Wall clock time and date at job start Mon Mar 30 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47225 * 2 1 4 4 C 1.46771 * 124.34563 * 89.99900 * 3 2 1 5 5 C 1.54472 * 105.47009 * 162.98695 * 4 3 2 6 6 C 1.54624 * 101.76850 * 25.41409 * 5 4 3 7 7 H 1.09001 * 110.48767 * 94.01512 * 6 5 4 8 8 N 1.46500 * 110.49069 * 216.52272 * 6 5 4 9 9 C 1.34773 * 120.00431 * 205.00250 * 8 6 5 10 10 O 1.21443 * 119.99988 * 359.97438 * 9 8 6 11 11 C 1.48832 * 120.00135 * 180.02562 * 9 8 6 12 12 O 1.21503 * 119.99913 * 359.97438 * 11 9 8 13 13 N 1.34777 * 119.99765 * 179.97438 * 11 9 8 14 14 C 1.36126 * 119.99762 * 179.71995 * 13 11 9 15 15 H 1.08002 * 119.99676 * 0.28533 * 14 13 11 16 16 C 1.39582 * 119.99936 * 180.27850 * 14 13 11 17 17 N 1.31014 * 120.00124 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46812 * 90.00436 * 18 16 14 20 20 H 1.48502 * 109.47120 * 209.99641 * 18 16 14 21 21 H 1.48494 * 109.47357 * 330.00360 * 18 16 14 22 22 C 1.34413 * 124.35243 * 270.00335 * 3 2 1 23 23 O 1.21280 * 124.94206 * 0.44076 * 22 3 2 24 24 H 1.08996 * 109.47077 * 299.99996 * 1 2 3 25 25 H 1.09007 * 109.46923 * 60.00145 * 1 2 3 26 26 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47170 * 240.00437 * 2 1 3 28 28 H 1.08999 * 109.47235 * 120.00441 * 2 1 3 29 29 H 1.08999 * 110.24411 * 43.98369 * 4 3 2 30 30 H 1.09005 * 110.24497 * 281.98395 * 4 3 2 31 31 H 1.09002 * 110.97370 * 267.29504 * 5 4 3 32 32 H 1.09002 * 111.00298 * 143.55060 * 5 4 3 33 33 H 0.97000 * 119.99456 * 24.99812 * 8 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 13 11 9 35 35 H 0.96999 * 120.00271 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 1.2118 5 6 3.1744 3.3440 0.7488 6 6 2.7695 3.4754 -0.7377 7 1 1.9761 4.2139 -0.8531 8 7 3.9296 3.8391 -1.5550 9 6 3.7538 4.4821 -2.7263 10 8 2.6337 4.7595 -3.1046 11 6 4.9324 4.8511 -3.5569 12 8 6.0531 4.5731 -3.1787 13 7 4.7566 5.4936 -4.7285 14 6 5.8349 5.8362 -5.4854 15 1 6.8310 5.5890 -5.1493 16 6 5.6531 6.5068 -6.6960 17 7 6.6908 6.8360 -7.4248 18 14 3.9301 6.9347 -7.2771 19 1 3.5533 8.2759 -6.7630 20 1 3.8971 6.9466 -8.7617 21 1 2.9704 5.9221 -6.7686 22 6 2.2711 2.0963 -1.1097 23 8 2.1209 1.6946 -2.2441 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.8323 1.5530 1.9384 30 1 1.3637 2.5307 1.6430 31 1 4.2331 3.1033 0.8449 32 1 2.9312 4.2518 1.3011 33 1 4.8243 3.6172 -1.2530 34 1 3.8619 5.7159 -5.0303 35 1 6.5645 7.3017 -8.2663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709068552.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:42 Heat of formation + Delta-G solvation = -124.563602 kcal Electronic energy + Delta-G solvation = -20533.499923 eV Core-core repulsion = 17144.709844 eV Total energy + Delta-G solvation = -3388.790079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.01219 -40.98558 -39.18424 -37.63471 -36.67570 -35.92443 -34.04764 -33.53529 -30.18477 -28.66994 -27.60827 -24.93310 -24.19281 -22.72673 -21.47262 -20.96544 -20.44929 -18.91799 -18.13119 -17.73394 -17.41887 -17.06847 -16.61283 -16.50363 -15.55551 -15.30541 -15.18692 -14.81953 -14.72915 -14.48914 -14.43650 -14.41875 -13.92960 -13.27142 -13.11080 -12.96518 -12.80256 -12.59072 -12.55272 -12.18100 -12.02267 -11.92697 -11.73802 -11.58067 -10.50244 -10.41159 -10.12516 -9.76372 -8.65360 -6.19017 0.45348 1.19903 1.27501 1.31546 1.37359 1.75697 2.02503 2.08033 2.26563 2.98441 3.03942 3.31642 3.44428 3.75399 3.91931 4.01205 4.11041 4.24845 4.47484 4.48965 4.70442 4.82386 4.92330 4.96617 5.01518 5.19128 5.23475 5.26152 5.60124 5.70359 5.97754 6.02809 6.31654 6.54340 6.84569 7.07183 7.10631 7.57504 8.49061 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.004255 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.000574 B = 6578.512302 C = 6943.533893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.613 5.613 4 C 0.103 3.897 5 C -0.123 4.123 6 C 0.105 3.895 7 H 0.122 0.878 8 N -0.678 5.678 9 C 0.526 3.474 10 O -0.554 6.554 11 C 0.407 3.593 12 O -0.601 6.601 13 N -0.531 5.531 14 C -0.340 4.340 15 H 0.081 0.919 16 C 0.014 3.986 17 N -0.889 5.889 18 Si 0.946 3.054 19 H -0.247 1.247 20 H -0.255 1.255 21 H -0.255 1.255 22 C 0.488 3.512 23 O -0.573 6.573 24 H 0.076 0.924 25 H 0.026 0.974 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.421 0.579 34 H 0.392 0.608 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 -9.161 21.730 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.348 5.348 4 C -0.018 4.018 5 C -0.161 4.161 6 C -0.003 4.003 7 H 0.140 0.860 8 N -0.332 5.332 9 C 0.308 3.692 10 O -0.432 6.432 11 C 0.192 3.808 12 O -0.488 6.488 13 N -0.169 5.169 14 C -0.469 4.469 15 H 0.099 0.901 16 C -0.192 4.192 17 N -0.526 5.526 18 Si 0.765 3.235 19 H -0.170 1.170 20 H -0.178 1.178 21 H -0.180 1.180 22 C 0.274 3.726 23 O -0.452 6.452 24 H 0.094 0.906 25 H 0.045 0.955 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.260 0.740 34 H 0.228 0.772 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.126 -9.349 20.953 26.433 hybrid contribution -0.224 0.162 -1.078 1.113 sum -13.350 -9.187 19.875 25.645 Atomic orbital electron populations 1.22118 0.95132 1.03259 1.01698 1.21558 0.94938 0.80263 1.03814 1.48477 1.64697 1.14231 1.07351 1.22468 1.01009 0.92078 0.86277 1.23070 1.02452 1.01492 0.89117 1.21978 0.90442 0.94240 0.93642 0.86023 1.45338 1.10888 1.57255 1.19739 1.19978 0.88450 0.78193 0.82533 1.90678 1.25853 1.55274 1.71421 1.19525 0.89341 0.87275 0.84700 1.90588 1.25663 1.59766 1.72809 1.41713 1.09222 1.48191 1.17755 1.19203 0.88187 1.36979 1.02533 0.90146 1.26043 1.03115 0.95072 0.94939 1.69535 1.32628 1.36578 1.13845 0.85627 0.77418 0.80559 0.79859 1.17041 1.17841 1.17991 1.21742 0.77200 0.88951 0.84746 1.90719 1.54576 1.76061 1.23801 0.90551 0.95510 0.89735 0.92687 0.86279 0.86446 0.88152 0.87793 0.84914 0.74008 0.77207 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.24 71.98 0.74 -1.55 16 2 C 0.12 1.76 6.65 86.38 0.57 2.33 16 3 N -0.61 -11.24 2.93 -817.99 -2.40 -13.64 16 4 C 0.10 0.81 7.35 86.83 0.64 1.45 16 5 C -0.12 -1.32 6.87 31.65 0.22 -1.10 16 6 C 0.11 2.60 3.28 44.98 0.15 2.75 16 7 H 0.12 3.14 7.55 -2.39 -0.02 3.12 16 8 N -0.68 -22.27 5.12 -444.49 -2.28 -24.55 16 9 C 0.53 22.89 7.87 87.08 0.69 23.57 16 10 O -0.55 -25.82 16.12 -3.54 -0.06 -25.88 16 11 C 0.41 20.95 7.82 87.08 0.68 21.63 16 12 O -0.60 -33.39 16.03 -3.73 -0.06 -33.45 16 13 N -0.53 -28.50 5.06 -308.87 -1.56 -30.06 16 14 C -0.34 -20.27 10.16 84.35 0.86 -19.41 16 15 H 0.08 5.44 7.37 -2.91 -0.02 5.42 16 16 C 0.01 0.76 5.51 85.14 0.47 1.23 16 17 N -0.89 -51.42 13.94 21.76 0.30 -51.12 16 18 Si 0.95 40.93 27.74 68.60 1.90 42.83 16 19 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 20 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.26 -10.86 6.53 99.48 0.65 -10.21 16 22 C 0.49 14.49 7.66 87.90 0.67 15.16 16 23 O -0.57 -24.18 17.59 -3.03 -0.05 -24.24 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 1.15 7.93 -2.39 -0.02 1.13 16 28 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.12 0.24 8.14 -2.39 -0.02 0.23 16 30 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.10 0.96 7.82 -2.39 -0.02 0.94 16 32 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.42 12.59 7.88 -92.71 -0.73 11.86 16 34 H 0.39 19.55 5.22 -92.71 -0.48 19.06 16 35 H 0.29 15.17 8.30 -92.71 -0.77 14.40 16 Total: -1.00 -84.33 307.74 1.35 -82.98 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.13 Total: 31.06 kcal Atomic # 6 Polarization: 40.38 SS G_CDS: 5.68 Total: 46.06 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -5.93 Total: -119.37 kcal Atomic # 8 Polarization: -83.39 SS G_CDS: -0.17 Total: -83.56 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.90 Total: 42.83 kcal Total: -84.33 1.35 -82.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709068552.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.581 kcal (2) G-P(sol) polarization free energy of solvation -84.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds