Wall clock time and date at job start Mon Mar 30 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46195 * 2 1 4 4 C 1.53311 * 109.46426 * 119.97138 * 2 1 3 5 5 C 1.51194 * 108.61969 * 200.10359 * 4 2 1 6 6 O 1.21278 * 119.77335 * 108.74984 * 5 4 2 7 7 N 1.33635 * 120.45796 * 288.77627 * 5 4 2 8 8 C 1.46919 * 120.62522 * 359.70000 * 7 5 4 9 9 C 1.52674 * 108.93610 * 71.88442 * 8 7 5 10 10 N 1.46067 * 109.98811 * 278.58390 * 9 8 7 11 11 C 1.34776 * 118.72872 * 243.83110 * 10 9 8 12 12 O 1.21446 * 119.99959 * 193.21456 * 11 10 9 13 13 C 1.48828 * 120.00448 * 13.20810 * 11 10 9 14 14 O 1.21509 * 119.99674 * 6.59569 * 13 11 10 15 15 N 1.34772 * 120.00482 * 186.59853 * 13 11 10 16 16 C 1.36117 * 120.00162 * 179.72618 * 15 13 11 17 17 H 1.07999 * 120.00041 * 0.27138 * 16 15 13 18 18 C 1.39591 * 120.00004 * 180.26856 * 16 15 13 19 19 N 1.31012 * 119.99872 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99876 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47314 * 89.99678 * 20 18 16 22 22 H 1.48498 * 109.47013 * 209.99278 * 20 18 16 23 23 H 1.48496 * 109.47234 * 329.99666 * 20 18 16 24 24 H 1.09000 * 109.47156 * 177.80084 * 1 2 3 25 25 H 1.09002 * 109.47168 * 297.80622 * 1 2 3 26 26 H 1.08998 * 109.47015 * 57.79923 * 1 2 3 27 27 H 1.08993 * 109.61308 * 319.84343 * 4 2 1 28 28 H 1.08992 * 109.60946 * 80.36488 * 4 2 1 29 29 H 0.96996 * 119.68366 * 179.67951 * 7 5 4 30 30 H 1.09002 * 109.57662 * 191.74737 * 8 7 5 31 31 H 1.08998 * 109.58352 * 312.14362 * 8 7 5 32 32 H 1.09001 * 109.31581 * 158.41109 * 9 8 7 33 33 H 1.09004 * 109.26745 * 38.72714 * 9 8 7 34 34 H 0.97008 * 119.99937 * 359.97438 * 15 13 11 35 35 H 0.97004 * 119.99957 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0408 -0.7221 1.2522 5 6 3.4703 -0.2989 1.5041 6 8 3.7278 0.4235 2.4436 7 7 4.4520 -0.7148 0.6984 8 6 4.1621 -1.5951 -0.4417 9 6 3.4377 -0.7898 -1.5177 10 7 2.0170 -0.6885 -1.1938 11 6 1.1209 -1.2566 -2.0249 12 8 -0.0592 -0.9901 -1.9194 13 6 1.5776 -2.2105 -3.0720 14 8 2.7380 -2.5696 -3.1023 15 7 0.7041 -2.6760 -3.9868 16 6 1.1231 -3.5441 -4.9479 17 1 2.1545 -3.8633 -4.9748 18 6 0.2196 -4.0218 -5.8987 19 7 0.6230 -4.8570 -6.8241 20 14 -1.5641 -3.4693 -5.8526 21 1 -1.7248 -2.2454 -6.6782 22 1 -2.4305 -4.5477 -6.3925 23 1 -1.9552 -3.1754 -4.4505 24 1 -0.3633 -1.0269 -0.0394 25 1 -0.3633 0.4794 0.9090 26 1 -0.3633 0.5476 -0.8696 27 1 1.4229 -0.4515 2.1083 28 1 2.0007 -1.7999 1.0949 29 1 5.3644 -0.4327 0.8677 30 1 5.0949 -1.9884 -0.8459 31 1 3.5273 -2.4187 -0.1151 32 1 3.5555 -1.2869 -2.4806 33 1 3.8696 0.2095 -1.5710 34 1 -0.2224 -2.3896 -3.9625 35 1 -0.0047 -5.1887 -7.4850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707208356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:04 Heat of formation + Delta-G solvation = -83.178856 kcal Electronic energy + Delta-G solvation = -21453.869937 eV Core-core repulsion = 18066.874435 eV Total energy + Delta-G solvation = -3386.995502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.27022 -40.76264 -39.47809 -37.85749 -36.28198 -35.69875 -34.02427 -33.61390 -29.61146 -29.16535 -27.78338 -25.17282 -24.38143 -22.70715 -21.35283 -20.92758 -20.01912 -18.57973 -18.20754 -17.94158 -17.33667 -17.10993 -16.65015 -16.47210 -15.71028 -15.58704 -15.12765 -15.02746 -14.65846 -14.36967 -14.07227 -13.95955 -13.77256 -13.45850 -13.17427 -13.07415 -12.85121 -12.56699 -12.51415 -12.26413 -12.07736 -11.64613 -11.10998 -10.98916 -10.48040 -10.40766 -9.67415 -9.51878 -8.59231 -6.11429 0.51513 1.32118 1.34612 1.40191 1.48696 1.60480 2.12189 2.27352 2.31277 2.84765 3.10960 3.38802 3.71173 3.80029 3.94932 4.09244 4.13753 4.21407 4.30605 4.49712 4.68955 4.84006 4.99278 5.08259 5.09992 5.23932 5.33953 5.58778 5.80421 5.83108 6.07314 6.17330 6.32551 6.63896 6.88230 7.15337 7.20057 7.67035 8.54602 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034326 B = 0.005341 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.522418 B = 5241.544468 C = 5912.636619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.147 4.147 5 C 0.518 3.482 6 O -0.593 6.593 7 N -0.711 5.711 8 C 0.106 3.894 9 C 0.045 3.955 10 N -0.581 5.581 11 C 0.517 3.483 12 O -0.538 6.538 13 C 0.404 3.596 14 O -0.578 6.578 15 N -0.530 5.530 16 C -0.332 4.332 17 H 0.085 0.915 18 C 0.013 3.987 19 N -0.892 5.892 20 Si 0.942 3.058 21 H -0.254 1.254 22 H -0.262 1.262 23 H -0.246 1.246 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.408 0.592 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.079 0.921 34 H 0.391 0.609 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 7.645 11.134 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.102 0.898 4 C -0.188 4.188 5 C 0.306 3.694 6 O -0.475 6.475 7 N -0.362 5.362 8 C -0.018 4.018 9 C -0.077 4.077 10 N -0.315 5.315 11 C 0.302 3.698 12 O -0.417 6.417 13 C 0.190 3.810 14 O -0.466 6.466 15 N -0.168 5.168 16 C -0.462 4.462 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.529 5.529 20 Si 0.762 3.238 21 H -0.179 1.179 22 H -0.187 1.187 23 H -0.170 1.170 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.246 0.754 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.098 0.902 34 H 0.227 0.773 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.213 7.731 11.430 13.852 hybrid contribution -0.441 -0.007 -0.362 0.570 sum 0.772 7.724 11.068 13.519 Atomic orbital electron populations 1.22204 0.91258 1.03218 1.01880 1.21166 0.96767 0.95449 0.81850 0.89763 1.22500 0.92699 1.03159 1.00440 1.20752 0.88853 0.78919 0.80922 1.90722 1.85099 1.39482 1.32203 1.46027 1.10817 1.50075 1.29326 1.22007 1.02963 0.91871 0.84958 1.23215 0.78011 1.02316 1.04117 1.47650 1.07555 1.53326 1.22920 1.20064 0.85937 0.81007 0.82784 1.90794 1.18033 1.61943 1.70893 1.19716 0.86743 0.88409 0.86152 1.90307 1.17580 1.62664 1.76032 1.41764 1.11405 1.38606 1.24990 1.19186 0.98430 1.22201 1.06341 0.89663 1.26010 1.03653 0.95308 0.94288 1.69541 1.38550 1.29475 1.15348 0.85669 0.77761 0.79815 0.80516 1.17868 1.18672 1.17032 0.92277 0.91312 0.91475 0.85912 0.88276 0.75432 0.85726 0.90717 0.83669 0.90232 0.77275 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 7.46 71.98 0.54 -2.62 16 2 C 0.15 3.61 3.21 45.16 0.14 3.75 16 3 H 0.08 1.93 7.95 -2.38 -0.02 1.91 16 4 C -0.15 -3.19 4.99 30.11 0.15 -3.04 16 5 C 0.52 12.71 7.11 87.99 0.63 13.34 16 6 O -0.59 -18.83 17.91 -3.02 -0.05 -18.88 16 7 N -0.71 -14.01 5.30 -463.65 -2.46 -16.47 16 8 C 0.11 2.16 6.47 86.19 0.56 2.71 16 9 C 0.05 1.14 5.61 86.35 0.48 1.63 16 10 N -0.58 -16.40 2.78 -802.01 -2.23 -18.63 16 11 C 0.52 18.27 7.43 87.08 0.65 18.92 16 12 O -0.54 -19.70 11.62 -3.55 -0.04 -19.74 16 13 C 0.40 17.17 7.59 87.08 0.66 17.83 16 14 O -0.58 -25.77 12.73 -3.74 -0.05 -25.82 16 15 N -0.53 -24.42 5.05 -308.87 -1.56 -25.98 16 16 C -0.33 -17.65 10.16 84.36 0.86 -16.79 16 17 H 0.09 5.17 7.36 -2.91 -0.02 5.15 16 18 C 0.01 0.64 5.51 85.14 0.47 1.11 16 19 N -0.89 -48.39 13.94 21.77 0.30 -48.08 16 20 Si 0.94 37.20 27.74 68.60 1.90 39.10 16 21 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.25 -9.13 6.53 99.48 0.65 -8.48 16 24 H 0.06 1.65 6.62 -2.39 -0.02 1.63 16 25 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 26 H 0.07 1.89 6.62 -2.39 -0.02 1.87 16 27 H 0.12 2.35 7.95 -2.39 -0.02 2.33 16 28 H 0.10 2.11 7.08 -2.39 -0.02 2.10 16 29 H 0.41 6.74 8.91 -92.71 -0.83 5.91 16 30 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.68 7.03 -2.39 -0.02 1.66 16 32 H 0.15 4.59 4.19 -59.52 -0.25 4.34 16 33 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 34 H 0.39 16.67 5.24 -92.70 -0.49 16.19 16 35 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 Total: -1.00 -63.25 284.94 0.50 -62.75 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.45 Total: 34.91 kcal Atomic # 6 Polarization: 31.70 SS G_CDS: 5.13 Total: 36.84 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -5.94 Total: -109.16 kcal Atomic # 8 Polarization: -64.30 SS G_CDS: -0.14 Total: -64.44 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 1.90 Total: 39.10 kcal Total: -63.25 0.50 -62.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707208356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.429 kcal (2) G-P(sol) polarization free energy of solvation -63.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds