Wall clock time and date at job start Mon Mar 30 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46759 * 124.34915 * 269.72997 * 3 2 1 5 5 C 1.54663 * 105.38247 * 162.85207 * 4 3 2 6 6 C 1.54629 * 101.68193 * 25.76408 * 5 4 3 7 7 H 1.09005 * 110.48385 * 216.31096 * 6 5 4 8 8 N 1.46501 * 110.59960 * 93.72409 * 6 5 4 9 9 C 1.34780 * 119.99974 * 158.70038 * 8 6 5 10 10 O 1.21437 * 119.99969 * 0.02562 * 9 8 6 11 11 C 1.48833 * 119.99815 * 179.97438 * 9 8 6 12 12 O 1.21502 * 120.00115 * 0.02562 * 11 9 8 13 13 N 1.34776 * 119.99507 * 180.02562 * 11 9 8 14 14 C 1.36125 * 119.99361 * 180.02562 * 13 11 9 15 15 H 1.08000 * 120.00340 * 0.02562 * 14 13 11 16 16 C 1.39587 * 119.99655 * 179.97438 * 14 13 11 17 17 N 1.31012 * 120.00185 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47216 * 60.00754 * 18 16 14 20 20 H 1.48499 * 109.46724 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47189 * 300.00285 * 18 16 14 22 22 C 1.34423 * 124.34493 * 90.02277 * 3 2 1 23 23 O 1.21274 * 124.94486 * 0.43066 * 22 3 2 24 24 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 29 29 H 1.09005 * 110.24338 * 281.97777 * 4 3 2 30 30 H 1.08993 * 110.24659 * 43.98042 * 4 3 2 31 31 H 1.09002 * 111.19115 * 267.59212 * 5 4 3 32 32 H 1.09001 * 110.85327 * 143.78789 * 5 4 3 33 33 H 0.97003 * 120.00184 * 338.70344 * 8 6 5 34 34 H 0.96990 * 120.00555 * 0.02562 * 13 11 9 35 35 H 0.96998 * 120.00136 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2998 2.1600 -1.2117 5 6 2.3527 3.6347 -0.7485 6 6 2.7508 3.4819 0.7379 7 1 2.2497 4.2349 1.3463 8 7 4.2039 3.5814 0.8951 9 6 4.7317 3.9040 2.0926 10 8 4.0027 4.1117 3.0413 11 6 6.2080 4.0045 2.2524 12 8 6.9374 3.7963 1.3033 13 7 6.7357 4.3266 3.4500 14 6 8.0859 4.4191 3.5960 15 1 8.7342 4.2348 2.7522 16 6 8.6325 4.7532 4.8363 17 7 7.8460 4.9773 5.8598 18 14 10.4853 4.8807 5.0365 19 1 11.0116 5.9239 4.1199 20 1 10.8075 5.2457 6.4394 21 1 11.1097 3.5736 4.7096 22 6 2.2716 2.0960 1.1099 23 8 2.1361 1.6891 2.2442 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.2575 1.8612 -1.6381 30 1 1.5020 2.0235 -1.9416 31 1 1.3778 4.1128 -0.8440 32 1 3.1122 4.1879 -1.3009 33 1 4.7863 3.4152 0.1374 34 1 6.1534 4.4925 4.2078 35 1 8.2258 5.2091 6.7217 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709068554.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:46 Heat of formation + Delta-G solvation = -129.742124 kcal Electronic energy + Delta-G solvation = -20543.062830 eV Core-core repulsion = 17154.048193 eV Total energy + Delta-G solvation = -3389.014637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.01723 -40.87245 -39.06769 -37.69194 -36.56696 -35.88934 -33.67374 -33.29505 -30.24212 -28.60329 -27.59662 -25.00675 -24.32408 -22.67531 -21.42990 -20.50178 -20.40880 -18.94951 -18.17273 -17.67412 -17.31407 -16.84653 -16.49730 -16.27579 -15.74629 -15.57094 -15.26474 -14.82380 -14.67377 -14.48290 -14.37496 -13.92417 -13.67626 -13.37632 -12.96570 -12.87598 -12.61549 -12.47286 -12.42477 -12.22576 -12.12218 -12.02921 -11.66550 -11.53192 -10.30433 -10.29678 -10.14493 -9.76310 -8.67421 -6.13072 0.53481 1.12988 1.41439 1.48990 1.55128 1.89021 2.03277 2.30454 2.34818 3.12420 3.23641 3.32428 3.38076 3.84576 3.97779 4.09867 4.12390 4.26115 4.47355 4.53041 4.68622 4.83798 4.91201 4.94848 5.01237 5.22499 5.23298 5.26268 5.59132 5.64547 5.99841 6.09107 6.33488 6.77265 6.96707 7.06120 7.23870 7.75650 8.48273 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038221 B = 0.003958 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.414720 B = 7072.837227 C = 7256.978181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.113 3.887 3 N -0.611 5.611 4 C 0.095 3.905 5 C -0.122 4.122 6 C 0.106 3.894 7 H 0.105 0.895 8 N -0.677 5.677 9 C 0.516 3.484 10 O -0.556 6.556 11 C 0.391 3.609 12 O -0.613 6.613 13 N -0.510 5.510 14 C -0.347 4.347 15 H 0.103 0.897 16 C -0.006 4.006 17 N -0.896 5.896 18 Si 1.014 2.986 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.264 1.264 22 C 0.489 3.511 23 O -0.573 6.573 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.423 0.577 34 H 0.399 0.601 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -5.048 -17.207 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.008 4.008 3 N -0.345 5.345 4 C -0.026 4.026 5 C -0.160 4.160 6 C -0.002 4.002 7 H 0.123 0.877 8 N -0.333 5.333 9 C 0.300 3.700 10 O -0.433 6.433 11 C 0.175 3.825 12 O -0.502 6.502 13 N -0.143 5.143 14 C -0.476 4.476 15 H 0.121 0.879 16 C -0.210 4.210 17 N -0.534 5.534 18 Si 0.834 3.166 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.188 1.188 22 C 0.275 3.725 23 O -0.450 6.450 24 H 0.097 0.903 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.262 0.738 34 H 0.234 0.766 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.393 -5.288 -16.364 21.197 hybrid contribution 0.595 -0.020 0.927 1.102 sum -11.798 -5.307 -15.437 20.141 Atomic orbital electron populations 1.22088 0.94439 1.03318 1.01971 1.21553 0.95401 0.80350 1.03517 1.48531 1.64258 1.14397 1.07334 1.22553 1.04245 0.89345 0.86449 1.23079 1.06238 0.97481 0.89164 1.21861 0.81120 0.94936 1.02291 0.87741 1.45297 1.06712 1.69638 1.11686 1.20293 0.89108 0.76916 0.83724 1.90727 1.62566 1.49969 1.40060 1.19438 0.88304 0.89819 0.84897 1.90531 1.61620 1.58606 1.39489 1.41674 1.08359 1.54359 1.09897 1.20010 0.82191 1.47342 0.98099 0.87937 1.26628 1.06584 0.94242 0.93594 1.69560 1.39135 1.42292 1.02404 0.84707 0.74192 0.79604 0.78125 1.18458 1.19181 1.18836 1.21750 0.76774 0.89319 0.84673 1.90711 1.54313 1.76198 1.23825 0.90274 0.95127 0.89766 0.93032 0.86718 0.89266 0.85992 0.85555 0.85758 0.73799 0.76644 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.24 71.98 0.74 -1.59 16 2 C 0.11 2.00 6.65 86.38 0.57 2.57 16 3 N -0.61 -12.87 2.93 -817.64 -2.40 -15.27 16 4 C 0.10 1.03 7.36 86.90 0.64 1.67 16 5 C -0.12 -1.51 6.79 31.72 0.22 -1.29 16 6 C 0.11 2.91 3.22 44.98 0.14 3.06 16 7 H 0.10 3.21 7.67 -2.38 -0.02 3.19 16 8 N -0.68 -22.97 5.12 -444.47 -2.28 -25.25 16 9 C 0.52 23.86 7.86 87.08 0.68 24.55 16 10 O -0.56 -28.81 16.18 -3.52 -0.06 -28.87 16 11 C 0.39 20.62 7.82 87.08 0.68 21.31 16 12 O -0.61 -33.27 16.03 -3.72 -0.06 -33.33 16 13 N -0.51 -28.96 5.25 -308.87 -1.62 -30.58 16 14 C -0.35 -19.88 9.67 84.35 0.82 -19.06 16 15 H 0.10 5.94 7.15 -2.91 -0.02 5.92 16 16 C -0.01 -0.33 5.51 85.14 0.47 0.14 16 17 N -0.90 -49.56 13.03 21.77 0.28 -49.27 16 18 Si 1.01 41.24 29.56 68.60 2.03 43.27 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 C 0.49 15.86 7.65 87.90 0.67 16.53 16 23 O -0.57 -25.59 17.59 -3.01 -0.05 -25.64 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.05 1.23 7.92 -2.39 -0.02 1.21 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.12 1.09 8.04 -2.39 -0.02 1.07 16 33 H 0.42 12.45 8.04 -92.71 -0.75 11.71 16 34 H 0.40 23.27 7.35 -92.72 -0.68 22.59 16 35 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 Total: -1.00 -81.80 311.21 1.19 -80.60 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.29 Total: 36.46 kcal Atomic # 6 Polarization: 42.25 SS G_CDS: 5.63 Total: 47.88 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -6.01 Total: -120.38 kcal Atomic # 8 Polarization: -87.67 SS G_CDS: -0.17 Total: -87.84 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -81.80 1.19 -80.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709068554.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.139 kcal (2) G-P(sol) polarization free energy of solvation -81.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds