Wall clock time and date at job start Mon Mar 30 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.34554 * 125.97667 * 109.09641 * 3 2 1 5 5 N 1.28655 * 109.77562 * 179.97438 * 4 3 2 6 6 N 1.40142 * 108.89970 * 359.74086 * 5 4 3 7 7 C 1.46503 * 126.56058 * 180.29546 * 6 5 4 8 8 H 1.09000 * 109.47397 * 180.15129 * 7 6 5 9 9 C 1.50699 * 109.47321 * 60.14572 * 7 6 5 10 10 H 1.08003 * 120.00095 * 324.85813 * 9 7 6 11 11 C 1.37872 * 120.00221 * 144.85242 * 9 7 6 12 12 N 1.31510 * 120.00019 * 5.33007 * 11 9 7 13 13 Si 1.86801 * 120.00391 * 185.33033 * 11 9 7 14 14 H 1.48504 * 109.46854 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47479 * 119.99914 * 13 11 9 16 16 H 1.48493 * 109.47159 * 240.00306 * 13 11 9 17 17 C 1.50705 * 109.47179 * 300.14907 * 7 6 5 18 18 C 1.38233 * 119.99849 * 64.92991 * 17 7 6 19 19 C 1.38239 * 119.99550 * 179.79177 * 18 17 7 20 20 C 1.38233 * 120.00370 * 0.43657 * 19 18 17 21 21 C 1.38232 * 119.99681 * 359.81890 * 20 19 18 22 22 C 1.38232 * 119.99709 * 245.20482 * 17 7 6 23 23 C 1.35454 * 106.87759 * 0.42233 * 6 5 4 24 24 N 1.38162 * 126.80200 * 179.85844 * 23 6 5 25 25 H 0.96999 * 120.00441 * 180.02562 * 12 11 9 26 26 H 1.08004 * 120.00420 * 359.97438 * 18 17 7 27 27 H 1.08003 * 119.99652 * 180.27898 * 19 18 17 28 28 H 1.07991 * 120.00159 * 179.83583 * 20 19 18 29 29 H 1.07999 * 119.99957 * 179.97438 * 21 20 19 30 30 H 1.07996 * 120.00226 * 359.97438 * 22 17 7 31 31 H 0.97001 * 120.00291 * 179.70528 * 24 23 6 32 32 H 0.97005 * 120.00338 * 359.43289 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3583 0.3572 -1.0290 5 7 4.5938 0.2409 -0.6896 6 7 4.6600 -0.2110 0.6353 7 6 5.8766 -0.4693 1.4095 8 1 5.6060 -0.8141 2.4075 9 6 6.6821 0.7998 1.5178 10 1 6.7029 1.4981 0.6941 11 6 7.3923 1.0695 2.6683 12 7 7.4526 0.1736 3.6291 13 14 8.2690 2.7076 2.8625 14 1 8.0473 3.5345 1.6491 15 1 7.7319 3.4188 4.0504 16 1 9.7240 2.4720 3.0425 17 6 6.6971 -1.5274 0.7179 18 6 7.2440 -1.2745 -0.5262 19 6 8.0002 -2.2435 -1.1587 20 6 8.2019 -3.4687 -0.5512 21 6 7.6506 -3.7235 0.6905 22 6 6.8980 -2.7529 1.3250 23 6 3.3838 -0.3661 1.0622 24 7 2.9749 -0.7978 2.3093 25 1 7.9519 0.3634 4.4387 26 1 7.0830 -0.3187 -1.0028 27 1 8.4312 -2.0443 -2.1288 28 1 8.7905 -4.2267 -1.0465 29 1 7.8078 -4.6808 1.1650 30 1 6.4673 -2.9519 2.2952 31 1 2.0290 -0.8689 2.5118 32 1 3.6338 -1.0335 2.9811 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713488386.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:54 Heat of formation + Delta-G solvation = 144.062879 kcal Electronic energy + Delta-G solvation = -19620.372046 eV Core-core repulsion = 16582.832156 eV Total energy + Delta-G solvation = -3037.539890 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36590 -38.54449 -36.15923 -35.33884 -34.32346 -32.35648 -30.43059 -30.19886 -28.94805 -27.18749 -24.15662 -22.87783 -21.90207 -21.59269 -20.23838 -18.54663 -16.96069 -16.94074 -16.39251 -15.86973 -15.25933 -14.97491 -14.55295 -14.30714 -13.72524 -13.09899 -13.00072 -12.76859 -12.62618 -12.48656 -12.20215 -11.99490 -11.39773 -11.39004 -11.26669 -11.20994 -10.75793 -10.59256 -10.43724 -10.37463 -9.85212 -9.07233 -8.84991 -8.24626 -8.06682 -7.66560 -6.60732 -4.66885 1.93095 2.05879 2.08925 2.35246 2.76738 2.91290 3.06411 3.15084 3.21502 3.90324 3.92997 4.05941 4.27363 4.57202 4.80259 5.19261 5.43130 5.48408 5.59157 5.68836 5.88476 6.07276 6.20102 6.26885 6.51143 6.65170 6.78341 6.82861 7.08713 7.16423 7.32790 7.40144 7.50626 7.55130 7.67199 7.72268 7.86707 8.45319 8.80443 9.00472 10.45669 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.008238 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.321236 B = 3398.180055 C = 4610.889705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.321 3.679 3 C -0.096 4.096 4 N -0.195 5.195 5 N -0.058 5.058 6 N -0.348 5.348 7 C 0.298 3.702 8 H 0.093 0.907 9 C -0.519 4.519 10 H 0.080 0.920 11 C 0.075 3.925 12 N -0.874 5.874 13 Si 0.909 3.091 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.278 1.278 17 C -0.058 4.058 18 C -0.081 4.081 19 C -0.133 4.133 20 C -0.136 4.136 21 C -0.132 4.132 22 C -0.109 4.109 23 C 0.388 3.612 24 N -0.831 5.831 25 H 0.273 0.727 26 H 0.128 0.872 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.416 0.584 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -5.216 -0.123 5.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C 0.005 3.995 3 C -0.240 4.240 4 N -0.069 5.069 5 N -0.038 5.038 6 N -0.140 5.140 7 C 0.201 3.799 8 H 0.110 0.890 9 C -0.557 4.557 10 H 0.098 0.902 11 C -0.132 4.132 12 N -0.509 5.509 13 Si 0.735 3.265 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.059 4.059 18 C -0.100 4.100 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.128 4.128 23 C 0.144 3.856 24 N -0.380 5.380 25 H 0.082 0.918 26 H 0.146 0.854 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.247 0.753 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.195 -4.804 -1.195 5.092 hybrid contribution 0.619 0.329 1.673 1.814 sum -0.576 -4.475 0.477 4.537 Atomic orbital electron populations 1.81211 1.11097 1.12433 1.07660 1.23830 0.90314 0.91951 0.93369 1.15952 0.86726 1.27692 0.93602 1.74526 0.97900 1.11483 1.23031 1.81793 1.09960 1.20148 0.91881 1.51638 1.04696 1.46157 1.11484 1.18529 0.78065 0.94654 0.88619 0.88974 1.21181 1.28914 1.03458 1.02114 0.90227 1.25016 0.95709 0.97711 0.94799 1.69866 1.39827 1.33836 1.07368 0.86235 0.79175 0.82358 0.78758 1.18982 1.20453 1.20399 1.20328 0.98397 0.93024 0.94189 1.21107 0.95253 0.98985 0.94624 1.21068 1.00091 0.94129 0.99864 1.20937 1.01298 0.97178 0.96041 1.20935 0.99448 0.98915 0.95751 1.20959 0.99565 0.92819 0.99437 1.18496 0.86443 0.93284 0.87423 1.41351 1.11241 1.74830 1.10610 0.91757 0.85410 0.86956 0.87273 0.87139 0.86787 0.75317 0.75583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.76 18.54 41.84 0.78 -6.99 16 2 C 0.32 5.47 15.62 -22.47 -0.35 5.12 16 3 C -0.10 -1.72 6.96 -84.52 -0.59 -2.31 16 4 N -0.20 -3.89 12.38 32.33 0.40 -3.49 16 5 N -0.06 -1.20 12.44 60.35 0.75 -0.45 16 6 N -0.35 -6.88 3.28 -55.74 -0.18 -7.06 16 7 C 0.30 6.21 2.81 -70.23 -0.20 6.01 16 8 H 0.09 1.93 5.91 -51.93 -0.31 1.62 16 9 C -0.52 -12.17 8.00 -34.44 -0.28 -12.44 16 10 H 0.08 1.96 7.82 -52.48 -0.41 1.55 16 11 C 0.07 1.76 5.45 -17.82 -0.10 1.66 16 12 N -0.87 -20.82 12.84 55.43 0.71 -20.10 16 13 Si 0.91 19.01 29.54 -169.99 -5.02 13.98 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 C -0.06 -1.16 5.00 -104.62 -0.52 -1.69 16 18 C -0.08 -1.59 8.61 -39.58 -0.34 -1.93 16 19 C -0.13 -2.28 10.05 -39.58 -0.40 -2.67 16 20 C -0.14 -2.17 10.05 -39.59 -0.40 -2.56 16 21 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.11 -2.01 9.67 -39.58 -0.38 -2.39 16 23 C 0.39 6.69 8.07 -153.26 -1.24 5.46 16 24 N -0.83 -10.83 9.05 31.45 0.28 -10.54 16 25 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 26 H 0.13 2.59 7.35 -52.48 -0.39 2.20 16 27 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.11 1.97 7.95 -52.49 -0.42 1.55 16 31 H 0.42 4.33 8.67 -40.82 -0.35 3.98 16 32 H 0.41 5.11 7.77 -40.82 -0.32 4.79 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -26.13 297.68 -5.58 -31.70 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.59 Total: 8.78 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -5.19 Total: -10.32 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 2.74 Total: -48.63 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.13 -5.58 -31.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713488386.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.766 kcal (2) G-P(sol) polarization free energy of solvation -26.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds