 * 10 9 8 12 12 O 1.21446 * 119.99959 * 193.21456 * 11 10 9 13 13 C 1.48828 * 120.00448 * 13.20810 * 11 10 9 14 14 O 1.21509 * 119.99674 * 6.59569 * 13 11 10 15 15 N 1.34772 * 120.00482 * 186.59853 * 13 11 10 16 16 C 1.36117 * 120.00162 * 179.72618 * 15 13 11 17 17 H 1.07999 * 120.00041 * 0.27138 * 16 15 13 18 18 C 1.39591 * 120.00004 * 180.26856 * 16 15 13 19 19 N 1.31012 * 119.99872 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99876 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47314 * 89.99678 * 20 18 16 22 22 H 1.48498 * 109.47013 * 209.99278 * 20 18 16 23 23 H 1.48496 * 109.47234 * 329.99666 * 20 18 16 24 24 H 1.09000 * 109.47156 * 177.80084 * 1 2 3 25 25 H 1.09002 * 109.47168 * 297.80622 * 1 2 3 26 26 H 1.08998 * 109.47015 * 57.79923 * 1 2 3 27 27 H 1.08993 * 109.61308 * 319.84343 * 4 2 1 28 28 H 1.08992 * 109.60946 * 80.36488 * 4 2 1 29 29 H 0.96996 * 119.68366 * 179.67951 * 7 5 4 30 30 H 1.09002 * 109.57662 * 191.74737 * 8 7 5 31 31 H 1.08998 * 109.58352 * 312.14362 * 8 7 5 32 32 H 1.09001 * 109.31581 * 158.41109 * 9 8 7 33 33 H 1.09004 * 109.26745 * 38.72714 * 9 8 7 34 34 H 0.97008 * 119.99937 * 359.97438 * 15 13 11 35 35 H 0.97004 * 119.99957 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0408 -0.7221 1.2522 5 6 3.4703 -0.2989 1.5041 6 8 3.7278 0.4235 2.4436 7 7 4.4520 -0.7148 0.6984 8 6 4.1621 -1.5951 -0.4417 9 6 3.4377 -0.7898 -1.5177 10 7 2.0170 -0.6885 -1.1938 11 6 1.1209 -1.2566 -2.0249 12 8 -0.0592 -0.9901 -1.9194 13 6 1.5776 -2.2105 -3.0720 14 8 2.7380 -2.5696 -3.1023 15 7 0.7041 -2.6760 -3.9868 16 6 1.1231 -3.5441 -4.9479 17 1 2.1545 -3.8633 -4.9748 18 6 0.2196 -4.0218 -5.8987 19 7 0.6230 -4.8570 -6.8241 20 14 -1.5641 -3.4693 -5.8526 21 1 -1.7248 -2.2454 -6.6782 22 1 -2.4305 -4.5477 -6.3925 23 1 -1.9552 -3.1754 -4.4505 24 1 -0.3633 -1.0269 -0.0394 25 1 -0.3633 0.4794 0.9090 26 1 -0.3633 0.5476 -0.8696 27 1 1.4229 -0.4515 2.1083 28 1 2.0007 -1.7999 1.0949 29 1 5.3644 -0.4327 0.8677 30 1 5.0949 -1.9884 -0.8459 31 1 3.5273 -2.4187 -0.1151 32 1 3.5555 -1.2869 -2.4806 33 1 3.8696 0.2095 -1.5710 34 1 -0.2224 -2.3896 -3.9625 35 1 -0.0047 -5.1887 -7.4850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707208356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:04 Heat of formation + Delta-G solvation = -60.383702 kcal Electronic energy + Delta-G solvation = -21452.881465 eV Core-core repulsion = 18066.874435 eV Total energy + Delta-G solvation = -3386.007030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92428 -39.46115 -37.83691 -36.53884 -34.69342 -34.40853 -32.54059 -32.00175 -28.44402 -28.05677 -26.06048 -23.66286 -23.26236 -21.31037 -19.97327 -19.46624 -18.46332 -17.32897 -16.88102 -16.72121 -15.84198 -15.68995 -15.24855 -15.02972 -14.28724 -14.05744 -13.84415 -13.55227 -13.07642 -12.95380 -12.79666 -12.61710 -12.49060 -12.24415 -11.99936 -11.66251 -11.50367 -11.37587 -11.11791 -10.77507 -10.31906 -9.92508 -9.85308 -9.62543 -9.33502 -8.58497 -8.43253 -7.95823 -6.73622 -4.14859 2.08910 2.57457 2.93049 2.96698 2.99654 3.03209 3.29056 3.83325 3.94719 4.35333 4.47087 4.85640 4.97690 4.99752 5.13759 5.20665 5.22370 5.34124 5.44471 5.54245 5.70338 5.86161 6.00595 6.20962 6.33777 6.46858 6.71135 6.84045 7.11596 7.21438 7.43599 7.75805 8.08322 8.17570 8.36337 8.59034 9.04023 9.45865 10.35542 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034326 B = 0.005341 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.522418 B = 5241.544468 C = 5912.636619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.150 3.850 3 H 0.074 0.926 4 C -0.154 4.154 5 C 0.519 3.481 6 O -0.559 6.559 7 N -0.726 5.726 8 C 0.099 3.901 9 C 0.047 3.953 10 N -0.592 5.592 11 C 0.511 3.489 12 O -0.535 6.535 13 C 0.393 3.607 14 O -0.571 6.571 15 N -0.516 5.516 16 C -0.309 4.309 17 H 0.130 0.870 18 C 0.055 3.945 19 N -0.842 5.842 20 Si 0.875 3.125 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.258 1.258 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.398 0.602 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.060 0.940 34 H 0.384 0.616 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 6.232 9.368 11.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.195 4.195 5 C 0.306 3.694 6 O -0.438 6.438 7 N -0.377 5.377 8 C -0.026 4.026 9 C -0.075 4.075 10 N -0.326 5.326 11 C 0.298 3.702 12 O -0.413 6.413 13 C 0.179 3.821 14 O -0.460 6.460 15 N -0.151 5.151 16 C -0.439 4.439 17 H 0.148 0.852 18 C -0.155 4.155 19 N -0.478 5.478 20 Si 0.700 3.300 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.183 1.183 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.113 0.887 29 H 0.234 0.766 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.188 0.812 33 H 0.078 0.922 34 H 0.219 0.781 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.795 6.320 9.660 11.683 hybrid contribution -0.842 0.328 0.020 0.904 sum 0.952 6.648 9.680 11.782 Atomic orbital electron populations 1.22328 0.91421 1.04167 1.01151 1.21018 0.96662 0.95093 0.82584 0.90822 1.22544 0.93202 1.03123 1.00665 1.20567 0.88162 0.79433 0.81278 1.90725 1.84568 1.37837 1.30703 1.46138 1.10505 1.50924 1.30179 1.22075 1.02122 0.92690 0.85706 1.23276 0.78571 1.01093 1.04595 1.47567 1.07386 1.54559 1.23115 1.20628 0.85624 0.81011 0.82934 1.90764 1.17799 1.61809 1.70895 1.18913 0.87138 0.89430 0.86637 1.90263 1.17004 1.62775 1.75967 1.41890 1.10868 1.37842 1.24511 1.19600 0.99856 1.20180 1.04216 0.85240 1.25271 0.99322 0.95664 0.95216 1.69435 1.36712 1.27570 1.14070 0.86682 0.83563 0.79950 0.79853 1.18789 1.19407 1.18318 0.90780 0.94130 0.89904 0.87442 0.88678 0.76635 0.88166 0.90098 0.81232 0.92150 0.78064 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 7.46 37.16 0.28 -1.56 16 2 C 0.15 2.03 3.21 -67.95 -0.22 1.81 16 3 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 4 C -0.15 -1.91 4.99 -27.48 -0.14 -2.05 16 5 C 0.52 7.12 7.11 -11.25 -0.08 7.04 16 6 O -0.56 -9.55 17.91 5.56 0.10 -9.45 16 7 N -0.73 -8.25 5.30 -60.28 -0.32 -8.57 16 8 C 0.10 1.13 6.47 -3.98 -0.03 1.11 16 9 C 0.05 0.64 5.61 -4.44 -0.02 0.62 16 10 N -0.59 -9.04 2.78 -167.45 -0.47 -9.51 16 11 C 0.51 9.43 7.43 -11.88 -0.09 9.34 16 12 O -0.54 -10.28 11.62 5.41 0.06 -10.22 16 13 C 0.39 8.38 7.59 -11.88 -0.09 8.29 16 14 O -0.57 -12.67 12.73 5.36 0.07 -12.60 16 15 N -0.52 -11.81 5.05 -11.59 -0.06 -11.86 16 16 C -0.31 -7.91 10.16 -15.15 -0.15 -8.06 16 17 H 0.13 3.68 7.36 -52.49 -0.39 3.30 16 18 C 0.05 1.37 5.51 -17.40 -0.10 1.27 16 19 N -0.84 -22.03 13.94 55.53 0.77 -21.26 16 20 Si 0.88 18.09 27.74 -169.99 -4.72 13.37 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.26 -5.16 6.53 56.52 0.37 -4.79 16 24 H 0.07 1.13 6.62 -51.93 -0.34 0.79 16 25 H 0.04 0.47 8.10 -51.93 -0.42 0.04 16 26 H 0.08 1.27 6.62 -51.93 -0.34 0.92 16 27 H 0.11 1.22 7.95 -51.93 -0.41 0.81 16 28 H 0.09 1.16 7.08 -51.93 -0.37 0.79 16 29 H 0.40 3.90 8.91 -40.82 -0.36 3.53 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.01 7.03 -51.93 -0.37 0.65 16 32 H 0.17 2.79 4.19 -55.54 -0.23 2.56 16 33 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.38 8.32 5.24 -40.82 -0.21 8.11 16 35 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -28.64 284.94 -4.77 -33.41 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -3.87 Total: 14.57 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: -0.64 Total: 17.81 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.07 Total: -51.20 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: 0.23 Total: -32.26 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.72 Total: 13.37 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.64 -4.77 -33.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707208356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.969 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds