Wall clock time and date at job start Mon Mar 30 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46759 * 124.34915 * 269.72997 * 3 2 1 5 5 C 1.54663 * 105.38247 * 162.85207 * 4 3 2 6 6 C 1.54629 * 101.68193 * 25.76408 * 5 4 3 7 7 H 1.09005 * 110.48385 * 216.31096 * 6 5 4 8 8 N 1.46501 * 110.59960 * 93.72409 * 6 5 4 9 9 C 1.34780 * 119.99974 * 158.70038 * 8 6 5 10 10 O 1.21437 * 119.99969 * 0.02562 * 9 8 6 11 11 C 1.48833 * 119.99815 * 179.97438 * 9 8 6 12 12 O 1.21502 * 120.00115 * 0.02562 * 11 9 8 13 13 N 1.34776 * 119.99507 * 180.02562 * 11 9 8 14 14 C 1.36125 * 119.99361 * 180.02562 * 13 11 9 15 15 H 1.08000 * 120.00340 * 0.02562 * 14 13 11 16 16 C 1.39587 * 119.99655 * 179.97438 * 14 13 11 17 17 N 1.31012 * 120.00185 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47216 * 60.00754 * 18 16 14 20 20 H 1.48499 * 109.46724 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47189 * 300.00285 * 18 16 14 22 22 C 1.34423 * 124.34493 * 90.02277 * 3 2 1 23 23 O 1.21274 * 124.94486 * 0.43066 * 22 3 2 24 24 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 29 29 H 1.09005 * 110.24338 * 281.97777 * 4 3 2 30 30 H 1.08993 * 110.24659 * 43.98042 * 4 3 2 31 31 H 1.09002 * 111.19115 * 267.59212 * 5 4 3 32 32 H 1.09001 * 110.85327 * 143.78789 * 5 4 3 33 33 H 0.97003 * 120.00184 * 338.70344 * 8 6 5 34 34 H 0.96990 * 120.00555 * 0.02562 * 13 11 9 35 35 H 0.96998 * 120.00136 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3527 3.6347 -0.7485 6 6 2.7508 3.4819 0.7379 7 1 2.2497 4.2349 1.3463 8 7 4.2039 3.5814 0.8951 9 6 4.7317 3.9040 2.0926 10 8 4.0027 4.1117 3.0413 11 6 6.2080 4.0045 2.2524 12 8 6.9374 3.7963 1.3033 13 7 6.7357 4.3266 3.4500 14 6 8.0859 4.4191 3.5960 15 1 8.7342 4.2348 2.7522 16 6 8.6325 4.7532 4.8363 17 7 7.8460 4.9773 5.8598 18 14 10.4853 4.8807 5.0365 19 1 11.0116 5.9239 4.1199 20 1 10.8075 5.2457 6.4394 21 1 11.1097 3.5736 4.7096 22 6 2.2716 2.0960 1.1099 23 8 2.1361 1.6891 2.2442 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.2575 1.8612 -1.6381 30 1 1.5020 2.0235 -1.9416 31 1 1.3778 4.1128 -0.8440 32 1 3.1122 4.1879 -1.3009 33 1 4.7863 3.4152 0.1374 34 1 6.1534 4.4925 4.2078 35 1 8.2258 5.2091 6.7217 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709068554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:46 Heat of formation + Delta-G solvation = -100.787607 kcal Electronic energy + Delta-G solvation = -20541.807268 eV Core-core repulsion = 17154.048193 eV Total energy + Delta-G solvation = -3387.759075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77651 -39.13536 -37.14368 -36.46523 -34.99054 -34.16934 -32.39386 -31.36774 -29.33432 -27.39425 -25.72875 -23.77240 -23.06365 -21.61333 -19.66858 -19.41282 -18.34426 -17.27154 -16.87546 -16.40329 -15.68428 -15.42570 -14.90326 -14.68147 -14.27501 -14.03306 -13.95236 -13.80496 -13.58188 -12.96788 -12.79132 -12.54560 -12.46443 -12.15297 -11.79025 -11.70491 -11.51366 -11.26595 -11.16968 -10.57443 -10.43517 -10.34284 -10.16001 -9.70214 -8.83703 -8.71513 -8.27788 -8.22148 -6.66206 -3.98696 2.35586 2.51648 2.86775 3.16632 3.18390 3.20215 3.51743 4.06810 4.16501 4.21010 4.39362 4.62491 4.77116 4.87702 4.99731 5.04427 5.15808 5.20100 5.21952 5.48017 5.50569 5.56717 5.65541 5.72728 5.93853 6.05898 6.45348 6.63213 7.02135 7.31327 7.63264 7.82920 8.20929 8.31944 8.60503 8.95878 9.31859 9.85061 10.48438 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038221 B = 0.003958 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.414720 B = 7072.837227 C = 7256.978181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.623 5.623 4 C 0.102 3.898 5 C -0.140 4.140 6 C 0.117 3.883 7 H 0.120 0.880 8 N -0.701 5.701 9 C 0.513 3.487 10 O -0.527 6.527 11 C 0.395 3.605 12 O -0.599 6.599 13 N -0.496 5.496 14 C -0.307 4.307 15 H 0.113 0.887 16 C 0.031 3.969 17 N -0.867 5.867 18 Si 0.941 3.059 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.269 1.269 22 C 0.505 3.495 23 O -0.505 6.505 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.413 0.587 34 H 0.405 0.595 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.085 -4.877 -14.337 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.000 4.000 3 N -0.360 5.360 4 C -0.021 4.021 5 C -0.178 4.178 6 C 0.007 3.993 7 H 0.137 0.863 8 N -0.358 5.358 9 C 0.298 3.702 10 O -0.401 6.401 11 C 0.179 3.821 12 O -0.488 6.488 13 N -0.130 5.130 14 C -0.437 4.437 15 H 0.130 0.870 16 C -0.176 4.176 17 N -0.504 5.504 18 Si 0.766 3.234 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.194 1.194 22 C 0.290 3.710 23 O -0.377 6.377 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.250 0.750 34 H 0.241 0.759 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.220 -5.100 -13.381 18.825 hybrid contribution 0.666 -0.008 0.159 0.685 sum -11.554 -5.108 -13.221 18.287 Atomic orbital electron populations 1.22155 0.95856 1.02224 1.02415 1.21317 0.94225 0.81311 1.03176 1.48352 1.66514 1.13852 1.07255 1.22137 1.01798 0.90611 0.87595 1.22957 1.04209 0.96353 0.94307 1.21524 0.83828 0.96043 0.97855 0.86253 1.45436 1.04781 1.72147 1.13464 1.20815 0.90703 0.76371 0.82322 1.90737 1.62503 1.48157 1.38693 1.18828 0.86685 0.91048 0.85528 1.90570 1.60623 1.58348 1.39288 1.41554 1.08306 1.53562 1.09543 1.19846 0.81881 1.44673 0.97342 0.86961 1.25607 1.01506 0.95797 0.94666 1.69480 1.36887 1.42285 1.01776 0.85765 0.80730 0.79378 0.77525 1.19345 1.20572 1.19363 1.21388 0.76799 0.88270 0.84569 1.90754 1.51072 1.74819 1.21034 0.92514 0.92171 0.91516 0.90052 0.90408 0.90749 0.90157 0.88457 0.87992 0.75047 0.75919 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.12 1.19 6.65 -4.04 -0.03 1.16 16 3 N -0.62 -7.21 2.93 -172.30 -0.51 -7.71 16 4 C 0.10 0.79 7.36 -3.03 -0.02 0.77 16 5 C -0.14 -1.14 6.79 -25.00 -0.17 -1.31 16 6 C 0.12 1.65 3.22 -67.94 -0.22 1.43 16 7 H 0.12 1.81 7.67 -51.93 -0.40 1.42 16 8 N -0.70 -12.03 5.12 -54.44 -0.28 -12.31 16 9 C 0.51 11.55 7.86 -11.87 -0.09 11.45 16 10 O -0.53 -13.07 16.18 5.42 0.09 -12.98 16 11 C 0.39 10.13 7.82 -11.87 -0.09 10.04 16 12 O -0.60 -16.05 16.03 5.36 0.09 -15.96 16 13 N -0.50 -13.55 5.25 -11.59 -0.06 -13.61 16 14 C -0.31 -8.55 9.67 -15.14 -0.15 -8.70 16 15 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 16 C 0.03 0.83 5.51 -17.40 -0.10 0.73 16 17 N -0.87 -23.57 13.03 55.53 0.72 -22.85 16 18 Si 0.94 20.23 29.56 -169.99 -5.02 15.20 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 C 0.51 8.15 7.65 -10.86 -0.08 8.07 16 23 O -0.50 -10.68 17.59 5.56 0.10 -10.58 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.70 8.04 -51.93 -0.42 0.28 16 33 H 0.41 6.37 8.04 -40.82 -0.33 6.05 16 34 H 0.41 11.24 7.35 -40.82 -0.30 10.94 16 35 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -35.05 311.21 -5.08 -40.13 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -4.32 Total: 13.36 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: -0.57 Total: 22.62 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.12 Total: -56.48 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: 0.27 Total: -39.52 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.05 -5.08 -40.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709068554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.657 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds