Wall clock time and date at job start Mon Mar 30 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47225 * 2 1 4 4 C 1.46771 * 124.34563 * 89.99900 * 3 2 1 5 5 C 1.54472 * 105.47009 * 162.98695 * 4 3 2 6 6 C 1.54624 * 101.76850 * 25.41409 * 5 4 3 7 7 H 1.09001 * 110.48767 * 94.01512 * 6 5 4 8 8 N 1.46500 * 110.49069 * 216.52272 * 6 5 4 9 9 C 1.34773 * 120.00431 * 205.00250 * 8 6 5 10 10 O 1.21443 * 119.99988 * 359.97438 * 9 8 6 11 11 C 1.48832 * 120.00135 * 180.02562 * 9 8 6 12 12 O 1.21503 * 119.99913 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99765 * 179.97438 * 11 9 8 14 14 C 1.36126 * 119.99762 * 179.71995 * 13 11 9 15 15 H 1.08002 * 119.99676 * 0.28533 * 14 13 11 16 16 C 1.39582 * 119.99936 * 180.27850 * 14 13 11 17 17 N 1.31014 * 120.00124 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46812 * 90.00436 * 18 16 14 20 20 H 1.48502 * 109.47120 * 209.99641 * 18 16 14 21 21 H 1.48494 * 109.47357 * 330.00360 * 18 16 14 22 22 C 1.34413 * 124.35243 * 270.00335 * 3 2 1 23 23 O 1.21280 * 124.94206 * 0.44076 * 22 3 2 24 24 H 1.08996 * 109.47077 * 299.99996 * 1 2 3 25 25 H 1.09007 * 109.46923 * 60.00145 * 1 2 3 26 26 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47170 * 240.00437 * 2 1 3 28 28 H 1.08999 * 109.47235 * 120.00441 * 2 1 3 29 29 H 1.08999 * 110.24411 * 43.98369 * 4 3 2 30 30 H 1.09005 * 110.24497 * 281.98395 * 4 3 2 31 31 H 1.09002 * 110.97370 * 267.29504 * 5 4 3 32 32 H 1.09002 * 111.00298 * 143.55060 * 5 4 3 33 33 H 0.97000 * 119.99456 * 24.99812 * 8 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 35 35 H 0.96999 * 120.00271 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2118 5 6 3.1744 3.3440 0.7488 6 6 2.7695 3.4754 -0.7377 7 1 1.9761 4.2139 -0.8531 8 7 3.9296 3.8391 -1.5550 9 6 3.7538 4.4821 -2.7263 10 8 2.6337 4.7595 -3.1046 11 6 4.9324 4.8511 -3.5569 12 8 6.0531 4.5731 -3.1787 13 7 4.7566 5.4936 -4.7285 14 6 5.8349 5.8362 -5.4854 15 1 6.8310 5.5890 -5.1493 16 6 5.6531 6.5068 -6.6960 17 7 6.6908 6.8360 -7.4248 18 14 3.9301 6.9347 -7.2771 19 1 3.5533 8.2759 -6.7630 20 1 3.8971 6.9466 -8.7617 21 1 2.9704 5.9221 -6.7686 22 6 2.2711 2.0963 -1.1097 23 8 2.1209 1.6946 -2.2441 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.8323 1.5530 1.9384 30 1 1.3637 2.5307 1.6430 31 1 4.2331 3.1033 0.8449 32 1 2.9312 4.2518 1.3011 33 1 4.8243 3.6172 -1.2530 34 1 3.8619 5.7159 -5.0303 35 1 6.5645 7.3017 -8.2663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709068552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:43 Heat of formation + Delta-G solvation = -94.505373 kcal Electronic energy + Delta-G solvation = -20532.196500 eV Core-core repulsion = 17144.709844 eV Total energy + Delta-G solvation = -3387.486657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83530 -39.31390 -37.30403 -36.52048 -35.13475 -34.19144 -32.59747 -31.82574 -29.33324 -27.48091 -25.79579 -23.89130 -22.87026 -21.70342 -19.67543 -19.39670 -19.00474 -17.29093 -16.88983 -16.56809 -16.06602 -15.49721 -14.91882 -14.82965 -14.30201 -14.11344 -13.83150 -13.71953 -13.44803 -13.18800 -12.82715 -12.62229 -12.50055 -12.37664 -12.22491 -12.15155 -11.49348 -11.25662 -11.24534 -10.70915 -10.53996 -10.27505 -10.07680 -9.74329 -8.93292 -8.79633 -8.41403 -8.39225 -6.56556 -3.97849 2.25514 2.45881 2.76544 3.07767 3.11453 3.14564 3.33118 3.98793 4.05116 4.16919 4.31347 4.57092 4.65517 4.77780 4.81103 4.93844 5.09281 5.15395 5.16528 5.28414 5.41715 5.49891 5.60367 5.62879 5.76210 5.90344 6.35461 6.53381 6.92874 7.28146 7.58404 7.93085 8.12057 8.25023 8.51740 8.76098 9.21584 9.63537 10.53413 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.004255 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.000574 B = 6578.512302 C = 6943.533893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.625 5.625 4 C 0.107 3.893 5 C -0.138 4.138 6 C 0.116 3.884 7 H 0.126 0.874 8 N -0.698 5.698 9 C 0.520 3.480 10 O -0.538 6.538 11 C 0.407 3.593 12 O -0.579 6.579 13 N -0.525 5.525 14 C -0.308 4.308 15 H 0.128 0.872 16 C 0.053 3.947 17 N -0.849 5.849 18 Si 0.875 3.125 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.259 1.259 22 C 0.503 3.497 23 O -0.504 6.504 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.415 0.585 34 H 0.384 0.616 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 -8.841 18.763 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.362 5.362 4 C -0.017 4.017 5 C -0.176 4.176 6 C 0.006 3.994 7 H 0.143 0.857 8 N -0.353 5.353 9 C 0.304 3.696 10 O -0.414 6.414 11 C 0.192 3.808 12 O -0.466 6.466 13 N -0.162 5.162 14 C -0.437 4.437 15 H 0.145 0.855 16 C -0.155 4.155 17 N -0.486 5.486 18 Si 0.699 3.301 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.183 1.183 22 C 0.288 3.712 23 O -0.376 6.376 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.252 0.748 34 H 0.219 0.781 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.106 -9.008 17.886 22.899 hybrid contribution -0.907 0.193 -0.359 0.994 sum -12.013 -8.815 17.526 23.004 Atomic orbital electron populations 1.22168 0.95854 1.02288 1.02527 1.21332 0.94338 0.81110 1.03117 1.48313 1.66906 1.13752 1.07226 1.22053 0.99447 0.92566 0.87629 1.22938 1.01480 0.99388 0.93837 1.21553 0.91823 0.95281 0.90713 0.85661 1.45381 1.09048 1.59528 1.21305 1.20677 0.90213 0.77214 0.81447 1.90686 1.25962 1.54048 1.70681 1.18714 0.88325 0.88926 0.84873 1.90615 1.24163 1.59511 1.72274 1.41816 1.09583 1.47417 1.17389 1.19567 0.89192 1.34258 1.00727 0.85458 1.25226 0.98399 0.96185 0.95711 1.69440 1.30095 1.36013 1.13085 0.86685 0.83474 0.80223 0.79688 1.18862 1.19497 1.18326 1.21378 0.77251 0.87942 0.84643 1.90760 1.51266 1.74607 1.21002 0.92466 0.92114 0.91478 0.90025 0.90384 0.89996 0.90807 0.88897 0.88071 0.74824 0.78105 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.12 1.08 6.65 -4.04 -0.03 1.05 16 3 N -0.63 -6.55 2.93 -172.41 -0.51 -7.06 16 4 C 0.11 0.69 7.35 -3.12 -0.02 0.67 16 5 C -0.14 -1.04 6.87 -25.10 -0.17 -1.21 16 6 C 0.12 1.53 3.28 -67.94 -0.22 1.31 16 7 H 0.13 1.71 7.55 -51.93 -0.39 1.32 16 8 N -0.70 -11.71 5.12 -54.45 -0.28 -11.99 16 9 C 0.52 11.25 7.87 -11.88 -0.09 11.16 16 10 O -0.54 -12.50 16.12 5.42 0.09 -12.41 16 11 C 0.41 10.21 7.82 -11.87 -0.09 10.12 16 12 O -0.58 -15.58 16.03 5.36 0.09 -15.49 16 13 N -0.53 -13.72 5.06 -11.59 -0.06 -13.78 16 14 C -0.31 -8.79 10.16 -15.14 -0.15 -8.94 16 15 H 0.13 4.02 7.37 -52.49 -0.39 3.63 16 16 C 0.05 1.45 5.51 -17.40 -0.10 1.35 16 17 N -0.85 -23.97 13.94 55.53 0.77 -23.19 16 18 Si 0.87 19.86 27.74 -169.99 -4.72 15.14 16 19 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.26 -5.79 6.53 56.52 0.37 -5.43 16 22 C 0.50 7.63 7.66 -10.86 -0.08 7.55 16 23 O -0.50 -10.27 17.59 5.56 0.10 -10.18 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.64 7.82 -51.93 -0.41 0.23 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.41 6.39 7.88 -40.82 -0.32 6.07 16 34 H 0.38 9.50 5.22 -40.82 -0.21 9.29 16 35 H 0.28 7.25 8.30 -40.82 -0.34 6.91 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -35.77 307.74 -4.72 -40.49 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.26 Total: 11.74 kcal Atomic # 6 Polarization: 22.67 SS G_CDS: -0.58 Total: 22.08 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.07 Total: -56.02 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: 0.27 Total: -38.07 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.72 Total: 15.14 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.77 -4.72 -40.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709068552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.017 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds